Lsi10G002210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G002210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome P450, family 89, subfamily A, polypeptide 3
Location	chr10: 3560320 .. 3560688 (-)
RNA-Seq Expression	Lsi10G002210
Synteny	Lsi10G002210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCACAAGACAAACGGCGGCGGCGCCACCTTGGGAGTGCGATGTCAAGCGGGAGACGAGCGCTTGCAGGCTCCACCTACGGGTGTCGGAGTGGAGTCTCAAGCGAGAGGGATGGAGGATTTCGGAGATAAGGTTACGGCGGAGGAGATTCCAATTGGGGCCGTGGAAGGCGGTGAAGATGGTGATGTGGTTGCTGTAGAGGATTTTGGTGGTAGTGGAGGGAGGGGGACGGTCGGCGAAGGCAGCGCCTTTGTGGACGAGAGCTTGGTGGGCGAGGGAATGGCCGGCGATGAAGATGACAGGACGAGAGCCGAAGTGGAGGGTGAAGATGGGGCCGTAGTGAAGATGGAGGGTGTGAAGAAGTGA

mRNA sequence

ATGGTCCACAAGACAAACGGCGGCGGCGCCACCTTGGGAGTGCGATGTCAAGCGGGAGACGAGCGCTTGCAGGCTCCACCTACGGGTGTCGGAGTGGAGTCTCAAGCGAGAGGGATGGAGGATTTCGGAGATAAGGTTACGGCGGAGGAGATTCCAATTGGGGCCGTGGAAGGCGGTGAAGATGGTGATGTGGTTGCTGTAGAGGATTTTGGTGGTAGTGGAGGGAGGGGGACGGTCGGCGAAGGCAGCGCCTTTGTGGACGAGAGCTTGGTGGGCGAGGGAATGGCCGGCGATGAAGATGACAGGACGAGAGCCGAAGTGGAGGGTGAAGATGGGGCCGTAGTGAAGATGGAGGGTGTGAAGAAGTGA

Coding sequence (CDS)

ATGGTCCACAAGACAAACGGCGGCGGCGCCACCTTGGGAGTGCGATGTCAAGCGGGAGACGAGCGCTTGCAGGCTCCACCTACGGGTGTCGGAGTGGAGTCTCAAGCGAGAGGGATGGAGGATTTCGGAGATAAGGTTACGGCGGAGGAGATTCCAATTGGGGCCGTGGAAGGCGGTGAAGATGGTGATGTGGTTGCTGTAGAGGATTTTGGTGGTAGTGGAGGGAGGGGGACGGTCGGCGAAGGCAGCGCCTTTGTGGACGAGAGCTTGGTGGGCGAGGGAATGGCCGGCGATGAAGATGACAGGACGAGAGCCGAAGTGGAGGGTGAAGATGGGGCCGTAGTGAAGATGGAGGGTGTGAAGAAGTGA

Protein sequence

MVHKTNGGGATLGVRCQAGDERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVGEGSAFVDESLVGEGMAGDEDDRTRAEVEGEDGAVVKMEGVKK

Homology

[Close]

BLAST of Lsi10G002210 vs. ExPASy TrEMBL
Match: A0A199VP70 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_11389 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 21  ERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVG 80
           E+++ PP   GV ++ARG+++ G +V AE  P GAV GG D  +VA ED  G+ GRG VG
Sbjct: 368 EQVEGPPARGGVGAEARGVQELGGEVAAEGAPDGAVGGGVDAALVAGEDCAGAEGRGAVG 427

Query: 81  EGSAFVDESLVGEGMAGDEDDRTRA--EVEGEDGAV 115
           E  A  DE  VGE   GDED R     ++EG+D AV
Sbjct: 428 ELRAARDEGAVGEDAVGDEDGRAGGGQQLEGDDRAV 463

[Close]

BLAST of Lsi10G002210 vs. ExPASy TrEMBL
Match: A0A4S8JHU5 (CAP10 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb07t22100 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 12  LGVRCQAGDERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFG 71
           +G+  +  DE  + P     VE  AR MED   +V AEE P GA+ GG D  +   E+  
Sbjct: 4   IGLGSEVLDENTEDPRAAASVELDARVMEDLRGEVAAEEAPDGAIGGGGDVVLAHAEEAD 63

Query: 72  GSGGRGTVGEGSAFVDESLVGEGMAGDEDDRTRAEVEGEDGAVVKME 119
                G+VGEGSA +DESLVG+G   DED    A+V+ +DGAV  +E
Sbjct: 64  CRQRGGSVGEGSAVLDESLVGDGSVRDEDGGAGADVKRDDGAVPSVE 110

[Close]

BLAST of Lsi10G002210 vs. ExPASy TrEMBL
Match: A0A7J0D8J7 (Cytochrome P450, family 89, subfamily A, polypeptide 3 OS=Actinidia rufa OX=165716 GN=Acr_00g0008140 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.7e-08
Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 13  GVRCQAGDERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGG 72
           G+  +A DE  Q P +G  V    RGMED G +VTAE+ P GA+ GG +  +VAV D   
Sbjct: 27  GLDKKAIDEDAQHPASGARVRFDPRGMEDLGGEVTAEDAPHGAICGGINVVLVAVYDLAS 86

Query: 73  SGGRGTVGEGSAFVDESLVGEGMAGDEDDRTRAEVEGEDGAVV 116
                 V E S  +DE LVG  MAG E  RTR   EG+DGAV+
Sbjct: 87  RQVLWAVREYSTVLDEGLVGHLMAGHEYSRTRPYAEGDDGAVL 129

[Close]

BLAST of Lsi10G002210 vs. ExPASy TrEMBL
Match: A0A7J6G5L4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010722 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.9e-06
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 39  MEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVGEGSAFVDESLVGEGMAGD 98
           MED    V AEE P GAV GG D  ++ VED      R  VGEG A VD+SLVGE    D
Sbjct: 1   MEDLRSDVAAEEPPCGAVLGGADVKLIIVEDSTCGESRRAVGEGGAIVDKSLVGEDTVSD 60

Query: 99  EDDRTRAEVEGEDGAVVKME 119
           +D   RA  E ++GAV+ +E
Sbjct: 61  DDGSARAYAERDNGAVLGVE 80

[Close]

BLAST of Lsi10G002210 vs. ExPASy TrEMBL
Match: A0A7J6DXI8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027766 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 37/80 (46.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 39  MEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVGEGSAFVDESLVGEGMAGD 98
           MED    V AEE P GAV GG D  +V VED      R  VGEG   VD+ LVGE    D
Sbjct: 1   MEDLRSDVAAEEPPCGAVLGGADVKLVIVEDSTCGESRRAVGEGGPIVDKGLVGEDTVSD 60

Query: 99  EDDRTRAEVEGEDGAVVKME 119
           +D   R   E ++GAV+ +E
Sbjct: 61  DDGSARPYAERDNGAVLGVE 80

[Close]

BLAST of Lsi10G002210 vs. NCBI nr
Match: OAY78818.1 (hypothetical protein ACMD2_11389 [Ananas comosus])

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-09
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 21  ERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVG 80
           E+++ PP   GV ++ARG+++ G +V AE  P GAV GG D  +VA ED  G+ GRG VG
Sbjct: 368 EQVEGPPARGGVGAEARGVQELGGEVAAEGAPDGAVGGGVDAALVAGEDCAGAEGRGAVG 427

Query: 81  EGSAFVDESLVGEGMAGDEDDRTRA--EVEGEDGAV 115
           E  A  DE  VGE   GDED R     ++EG+D AV
Sbjct: 428 ELRAARDEGAVGEDAVGDEDGRAGGGQQLEGDDRAV 463

[Close]

BLAST of Lsi10G002210 vs. NCBI nr
Match: KAG5559086.1 (hypothetical protein RHGRI_008864 [Rhododendron griersonianum])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 46/93 (49.46%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 29  GVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVGEGSAFVDE 88
           G GV   A G+ED   +V AEE P G+V GG D  +VA  D  G  G G+VGE  A +DE
Sbjct: 3   GRGVGFDAGGVEDLRGQVAAEETPGGSVGGGADTVLVAGGDLAGGEGLGSVGEDDAVLDE 62

Query: 89  SLVGEGMAGDEDDRTRAEVEGEDGAVVKMEGVK 122
            LVG+G   DED R     EGEDGAV   EG +
Sbjct: 63  GLVGQGGGADEDGRAGPNTEGEDGAVFCPEGAE 95

[Close]

BLAST of Lsi10G002210 vs. NCBI nr
Match: THU61325.1 (hypothetical protein C4D60_Mb07t22100 [Musa balbisiana])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 12  LGVRCQAGDERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFG 71
           +G+  +  DE  + P     VE  AR MED   +V AEE P GA+ GG D  +   E+  
Sbjct: 4   IGLGSEVLDENTEDPRAAASVELDARVMEDLRGEVAAEEAPDGAIGGGGDVVLAHAEEAD 63

Query: 72  GSGGRGTVGEGSAFVDESLVGEGMAGDEDDRTRAEVEGEDGAVVKME 119
                G+VGEGSA +DESLVG+G   DED    A+V+ +DGAV  +E
Sbjct: 64  CRQRGGSVGEGSAVLDESLVGDGSVRDEDGGAGADVKRDDGAVPSVE 110

[Close]

BLAST of Lsi10G002210 vs. NCBI nr
Match: KAG5559079.1 (hypothetical protein RHGRI_008857 [Rhododendron griersonianum])

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 44/93 (47.31%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 29  GVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGGSGGRGTVGEGSAFVDE 88
           G GV   A G+ED   +V AEE P G+V GG D  +VA  D  G  G G VG+  A +DE
Sbjct: 3   GRGVGFDAGGVEDLRGQVAAEETPGGSVGGGADTVLVAGGDLAGGEGLGAVGKDGAILDE 62

Query: 89  SLVGEGMAGDEDDRTRAEVEGEDGAVVKMEGVK 122
            LVG+G   DED R   + EGED AV + EG +
Sbjct: 63  GLVGQGGGADEDGRAGPDTEGEDWAVFRPEGTE 95

[Close]

BLAST of Lsi10G002210 vs. NCBI nr
Match: GFS29734.1 (cytochrome P450, family 89, subfamily A, polypeptide 3 [Actinidia rufa])

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-08
Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 13  GVRCQAGDERLQAPPTGVGVESQARGMEDFGDKVTAEEIPIGAVEGGEDGDVVAVEDFGG 72
           G+  +A DE  Q P +G  V    RGMED G +VTAE+ P GA+ GG +  +VAV D   
Sbjct: 27  GLDKKAIDEDAQHPASGARVRFDPRGMEDLGGEVTAEDAPHGAICGGINVVLVAVYDLAS 86

Query: 73  SGGRGTVGEGSAFVDESLVGEGMAGDEDDRTRAEVEGEDGAVV 116
                 V E S  +DE LVG  MAG E  RTR   EG+DGAV+
Sbjct: 87  RQVLWAVREYSTVLDEGLVGHLMAGHEYSRTRPYAEGDDGAVL 129

The following BLAST results are available for this feature:

BLAST of Lsi10G002210 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G002210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A199VP70	1.9e-09	47.92	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_11389 PE=4 SV=1	[more]
A0A4S8JHU5	1.2e-08	42.99	CAP10 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb07t22100 ...	[more]
A0A7J0D8J7	4.7e-08	46.60	Cytochrome P450, family 89, subfamily A, polypeptide 3 OS=Actinidia rufa OX=1657...	[more]
A0A7J6G5L4	9.9e-06	48.75	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010722 PE=4 SV=1	[more]
A0A7J6DXI8	3.2e-04	46.25	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027766 PE=4 SV=1	[more]

BLAST of Lsi10G002210 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY78818.1	4.0e-09	47.92	hypothetical protein ACMD2_11389 [Ananas comosus]	[more]
KAG5559086.1	1.5e-08	49.46	hypothetical protein RHGRI_008864 [Rhododendron griersonianum]	[more]
THU61325.1	2.6e-08	42.99	hypothetical protein C4D60_Mb07t22100 [Musa balbisiana]	[more]
KAG5559079.1	5.7e-08	47.31	hypothetical protein RHGRI_008857 [Rhododendron griersonianum]	[more]
GFS29734.1	9.8e-08	46.60	cytochrome P450, family 89, subfamily A, polypeptide 3 [Actinidia rufa]	[more]

BLAST of Lsi10G002210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G002210.1	Lsi10G002210.1	mRNA