Lsi10G001880 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G001880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
Location	chr10: 3151828 .. 3161115 (+)
RNA-Seq Expression	Lsi10G001880
Synteny	Lsi10G001880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAAAAACCTAATCCATAAACCCCAAAATAGATTTTCTTTTGCTGCGTAAAATCTCAAAGGGAAAATCCTCGACGGAGCCGGCGGCGGCGATGGGCTCCGTAGCCATCGTCATCGTTAGGTTATGAGATCCCCTTCCAATTCTCACCTTCATCTCAAAACTATATTCTCTCTCCGTCAGTCTCTCATGGCTTCCTCTTTCACACAAACCCTTAAACCAGATTTACCTCAAGACCTGGACGACCTTCTCTGCTCCGATTCACAGAAACAGCAACAAGAGGAATGCTTGTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGTTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGACGAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCTATGGTTGATAATTCGGAGCTACCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGGAACATGGAATTTACCACTTGTCAGGTATGTGACAATTTAAAGCCATTCTATTGTGTTGACAACTTGAATTCTCTAAGGTATTGATGTATGTGTCCGGCTGCTATTTATTGATCGAAAGCTGATTCTAGGTTATGATCTTGTCTGTATTATTGTTTAAAGTCTATTCTTCATTATTTTTTAATGTTGGAATGATTTGTAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTACGTCGACCTTAACCTTGGGTAATCTCTATTAGTCTAATTTGTATTCAGTTGGGTAATTGTGACTTCTTATAATTCTCGTCGGTTGATGGAGTAAGGATTTGTTCTCCAAAAGACTTTTTTGTTTGTTAAGATTGTGGATTGTTCCCAAGTACCTTTTTGAATAAGTAACGAAACTACAAAAGAAGGGAGCCCCCAATAGGAGGATTTACAGAAGACTTCTCCAATTAGAGAGGAAGAAAGAAAAGCTATAGTAATGAAAAATAGGGGAGCATTTACACCAAGTCACACAAACTAACTAATAGCCTCGAAAAATCCTTAAAAGATTTTTCTATTACGTTGTTGCCAAATGGTCCAACAAAGAGCTCTTACAAAATGTTCCCACACAAGCTTCTTTTCCTTTTTGAAGGGATGACCGCTCGAAGTATAAGCAAAGAAGATCTTTGGGTCCTCTGGTAGGGCCATATGCCAAAAAATTAAGAATTATATTGGTTATTCTAAAATTTCTTACAAAAACACAAGCAGTGAAGAGATGATTTTGACTTTTGGGATTCCAAGCCATTTTACAAATAATGCACCAGTCGGGAGATAAATTGCAGTGAGAAAGTCTTCTCTGAAGCTTGTCATTTGTGTTGATGGTCTTTTGTGATAGGTCCCAGATGAAGAATTTAATTTTTGATTTTTGATTTTTTTTTTGAGAAATGTTATTTCCAAATAAATCATATAGTTCAGGAAAAGTCTCATTGCTAGCTTGATGGAGATCTTTTAGGAGGGAACTGATTGAAAATACATCTTTTTCTCCATTTTTCAAATACCTCTGTCCGGTCTCGGGGATAAAGTGACATCCTCATGGATTTGCACAATGGAGGGTAACTCGTTAATATCAGGTTCCCTCAGATACCTTCTAAGCTAAAGGGTCTTGAAGCACAAGTGCACGGGTCAAGTTATAATATAGTTTAAATTGTCTGGGACAGAGTATCGTCTTTAGAGAATCAGGTATTTGAATCTCCTAGCTATTAAAATGTTTTCAGTTCTATCTAGAAATTCGACAGTGATGATTTTGAACTTAAACTAAAAACAAGAAAAGAGGTGCAAACAACTATGAAAGAATGCAAGCAAAAAGACATCCTAGGATATTGATTTCGCTAAAGAACGGTTGAATTTCACCTATCAAGTTTTGAATCAATTACTATCAATTATCTAGTTCTCGAAGTCTTTTTGTTGGGCCTTTTTGTGATTATCCGAGCTTTGTCTGGGACTCGTTTTTCCAGATGTTTGGTATGATATATGCTCGTCACAGAGATGTTAAAGACATGATCGAGAAGTTCCTCCTCAATTTGCCGTTCGGGGAGAGAGGCTGTTTTCTTTGGCTTGCTAGTGTTTGTGCTATCGTTCTGGTGTTGTGGGGTGAGAGGAATAGTAGGGTGTTTAGGGGGGTTGAGAGGGAAGCTAGAGATATATGGTCTCTTGTTCATTTTCATGTTTCTCACTTGGCATTGATTTGAAGGTTTTTTGTAATTATTCTATGAACATGATTTTGTATAGCTGGAGTCCCTTCTTGTAGAGGGAGTCTCCCTTTTTTGTGGGCTTGGTTTTTGTATGCATGTGTATTCTTTCATTTTTCTCAAGGAAAGTTGTTCTTGTAAAAAAAAGTTCCCAAAGTCTTTTATCCAAGCTACCCTTTCGAGGTCAACCTTTTCTCTCACCTAACTACTAGCTTCTAAATCTATTGAAACTAGTTAATTAGACAAGACACTAAGATCCTTCATCATTAATCTCTATTGTTTTCCTATTACCCTAGTATATTCAAACGATAGTTTAGCATGCAAGGTCTAATCTAAAATTTTCTCACTAAAGCAAGACAATAAATCATATGCATGCATAAACTTAAAATTTAAACTTTTGTAACTTAAACAAAAGAATCAATCCTTTTTATTTAAAGTTAAGAATAAGACCCTTTTGGGTCAGGGTGGCAGACAGTTCCGACAAGGAGTCGAACCCAGAATACAACTGTGCCTTTGTAGAGATCGGTTTCCCTAGCTGTCCCGACTGAGTATACAGCTACGATAGCGGTGATAGGGGAAACGGTCATGACCGCGGTACTGGGTAAGATGAAGGACATGATGGACGAGTGAATGATCCAGTTCGCCCAATCCACAAATATCGGTCTTGCCAGTTCAAACGCCACAAGGGCAGCCCCAGAACAAGAATATGCAGGACTTGTCCCTTAAAGCTAAACACTTCAGGGATTTCGGAAAATACAACCCTCACACCTTTGACAGGTCACTGAAGGACCCTATGAAGACAAAGCTGTGGTTGTGAGACAATCTTTCATCATATGAAGTGCCCAGATGACCATAAACTCCCGTGCGCAGTTTTTATGTTGACAGATAACTCGGAGATATGGTGGCGTTCAGCGGAAAAAATGATAGATACAAGCGGGGGGCTAGCATCGTGAGACCAGTTTAAAGAGCATTTCTATGAAAAATACTTTTCGGCCGGCACACGATACAGCAAACAGTCAGAACTTTTGAGTTTGAAGCAAGAGGCTATGTCGATGGAGGAGTATAAGCAAGAGTTTGACAAGTTGGCCCATTTTTTCCCGGAGATGGTGGCCAATGATGCGGCAAGGACGAACAAGTTCATTTAGGGCATGAGGAGCGAATTACAAGGCTTAATACACGCTCATGAGCTCAAAACCTGTGCCGCAGTGCTTCGACCAGCCGTAAGGATTGATGCTGATTCTCAAGAGGGGGACGAGAATAGGAGGTTGTTGGGAGTAGGGACTTCTGCGGGATAGAAAAGGAAGACAGAGCAGAAGGCTTTCGAGCCTCAGCAGAAGAGTCAACATTCAAATAGTTCGTTCCAACATTTCAAGCAGCAGGCTACACGCTCATGAGCTCAAAACCTATGTCGCAGTGCTTCGACCAGCCGTAAGGATTGATGCTGATTCTCAGGAGGGGGACGAGAATAGGAGGTTGTTGGGAGTAGGGACCTCTGCGGGACAGAAAAGGAAGACAGAGCAGAAGGCTTCCGAGCCTCAGCAGAAGGGTCAACATTCAGATAGGTCGTTCCAACATTTCAAGCAGCAGGCTACTGAGTCAGGAGGGGCTTGGGAGAGATAAGCCCGTCTGTAAGTCTTGTGGAAAGCGACACTAGGGGTGTTGTTTGGCTCGCACAGGGACATGCTATAGGTCCAAGCAGGAGGGGCATATTGCTGAGTCTTGCCATGGTGTTCAGTCTGCTAGAAGCAGGGGTCAGCCCTTGAGTGCTCATTAGGGGAGTTCGAACCGTCAGCAACAGAAGGTCATGTTTATTCAACCACTCGACAGGAGGCTGAGAAGTCAAGCATTATGGTGACAGGTACGCTCCCAATGTTGGGACATTATGCATTGGTGCTGTTTGATTCTGGCTCATTCCATTTGTTTATATCATCAGTATTTGTGAAGTATGCTATGTTAGAATTAGAACCTTTGCATTATGTCTTATCAATTTCTACTTCGTCTGGAGAAATTATGTTAGCAAACGATAAGATAAAAGCATGTCACAGTAATAGTAAACCATACGCTAGATGTGACTTTGATAGCTGTGGACATGCGTGATTTTGGCGTTATATTAGATATGGATTGGTTGGCTGCTAACTGTCACAATCGTACTTCACCAAACGATTGTGCGGCACTTGTTCTCGCTCAGGAACAAGTCAGCCAATTCGAATTCGGATCGCCTACGGCACACCGGGTGCCTTTCGCAACCTCCATCCCCGTTTCTAGAGAAAACGGTTTTAGAAAACAGGTTTAGAGAAAAAGGTTTTCGCAAACAATTTAGAAGAATGTTTGAGAAAAAGATTTGTCGTAAGACTAGAAAGCAAACAAGGGACAACAACGGCTTAATAGCTTACAACTCTCGGGTATGCAAGTATGATGATTAGTCTCACTCGCATATAGTACATTCTAAGTTTTTACAAGATTGGCACGGTTGCACGTACAAAGCGTTACGCTGTCGCAAGAAATGAAAAGTAAAGGAAAGCAATTAAACATACATAATGAAATACATAATATGAAAGCATGATGACAAAGGGGTTGGAATGGTAGTGTGGTCATGGGCAACACGCCCTGGACAAGCATGACCGTGACATCCTCCCCCACTTAAATGGTTGACGTCCCTGTCAATCGACGCTGTTCAAACTCAGCAATCTTGGCAGCAGCTTGTTGCAGGTCGTCAACACGTTCCCAACTGATCTCTGCATCTGGGAGTCCTTTCCACTTGACGAGGAACTCCTGAACGTCTTTTCTGGGTCTACCCACTCGGCGGGTACGTTCAGCTAAAACTTCTTCCACTTCTTTGTCCTTAGGGTTGGACATTGTAACTGGAGGTCTGACTGACTTGTTACGAGTTTCATCGTCTGGATCGAGATGATGGGGTTTCAAGTTGCTTATGTGGATGACAGGGTGAATCTTCATCTACGGCGGCAGTTGAACCTGATAGGATACCTTCCCGACCTTCTTGATTACTTCAACAGGACCCTTATATTTTCGTACAAGACGTTGATCTCTTTTACTTCGAAATCGGAGCTGTTCTTGTCTCAGTTTGATCAACACCTTGTCTCCGGCTTGGAATTCCAGTGCTCGACGTTTTTGATCAGCCCACTTCTTCATTCGTTTAGACGCCTTCTCTAAATAGGCTCGAGCCATCCGCAGTTTGGTTCCACTCCTTCGTGAAGTTGAACGCTTGGGGGCTCTTCCCTGCATATGGATGGTCCACAATGTGAGGCATGAGTGGTTGTCTCCCACTCACTATCTCGAAAGGAGTCTTTCCGGTAGACGAGCTCTTCTGACAGTTAAAGCTAAATTGTGCCACATCAAGCATCTCGACCCAATTCTTCTGCCTGACATCTATAAAATGACGCAAGTATTCCTCGAGCATACTATTGAATCTTTCTGTCTGTCCATCAGTTTGAGGGTGATAGCTCGACGAGATATTTAAATTCGAGCCTAGCATTTGAAACAGCTCCGTCCAGAAGGTTCCTGTGAATTGGCCATCTCTATCGTTCACAATACTCGCTGGGACGCCCCAAAACTTGACAACATTCTTAAAGAATAGATGTGTTGTCATTTCGGCTGAGCACATCTTTGTTGTTGGGACAAACGTGGCGTATTTTGAAAATCTGTCTACCACTACGAGAATTGCTTCAAATTCTCCGACTTTGGGTAAGTGGGTAATGAAATCAAGGGAAATACACGTACAGGTGACGTGTATGACCGAATGAAGTTTAGTTTCGCATGAGCTCAGTTCGGTTGAAGACGAGAGAACCTCGCCTAAGGTCCGACGAAGTTTCAAAAAAAGAATGGAGAAAAGAATATTGGGGCTTGAGTTCCCCTTAAGGCTGCCCATGTACGAGTAAATGTCATGGTGCCGCACGGTTAGAGAAGCCCGACCGTGACACTAACCATGCCAGTATAGACTGTTCCCGCAAGGAGGTGATCTTGGCCAGTGTGGTTGACACTAGAGAAACTGAGGTTGCCTTGACTTTAGAGCCAGTGGAAAGAAATTATCCAGATGTCTTTCCAGAGGATCTCCTGGGTTTGTCACTGTATCAGGAGATAGCTTCGCTATCAAGTTGGAGCTAGGTATAGCTTCCATCTTGAAGGCTCCTTAAGAATGGCTCTAGCAGAGTTGAAGGAGCTCAAGACTCGGTTCCGAGAGTTGCTGAATAAGGGTTTTATACGCATGAGTGTGTCACCTTAGGGTGCACTAGTGTTGTTTGTGAAGGACGGGTCATTATGCCTTTGTTTTGACTATAGAGAGTTGAATAAAGGTTTTATGTTATTTAAACTTCTAGTTTGTTGGAATTCTTTACTTTAAATAAAAAGGATCGGTTCTTTTGTTTAAGTTGCAAAAGGTTAAATTTCAAGTTCATATAGTAACGTTCAGTTAGTAAACGTTAGAAAGTTGGGTCGTTACAGTCGTGGCACTAGGTTACACCGTCGTGACGCTGTCCTATTTTGCACTCTTGGGTTTCTACCATCAAGCCTAGCATTAACGCTTGTTGGGCGCCTTTTTCTTTATGTTTTCCTCTCTAAGGTTAAAATCGAGCCTAGCATTGCACTACCCAAGGTTCTTTTCTTCATATTTTCACCTCAATTAGTCCATTCTGGTCCAAATTCTAGGTTCCTACAAATTCAACAAATAAAAGCATCACGAACACAACTAGCCAACAAAACCTAAGAAGCACTTTTTTTCAGTTCCATCAAACATTTTCCATATCCATGTCAATAGTGGCCCCATCCTTGCACAGGGAGAGATCAGATGTTAGAGGAAATCTTCTATAAAGAGATTCATCCCCAGCCTAAACATCCTTCCTCAAAGATAAACCTAAAGCATCCCCAACAGTATAGTTCATTTTGTCACGGATTTGATAGGTTTCAAATTCAGGCTATTATGGGTGTAAATGTGAACACCCTTTTACCAATTATAGTCTCTCTTCTCTTATTTCGAATTGGAGATCTTGTTTTTGTAACACACCTATAAGTGATTGGGAGTCTTTTAACTCCATTTATTTCAAAAGTGTTTTTCTTTTTAAAAAGAACACACTGAAAACCCTTCAATGGTTAGAGTAGCTTTTACATATAACTTCTAACTGATCTAGGAATTAAAATTGGAAAACTTTTCTAAAAGAAATTCATTTTCGGCTTATTTTATCCTTTTTGTGCTATTTACTGAATTGTTCTCCATTTCAGTTGCATCCAAACTATAGGGGTAAAAGGAAAGAAAGTATAATCCGATCAAATATATATATGTATAAGTTTGAACAGGTTTGCAAAGCACTGGAAGTGGTGCAGCTGGTTAAAAATTTGCTTTCATATCCTTGTGGCATGAGTTTGACCCTCCGACCTCCAGATTGAATCTTTTTAAATATATTGGTGGTTTTCCTTCTGTCCAGCCAATTTTACACAGCCCACGGCCCATTTGCAGCTCACAGGCCCTTCGCCCAACGAACGCGCTCTTTGCCATTAACCAGATGGTGAACTGCTTCAAAATGCTAAACAGTTTGGTCGGTTTGGTTATGTATATGTGTGACGATTCGGTTCGGTTTCTAAATTTTTGCCTATATTTAGTGGTTCAGTTTTAATTTGACGCTCAAGCTGGATCGATTACACCCCCAGTCTAAACTAACAAAAAAATCAAGGATAATCTGAGTTCACGTCCTTTCCAAATGTGTTGCATACCAAATATGTTTACTGTGTCCGTATTTTTCACTTAAGGTTTCTGAACTTCAATTGAGTGGTCTAGTAATTTCATGCAGGTGTCCTCAGCGTATAGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAAAAACTGTCTTCCAATCTTCAGGTTCCTGTTTCATGCAAAATCCGAATCTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTCAAAAATGCTGTACGAATCCCAGTTCTTGCCAATGGGAATATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGGGTTGAAGGTGTGCTTTCAGCAGAACCCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATTGAGGGCTGTGAAGAAAATACTCGAGACGGTGACCTGAATCAAGCTGATCTGCTGGTGGACTACCTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACGTTTGAATTTCTTTACAGTATGGTGGAGCGGCTAAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATGCTTGACTGCTTCCACAGATTATTGATTGATAGGCTTACTGGTCTTAACATAAAGATTCTTTGCGAAAATTAGATTCATTGTGTTGTTGTATCACTAATATTCACATAAAATTGTCTTTCTTCAAATCAGCTTGGGCACAGTGAAGAAAGAAAAGATTTTGTATTTATTGTTGCGAATTGCACACCCTTAATTGATTTGACTAGGGAAGAGATAGAGAGTCAACATTACCTTTTGGCTTTGCCCATATTATCTACCATGTTGTTTACCATTCTCTTAAACTTTTTTTTTTCTTTTTTTTTTTTTTTTAAGAGTTCAATTGTTAAGTAGCTATGAGAGTGTTATGGATGTGTCAACCTAGTTGAGATATCTTGATGCATCTGTTGATTCCCTCGCCCTATGATTCTTTTTGCTTATAACGTATCATTGTAATTTGACTGTTA

mRNA sequence

TGTGAAAAACCTAATCCATAAACCCCAAAATAGATTTTCTTTTGCTGCGTAAAATCTCAAAGGGAAAATCCTCGACGGAGCCGGCGGCGGCGATGGGCTCCGTAGCCATCGTCATCGTTAGGTTATGAGATCCCCTTCCAATTCTCACCTTCATCTCAAAACTATATTCTCTCTCCGTCAGTCTCTCATGGCTTCCTCTTTCACACAAACCCTTAAACCAGATTTACCTCAAGACCTGGACGACCTTCTCTGCTCCGATTCACAGAAACAGCAACAAGAGGAATGCTTGTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGTTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGACGAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCTATGGTTGATAATTCGGAGCTACCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGGAACATGGAATTTACCACTTGTCAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTACGTCGACCTTAACCTTGGGTGTCCTCAGCGTATAGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAAAAACTGTCTTCCAATCTTCAGGTTCCTGTTTCATGCAAAATCCGAATCTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTCAAAAATGCTGTACGAATCCCAGTTCTTGCCAATGGGAATATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGGGTTGAAGGTGTGCTTTCAGCAGAACCCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATTGAGGGCTGTGAAGAAAATACTCGAGACGGTGACCTGAATCAAGCTGATCTGCTGGTGGACTACCTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACGTTTGAATTTCTTTACAGTATGGTGGAGCGGCTAAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATGCTTGACTGCTTCCACAGATTATTGATTGATAGGCTTACTGGTCTTAACATAAAGATTCTTTGCGAAAATTAGATTCATTGTGTTGTTGTATCACTAATATTCACATAAAATTGTCTTTCTTCAAATCAGCTTGGGCACAGTGAAGAAAGAAAAGATTTTGTATTTATTGTTGCGAATTGCACACCCTTAATTGATTTGACTAGGGAAGAGATAGAGAGTCAACATTACCTTTTGGCTTTGCCCATATTATCTACCATGTTGTTTACCATTCTCTTAAACTTTTTTTTTTCTTTTTTTTTTTTTTTTAAGAGTTCAATTGTTAAGTAGCTATGAGAGTGTTATGGATGTGTCAACCTAGTTGAGATATCTTGATGCATCTGTTGATTCCCTCGCCCTATGATTCTTTTTGCTTATAACGTATCATTGTAATTTGACTGTTA

Coding sequence (CDS)

ATGAGATCCCCTTCCAATTCTCACCTTCATCTCAAAACTATATTCTCTCTCCGTCAGTCTCTCATGGCTTCCTCTTTCACACAAACCCTTAAACCAGATTTACCTCAAGACCTGGACGACCTTCTCTGCTCCGATTCACAGAAACAGCAACAAGAGGAATGCTTGTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGTTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGACGAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCTATGGTTGATAATTCGGAGCTACCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGGAACATGGAATTTACCACTTGTCAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTACGTCGACCTTAACCTTGGGTGTCCTCAGCGTATAGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAAAAACTGTCTTCCAATCTTCAGGTTCCTGTTTCATGCAAAATCCGAATCTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTCAAAAATGCTGTACGAATCCCAGTTCTTGCCAATGGGAATATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGGGTTGAAGGTGTGCTTTCAGCAGAACCCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATTGAGGGCTGTGAAGAAAATACTCGAGACGGTGACCTGAATCAAGCTGATCTGCTGGTGGACTACCTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACGTTTGAATTTCTTTACAGTATGGTGGAGCGGCTAAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATGCTTGA

Protein sequence

MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAISSNA

Homology

[Close]

BLAST of Lsi10G001880 vs. ExPASy Swiss-Prot
Match: Q8K582 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus OX=10116 GN=Dus1l PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.6e-79
Identity = 142/298 (47.65%), Postives = 194/298 (65.10%), Query Frame = 0


Query: 87  WTK-LGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 146
           W++ LG  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69

Query: 147 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 206
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG YGAFL +   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129

Query: 207 KAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 266
           + ++      L VPV+CKIR+FP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189

Query: 267 NWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAE 326
           +W  I AV+ AV IPV ANGNIR ++DV  C+Q+TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 327 WIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 382
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREE 291

[Close]

BLAST of Lsi10G001880 vs. ExPASy Swiss-Prot
Match: Q8C2P3 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus OX=10090 GN=Dus1l PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.5e-79
Identity = 141/298 (47.32%), Postives = 195/298 (65.44%), Query Frame = 0


Query: 87  WTK-LGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 146
           W++ LG  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69

Query: 147 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 206
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG+YGAFL +   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129

Query: 207 KAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 266
           + ++      L VPV+CKIR+FP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189

Query: 267 NWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAE 326
           +W  I AV+ AV IPV ANGNI+ ++DV  C+Q+TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 327 WIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 382
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREE 291

[Close]

BLAST of Lsi10G001880 vs. ExPASy Swiss-Prot
Match: Q6P1R4 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens OX=9606 GN=DUS1L PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.2e-78
Identity = 139/288 (48.26%), Postives = 189/288 (65.62%), Query Frame = 0


Query: 96  IVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTTCQEDRPLFVQ 155
           +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    C EDRPL VQ
Sbjct: 20  VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQ 79

Query: 156 FCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSN 215
           FCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG+YGAFL D   L++ ++      
Sbjct: 80  FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEK 139

Query: 216 LQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKN 275
           L VPV+CKIR+FP +  T+ YA+MLE AGC LL VHGRT+++K      A+W  I AV+ 
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 199

Query: 276 AVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTR 335
           AV IPV ANGNI+ ++DV  CL++TGV+GV+SAE  L NPALF G   A W         
Sbjct: 200 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 259

Query: 336 DGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 382
                  +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 260 -------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREE 291

[Close]

BLAST of Lsi10G001880 vs. ExPASy Swiss-Prot
Match: Q9HGN6 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dus1 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.5e-69
Identity = 139/303 (45.87%), Postives = 192/303 (63.37%), Query Frame = 0


Query: 87  WTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFT--TC 146
           + K+GRPK I+APMVD SELP+R+L R+ GA+  Y+PM HSR+F E+E YRN  F+  T 
Sbjct: 12  YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTI 71

Query: 147 QEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVK 206
            E+RPL +QFC NDP+++L+AA+   PYCD VD+NLGCPQ IA++G YG+FL +N  L++
Sbjct: 72  PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131

Query: 207 AIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRAN 266
           +I+ KL + L +PV+ KIRIFP+ Q T++YA+M+  AG S+LAVHGR R++K      A+
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191

Query: 267 WSAISAV-KNAVRIPVL-ANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTA 326
           W  I  + KN     VL ANGNI H +D+  C++ TGV+GVLSAE  L NP +F    + 
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPSSP 251

Query: 327 EWI------EGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHP 380
                    + CEE      + +  L  DY  L          I+ H+ KL+     IH 
Sbjct: 252 LMTLYPRIDDMCEEYL--NIIREFKLESDYSSL--------SAIKGHLFKLMRPLLSIHT 304

[Close]

BLAST of Lsi10G001880 vs. ExPASy Swiss-Prot
Match: P53759 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DUS1 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-64
Identity = 130/313 (41.53%), Postives = 188/313 (60.06%), Query Frame = 0


Query: 89  KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTT---CQ 148
           K+GRP  IVAPMVD SEL +R+L R+YGA  AYTPMLH+++F  ++KYR   +++     
Sbjct: 25  KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSS 84

Query: 149 EDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKA 208
            DRPL VQFCANDP+ LL AA+ VE  CD VDLNLGCPQ IA++G+YG+FLM+   L+  
Sbjct: 85  VDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHN 144

Query: 209 IVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANW 268
           ++  L  NL+VPV+ KIRIF + + ++NYA+M+ DAG   L VHGR R++K  K   ANW
Sbjct: 145 LINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANW 204

Query: 269 SAISAVKNAV--RIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAE 328
             I  +++ +       ANGNI + ED+  C++  G + V+SAE  L NP +F   +T  
Sbjct: 205 ETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQT-- 264

Query: 329 WIEGCEENTRDGDLNQADLLV----DYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIR 388
                    ++    + D ++      +K C++       ++SH  K+L  +   H  IR
Sbjct: 265 -------KNKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIR 324

Query: 389 EDF-NAQSKLTFE 392
                  +K T+E
Sbjct: 325 STLATMNAKATWE 328

[Close]

BLAST of Lsi10G001880 vs. ExPASy TrEMBL
Match: A0A1S3CHU6 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Cucumis melo OX=3656 GN=LOC103501114 PE=4 SV=1)

HSP 1 Score: 808.9 bits (2088), Expect = 1.0e-230
Identity = 399/426 (93.66%), Postives = 410/426 (96.24%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDL-PQDLDDLLCSDSQKQQQEECLSLT- 60
           MRS SNSHL+LKTIFSLR S MASSFTQTLKPDL PQDLDDLLCS  QKQ+Q+E  SLT 
Sbjct: 1   MRSLSNSHLYLKTIFSLRNSFMASSFTQTLKPDLPPQDLDDLLCSHPQKQRQDESSSLTG 60

Query: 61  -KSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120
             SNDS LLLGSP+GYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  SNSNDSKLLLGSPTGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180
           +AAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 DAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARM 240
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIFPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQE 300
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDV+NCLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQE 300

Query: 301 TGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPW 360
           TGVEGVLSAE LLENPALFAGFRTAEWIEG EENTRDG+L+QADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGQEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHAS 420
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVK+PLYIKDSH  
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHVP 420

Query: 421 AISSNA 424
           AISSNA
Sbjct: 421 AISSNA 426

[Close]

BLAST of Lsi10G001880 vs. ExPASy TrEMBL
Match: A0A6J1FWR0 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Cucurbita moschata OX=3662 GN=LOC111448913 PE=4 SV=1)

HSP 1 Score: 805.8 bits (2080), Expect = 8.4e-230
Identity = 391/421 (92.87%), Postives = 406/421 (96.44%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRSPSNSHLHLK+I SLR+S MASSFTQT   D PQDLDDLLCSD   Q Q+EC SLTKS
Sbjct: 1   MRSPSNSHLHLKSILSLRKSFMASSFTQT---DFPQDLDDLLCSDPHTQPQDECSSLTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           NDSTLLLGSPSGYLSGESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  NDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIVEK++SNLQVPVSCKIR+FPNLQDTINYARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDVHNCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTA+W  GCEE++RDG+L+QADLLVDYLKLCEKYPVPWRMI
Sbjct: 301 EGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMI 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVE+LRELQVKIPLYIKDS ASAIS
Sbjct: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVEQLRELQVKIPLYIKDSPASAIS 418

Query: 421 S 422
           S
Sbjct: 421 S 418

[Close]

BLAST of Lsi10G001880 vs. ExPASy TrEMBL
Match: A0A0A0LTG2 (Dus domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G428390 PE=4 SV=1)

HSP 1 Score: 798.1 bits (2060), Expect = 1.8e-227
Identity = 397/426 (93.19%), Postives = 405/426 (95.07%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDL-PQDLDDLLCSDSQKQQQEECLSLTK 60
           MRS SNSHLHLK IFSL  SLMASS  QTLKPDL PQDLDDLLCS S KQ Q E  SLT 
Sbjct: 1   MRSLSNSHLHLKYIFSLPNSLMASSLIQTLKPDLAPQDLDDLLCSPSHKQPQHESSSLTN 60

Query: 61  --SNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120
             SNDST LLGSP+GYLS ESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  STSNDSTPLLGSPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180
           EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARM 240
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIFPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQE 300
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDV++CLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQE 300

Query: 301 TGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPW 360
           TGVEGVLSAE LLENPALFAGFRTAEWIEG EENTRDG+L+QADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHAS 420
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVK+PLYIKDSHA 
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHAL 420

Query: 421 AISSNA 424
           AISSNA
Sbjct: 421 AISSNA 426

[Close]

BLAST of Lsi10G001880 vs. ExPASy TrEMBL
Match: A0A6J1JGU3 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Cucurbita maxima OX=3661 GN=LOC111484251 PE=4 SV=1)

HSP 1 Score: 797.3 bits (2058), Expect = 3.0e-227
Identity = 387/421 (91.92%), Postives = 404/421 (95.96%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRSPSNSHLHLK+I SLR+S MASS  QT   D PQDLDDLLCSD   Q+Q+EC SLTKS
Sbjct: 1   MRSPSNSHLHLKSILSLRKSFMASSCAQT---DFPQDLDDLLCSDPHTQRQDECSSLTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           NDSTLLLGSPSGYL+GESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  NDSTLLLGSPSGYLNGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIVEK++SNLQVPVSCKIR+FPNLQDTINYARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAI AVKNA+RIPVLANGNIRHMEDV+NCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAIRAVKNALRIPVLANGNIRHMEDVNNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTA+W  GCEE++RDG+L+QADLLVDYLKLCEKYPVPWRMI
Sbjct: 301 EGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMI 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVKIPLYIKDS ASAIS
Sbjct: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAIS 418

Query: 421 S 422
           S
Sbjct: 421 S 418

[Close]

BLAST of Lsi10G001880 vs. ExPASy TrEMBL
Match: A0A6J1D4R6 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Momordica charantia OX=3673 GN=LOC111017278 PE=4 SV=1)

HSP 1 Score: 788.5 bits (2035), Expect = 1.4e-224
Identity = 376/422 (89.10%), Postives = 407/422 (96.45%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRS + SHLHLK++FSL  SLMASSF+QT+KPDLP+ LDDLLCS+ Q+QQ+EEC S+TKS
Sbjct: 1   MRSLAISHLHLKSVFSLHSSLMASSFSQTIKPDLPEHLDDLLCSNQQQQQREECSSVTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           ++ +LLLGSP+GYLSG+SRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  DEPSLLLGSPNGYLSGDSRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIV+KLSSNLQVPVSCKIRIFPNLQDT+NYARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVQKLSSNLQVPVSCKIRIFPNLQDTLNYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAV+IPVLANGNIRHMEDV+NCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVQIPVLANGNIRHMEDVNNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTAEW+EGC+EN RDG+L+QA LLV+YLKLCE+YPVPWR+I
Sbjct: 301 EGVLSAETLLENPALFAGFRTAEWVEGCDENCRDGNLDQAALLVEYLKLCEQYPVPWRII 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHK+LGDWFKIHPH+REDFNAQ KLTFEFLY MV+RLRELQVKIPLY+KDS AS IS
Sbjct: 361 RSHVHKMLGDWFKIHPHVREDFNAQFKLTFEFLYIMVDRLRELQVKIPLYLKDSPASEIS 420

Query: 421 SN 423
           SN
Sbjct: 421 SN 422

[Close]

BLAST of Lsi10G001880 vs. NCBI nr
Match: XP_038901742.1 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Benincasa hispida])

HSP 1 Score: 820.5 bits (2118), Expect = 6.8e-234
Identity = 398/423 (94.09%), Postives = 407/423 (96.22%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRSP NSHLH KTIFS R SLMASSFTQTLKPDLPQDLDD LCSD Q QQQ+EC S TKS
Sbjct: 1   MRSPYNSHLHFKTIFSFRSSLMASSFTQTLKPDLPQDLDDRLCSDPQNQQQQECSSFTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           NDSTLLL SPSGYL GESRIERAWAHW KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  NDSTLLLASPSGYLCGESRIERAWAHWRKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIF NLQDTINYARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFSNLQDTINYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVR+PVLANGNIRHMEDV+NCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRVPVLANGNIRHMEDVYNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTAEWI+G EENTRDG+L+QADLLVDYLK CEKYPVPWRMI
Sbjct: 301 EGVLSAETLLENPALFAGFRTAEWIKGHEENTRDGNLDQADLLVDYLKFCEKYPVPWRMI 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVKIPLYIKDSHASAI+
Sbjct: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSHASAIA 420

Query: 421 SNA 424
           SNA
Sbjct: 421 SNA 423

[Close]

BLAST of Lsi10G001880 vs. NCBI nr
Match: XP_008462837.1 (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Cucumis melo])

HSP 1 Score: 808.9 bits (2088), Expect = 2.1e-230
Identity = 399/426 (93.66%), Postives = 410/426 (96.24%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDL-PQDLDDLLCSDSQKQQQEECLSLT- 60
           MRS SNSHL+LKTIFSLR S MASSFTQTLKPDL PQDLDDLLCS  QKQ+Q+E  SLT 
Sbjct: 1   MRSLSNSHLYLKTIFSLRNSFMASSFTQTLKPDLPPQDLDDLLCSHPQKQRQDESSSLTG 60

Query: 61  -KSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120
             SNDS LLLGSP+GYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  SNSNDSKLLLGSPTGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180
           +AAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 DAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARM 240
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIFPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQE 300
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDV+NCLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQE 300

Query: 301 TGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPW 360
           TGVEGVLSAE LLENPALFAGFRTAEWIEG EENTRDG+L+QADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGQEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHAS 420
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVK+PLYIKDSH  
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHVP 420

Query: 421 AISSNA 424
           AISSNA
Sbjct: 421 AISSNA 426

[Close]

BLAST of Lsi10G001880 vs. NCBI nr
Match: XP_022944464.1 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Cucurbita moschata])

HSP 1 Score: 805.8 bits (2080), Expect = 1.7e-229
Identity = 391/421 (92.87%), Postives = 406/421 (96.44%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRSPSNSHLHLK+I SLR+S MASSFTQT   D PQDLDDLLCSD   Q Q+EC SLTKS
Sbjct: 1   MRSPSNSHLHLKSILSLRKSFMASSFTQT---DFPQDLDDLLCSDPHTQPQDECSSLTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           NDSTLLLGSPSGYLSGESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  NDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIVEK++SNLQVPVSCKIR+FPNLQDTINYARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDVHNCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTA+W  GCEE++RDG+L+QADLLVDYLKLCEKYPVPWRMI
Sbjct: 301 EGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMI 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVE+LRELQVKIPLYIKDS ASAIS
Sbjct: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVEQLRELQVKIPLYIKDSPASAIS 418

Query: 421 S 422
           S
Sbjct: 421 S 418

[Close]

BLAST of Lsi10G001880 vs. NCBI nr
Match: KAG7011024.1 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 805.1 bits (2078), Expect = 3.0e-229
Identity = 391/421 (92.87%), Postives = 405/421 (96.20%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRSPSNSHLHLK+I SLR+S MASSFTQT   D PQDLDDLLCSD   Q Q+EC SLTKS
Sbjct: 1   MRSPSNSHLHLKSILSLRKSFMASSFTQT---DFPQDLDDLLCSDPHTQPQDECSSLTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           NDSTLLLGSPSGYLSGESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  NDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIVEK++SNLQVPVSCKIR+FPNLQDTI YARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTITYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDVHNCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTA+W  GCEE++RDG+L+QADLLVDYLKLCEKYPVPWRMI
Sbjct: 301 EGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMI 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVKIPLYIKDS ASAIS
Sbjct: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAIS 418

Query: 421 S 422
           S
Sbjct: 421 S 418

[Close]

BLAST of Lsi10G001880 vs. NCBI nr
Match: XP_023512932.1 (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 804.3 bits (2076), Expect = 5.1e-229
Identity = 391/421 (92.87%), Postives = 406/421 (96.44%), Query Frame = 0


Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKS 60
           MRSPSNSHLHLK+I SLR+S MASS  QT   DLPQDLDDLLCSD   Q+Q+EC SLTKS
Sbjct: 1   MRSPSNSHLHLKSILSLRKSFMASSRAQT---DLPQDLDDLLCSDPHTQRQDECSSLTKS 60

Query: 61  NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120
           NDSTLLLGSPSGYLSGESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA
Sbjct: 61  NDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAA 120

Query: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180
           YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL
Sbjct: 121 YTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNL 180

Query: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLED 240
           GCPQRIARRGNYGAFLMDNLPLVKAIVEK++SNLQVPVSCKIR+FPNLQDTINYARMLED
Sbjct: 181 GCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLED 240

Query: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGV 300
           AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDVHNCLQETGV
Sbjct: 241 AGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGV 300

Query: 301 EGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMI 360
           EGVLSAE LLENPALFAGFRTA+W  GCEE++RDG+L+QADLLVDYLKLCEKYPVPWRMI
Sbjct: 301 EGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMI 360

Query: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAIS 420
           RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVKIPLYIKDS ASAIS
Sbjct: 361 RSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAIS 418

Query: 421 S 422
           S
Sbjct: 421 S 418

[Close]

BLAST of Lsi10G001880 vs. TAIR 10
Match: AT5G67220.1 (FMN-linked oxidoreductases superfamily protein )

HSP 1 Score: 612.8 bits (1579), Expect = 2.0e-175
Identity = 296/403 (73.45%), Postives = 339/403 (84.12%), Query Frame = 0


Query: 11  LKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKSNDSTLLLGSP 70
           L+T  SL     A +     KPD  Q LDD+LCS+ +  Q EE +    ++     LGSP
Sbjct: 11  LRTRKSLISQTRAMTQNPDPKPDPSQVLDDILCSEQRDGQIEETVDTAPAS-----LGSP 70

Query: 71  SGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIF 130
           S  LS ++R+ERAWAHW KLGRPK IVAPMVDNSELPFRLLC+KYGA+AAYTPMLHSRIF
Sbjct: 71  SRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIF 130

Query: 131 TENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRG 190
           TE EKYRN EFTTC+EDRPLFVQFCANDPD LLEAA+RVEPYCDYVD+NLGCPQRIARRG
Sbjct: 131 TETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRG 190

Query: 191 NYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHG 250
           NYGAFLMDNLPLVK++VEKL+ NL VPVSCKIRIFPNL+DT+ YA+MLEDAGCSLLAVHG
Sbjct: 191 NYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHG 250

Query: 251 RTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLL 310
           RTRDEKDGKKFRA+WSAI  VKNA+RIPVLANGN+R +EDV NC++ETGVEGVLSAE LL
Sbjct: 251 RTRDEKDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLL 310

Query: 311 ENPALFAGFRTAEWI-EGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLG 370
           ENPA FAGFRTAEW  +  EE   DG L+Q DL+V+YLKLCEK+PVPWRMIRSHVHK+LG
Sbjct: 311 ENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLG 370

Query: 371 DWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIK 413
           +WF+IHP +RE  NAQ+ LTFEFLY +V++LREL  ++PLY K
Sbjct: 371 EWFRIHPQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408

[Close]

BLAST of Lsi10G001880 vs. TAIR 10
Match: AT3G49640.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-30
Identity = 79/247 (31.98%), Postives = 121/247 (48.99%), Query Frame = 0


Query: 94  KLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNME------------- 153
           KL++APMV    L FR+L  +YGA+  Y   +      + E+  N+              
Sbjct: 6   KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 65

Query: 154 --FTTCQEDRPLFV-QFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLM 213
             F+TC E++   V Q   +D    L+A+  V      +D+N+GCP+  + +G  GA L+
Sbjct: 66  VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 125

Query: 214 DNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKD 273
               L+  I+  L  NL VPV+CKIR+  +  DT+  AR +E  G   LAVHG  R   D
Sbjct: 126 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHG--RKIAD 185

Query: 274 GKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFA 325
             +  A W  I+ V  A+ IPV+ANG++   +D       TG   V+ A   + N ++F+
Sbjct: 186 RPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 245

[Close]

BLAST of Lsi10G001880 vs. TAIR 10
Match: AT3G49640.2 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 112.8 bits (281), Expect = 6.5e-25
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 0


Query: 138 NMEFTTCQEDRPLFV-QFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFL 197
           N+ F+TC E++   V Q   +D    L+A+  V      +D+N+GCP+  + +G  GA L
Sbjct: 26  NVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAAL 85

Query: 198 MDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEK 257
           +    L+  I+  L  NL VPV+CKIR+  +  DT+  AR +E  G   LAVHG  R   
Sbjct: 86  LSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHG--RKIA 145

Query: 258 DGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALF 317
           D  +  A W  I+ V  A+ IPV+ANG++   +D       TG   V+ A   + N ++F
Sbjct: 146 DRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIF 205

Query: 318 AGFRTAEW 325
           +    + W
Sbjct: 206 SPKGKSHW 211

[Close]

BLAST of Lsi10G001880 vs. TAIR 10
Match: AT4G38890.1 (FMN-linked oxidoreductases superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-16
Identity = 53/200 (26.50%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 92  RPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLF 151
           R KL +AP+     LPFR LC+  GA+     M       + +            +    
Sbjct: 337 RDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 396

Query: 152 VQFCANDPDVLLEAARRVEPYC--DYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEK 211
           VQ C + PD +      ++  C  D++D+N+GCP  +    + G+ L++    +K IVE 
Sbjct: 397 VQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIVEV 456

Query: 212 LSSNLQVPVSCKIR--IFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSA 271
            SS ++ P++ K+R   F       +    + + G + + +HGR+R ++  K   A+W  
Sbjct: 457 SSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKS--ADWDY 516

Query: 272 I-SAVKNA-VRIPVLANGNI 286
           I    KNA   + V+ NG++
Sbjct: 517 IYQCTKNATTNLQVIGNGDV 534

The following BLAST results are available for this feature:

BLAST of Lsi10G001880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K582	2.6e-79	47.65	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus OX=101...	[more]
Q8C2P3	4.5e-79	47.32	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus OX=10090 GN...	[more]
Q6P1R4	2.2e-78	48.26	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens OX=9606 GN=...	[more]
Q9HGN6	5.5e-69	45.87	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (st...	[more]
P53759	1.4e-64	41.53	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (str...	[more]

BLAST of Lsi10G001880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHU6	1.0e-230	93.66	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1FWR0	8.4e-230	92.87	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Cucurbita moschata OX=36...	[more]
A0A0A0LTG2	1.8e-227	93.19	Dus domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G428390 PE=4 SV...	[more]
A0A6J1JGU3	3.0e-227	91.92	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1D4R6	1.4e-224	89.10	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Momordica charantia OX=3...	[more]

BLAST of Lsi10G001880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901742.1	6.8e-234	94.09	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Benincasa hispida]	[more]
XP_008462837.1	2.1e-230	93.66	PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Cucumis melo]	[more]
XP_022944464.1	1.7e-229	92.87	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Cucurbita moschata]	[more]
KAG7011024.1	3.0e-229	92.87	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like protein [Cucurbita argyrosp...	[more]
XP_023512932.1	5.1e-229	92.87	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of Lsi10G001880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67220.1	2.0e-175	73.45	FMN-linked oxidoreductases superfamily protein	[more]
AT3G49640.1	5.2e-30	31.98	Aldolase-type TIM barrel family protein	[more]
AT3G49640.2	6.5e-25	34.04	Aldolase-type TIM barrel family protein	[more]
AT4G38890.1	5.6e-16	26.50	FMN-linked oxidoreductases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035587	DUS-like, FMN-binding domain	PFAM	PF01207	Dus	coord: 96..386 e-value: 6.3E-73 score: 245.6
IPR035587	DUS-like, FMN-binding domain	CDD	cd02801	DUS_like_FMN	coord: 94..324 e-value: 1.20324E-106 score: 312.892
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 92..324 e-value: 4.5E-80 score: 270.3
None	No IPR available	PANTHER	PTHR11082:SF35	BNAA09G07510D PROTEIN	coord: 74..413
None	No IPR available	PANTHER	PTHR11082	TRNA-DIHYDROURIDINE SYNTHASE	coord: 74..413
None	No IPR available	SUPERFAMILY	51395	FMN-linked oxidoreductases	coord: 93..369
IPR018517	tRNA-dihydrouridine synthase, conserved site	PROSITE	PS01136	UPF0034	coord: 176..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G001880.1	Lsi10G001880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002943	tRNA dihydrouridine synthesis
biological_process	GO:0008033	tRNA processing
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0017150	tRNA dihydrouridine synthase activity
molecular_function	GO:0003824	catalytic activity