Lsi10G001250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G001250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	chr10: 1970659 .. 1971714 (+)
RNA-Seq Expression	Lsi10G001250
Synteny	Lsi10G001250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGATTTTAGGGTTTTGCTGCTCGGTTGTTTGATGAATCAAGCAAATGATTTATATCTGTTTTGTTGCCAATGCCCTTTTCCCCCTTTTTGTTTATCTCACTGCTTTATGGCTGTGTTTGTTTTGTTTAGACGGTACAAAGACAGGTATAGAAACTTGGATTTATATAATACATAGTTAATTTGTGGGTTTGTTTTTTAAAATTTTCCAGGTGTTTAGTTTTGGTTTAAGGGCAATCTATAAGATTAACAAATTCATATTCTAAGATACATGAATTTGACATAATGAATTCTGTTTCTTCTTCGTAAAGATTGTCTGTTGGTGATTTGATAGGTAGGTTGGCCCTTGTTGTTCCCTTTCCATTTTTGTTTGTTCCGTATATCCCAGTTTCTCCAGATTATAGCTGATTTGATTTCTATTTTATTGGGATAATATAGAAAGATGATATGACAAGATTTTCTTGATTAGACAGAAAGATCCCATCATTCTATAAGTCCTGAATTATAACTCAATTCATCCATGCTTACCCAACACTTCTAAATTTCATATCATCTTCACCAAGCTGTTTTTGATAAATTTTTGGAAACTGATAGTTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTATGGAGTCGAAGACGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTGAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTAAAAATGCTTGGACTCTCCATTTCATCATTTTTTTTTCTCTTAAATATAACTTGTAGTCTGAAAACTTTTGTAGTTCTGTGAAATTTTTTAGTTTCCCAGCATTTTGTCGAACTCCTCCATAAATTTCAAACGACAAGTAAGAAATCATATCATTAACTGCTATAAATTCCCCTTATTTACAGC

mRNA sequence

ATGAAATTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTATGGAGTCGAAGACGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTGAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTAAAAATGCTTGGACTCTCCATTTCATCATTTTTTTTTCTCTTAAATATAACTTGTAGTCTGAAAACTTTTGTAGTTCTGTGAAATTTTTTAGTTTCCCAGCATTTTGTCGAACTCCTCCATAAATTTCAAACGACAAGTAAGAAATCATATCATTAACTGCTATAAATTCCCCTTATTTACAGC

Coding sequence (CDS)

ATGAAATTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTATGGAGTCGAAGACGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTGAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MKLKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKVKSGTSVGIKWVKNQYQKKVSK

Homology

[Close]

BLAST of Lsi10G001250 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   KLKMGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAK 61
           KLKMGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAK
Sbjct: 83  KLKMGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAK 142

Query: 62  AVATVGAQKVKSGTSVGIKWVKNQYQKKVSK 92
           AVATVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 143 AVATVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

[Close]

BLAST of Lsi10G001250 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.8e-35
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 5  MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 64
          MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 65 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 92
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of Lsi10G001250 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 5  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 64
          MGSKAPSWADQWGSG++G E+DDNK VTKK SS+G SSKKMAE KAAASAGF KAKA A+
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 65 VGAQKVKSGTSVGIKWVKNQYQKKVS 91
          VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 VGAQKVKSGTSVGLKWVKKQYQKKSS 85

[Close]

BLAST of Lsi10G001250 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.6e-22
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 5  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 64
          MGSKAPSWADQWG+G +GV+++D+K VTK  SS+G +  K+ EVKAAASAGF KAK+ A 
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 65 VGAQKVKSGTSVGIKWVKNQYQKKVS 91
          VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61 VGAQKVKAGTSAGIKWVKKQYQKKGS 84

[Close]

BLAST of Lsi10G001250 vs. ExPASy TrEMBL
Match: A0A2P5EE64 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_203810 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 5   MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 64
           MGSKAPSW+DQWG  N+GVE DD+KA T KG  +G SSKKMAE KA ASAG  KAKA A 
Sbjct: 12  MGSKAPSWSDQWGGNNFGVEGDDDKAGTNKGKGSG-SSKKMAEAKAMASAGLGKAKAAAA 71

Query: 65  V-----------GAQKVKSGTSVGIKWVKNQYQKKVSK 92
           V           GAQKVKSGTS+GIKWVKNQYQK+ SK
Sbjct: 72  VGADKAKVAAIFGAQKVKSGTSLGIKWVKNQYQKRTSK 108

[Close]

BLAST of Lsi10G001250 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 5  MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 64
          MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 65 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 92
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of Lsi10G001250 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 2   KLKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKA 61
           KLKMGSKAPSWADQWGSGNYGVEDDD K V KKGSSNG+SSKKM EVKAAASAGFVKAKA
Sbjct: 88  KLKMGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSSNGSSSKKMTEVKAAASAGFVKAKA 147

Query: 62  VATVGAQKVKSGTSVGIKWVKNQYQKKVSK 92
           VA VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 148 VAAVGAQKVKSGTSVGIKWVKNQYQKKVSK 176

[Close]

BLAST of Lsi10G001250 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 2.9e-33
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 5  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 64
          MGSKAPSWADQWGSG+YGVEDDDN A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 65 VGAQKVKSGTSVGIKWVKNQYQKKVSK 92
          VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 87

[Close]

BLAST of Lsi10G001250 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 5  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 64
          MGSKAPSWADQWGSG+YGVEDDDN A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 65 VGAQKVKSGTSVGIKWVKNQYQKKVS 91
          VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86

[Close]

BLAST of Lsi10G001250 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 2   KLKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKA 61
           KLKMGSKAPSWADQWGSGNYGVEDDD K V KKGS NG+SSKKM EVKAAASAGFVKAKA
Sbjct: 77  KLKMGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKA 136

Query: 62  VATVGAQKVKSGTSVGIKWVKNQYQKK 89
           VA VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 137 VAAVGAQKVKSGTSVGIKWVKNQYQKK 162

[Close]

BLAST of Lsi10G001250 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 11 SWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 70
          SWA+QW S      +  +   T  G   G +S K    K    AG  K KA A+ G +KV
Sbjct: 5  SWAEQWDS------NQQSSGKTTHGGEGGGASSK---YKEKVGAGLGKTKAAASSGLKKV 64

Query: 71 KSGTSVGIKWVKNQYQKKVSK 92
          K GTS+G+ WVK++Y K  +K
Sbjct: 65 KIGTSLGLNWVKDKYNKTTTK 76

[Close]

BLAST of Lsi10G001250 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 11 SWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 70
          SWADQW +     +     +     SS   ++    + K     G  K KAVA+ G +K+
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGFKKL 64

Query: 71 KSGTSVGIKWVKNQYQKKVSK 92
          K+G+++G +WVK++Y K   K
Sbjct: 65 KTGSAIGFRWVKDKYHKTTHK 85

[Close]

BLAST of Lsi10G001250 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.8e-04
Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 0


Query: 4   KMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 63
           KM S+APSWADQWG+G  GV   +     KK  +   S K          AG  KAK V 
Sbjct: 572 KMASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGK--------TKAGINKAKIV- 631

Query: 64  TVGAQKVKSGTSVGIKWVKNQYQKK 89
                       +G+ W+KN  Q+K
Sbjct: 632 ----------VFIGVNWMKNLVQRK 637

The following BLAST results are available for this feature:

BLAST of Lsi10G001250 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G001250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR11	1.4e-36	97.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1	[more]
A0A5D3DKS5	5.8e-35	97.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5C7HG95	1.7e-26	82.56	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1	[more]
V4UEV4	9.6e-22	70.93	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ...	[more]
A0A2P5EE64	2.8e-21	67.35	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orien...	[more]

BLAST of Lsi10G001250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059574.1	1.2e-34	97.73	hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865...	[more]
KAG7034974.1	1.7e-33	93.33	hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7010736.1	2.9e-33	91.95	hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570886.1	4.2e-32	90.70	hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604861.1	1.2e-31	91.95	hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi10G001250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	1.2e-05	39.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	5.2e-04	32.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11740.1	6.8e-04	36.47	ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 5..91
None	No IPR available	PANTHER	PTHR33386:SF13	ANKYRIN REPEAT PROTEIN	coord: 5..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G001250.1	Lsi10G001250.1	mRNA