Lsi10G000980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G000980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal_L30 domain-containing protein
Location	chr10: 1552782 .. 1554024 (-)
RNA-Seq Expression	Lsi10G000980
Synteny	Lsi10G000980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATGTCCAGCAACCCAAATGGAAAATAAGTAATAACTAAATGAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACAGCCTACGATCTTCTCTTCGTCAGTTCGTCGTCAACGCAAGCCCCTCCTCATCTTCTTCTTGTTTATTCGACTGAGCAACTCTATTTTCCAGACCTACGCCGTTCGCCGCCGAGCGTCAACCGACCACGCCTCAACCTCGCCATTGACCATCTCGCCGCCCTTTGCCTTGTCGCCGCCACCGCCGGTAAATTTCAAAGCTCTCTGTTTTCTCCCTCTTTTTTCACTCTCTTTTGAAACCTCCTTTAACTTTAACCTAAATTATTATGTAGATAGTTCTTAATTTTTTAGATTGACAAATCGCCGGATCCTATCGTATTTGTCTCTCGTATTAGTATCTGTGTCTGTACTTCATAGCTTTTTACTTTCTAGAACATTTCTTTTAGAGGACTTTATCGAAAGCTTCAAGTGGATATGAAGATGAAGTAAGTATCTATTTGAGATGAAAAATCGTGGCATAGATGTGGTTTCTACTTAAAACTATCATCTATATCTTTTTATGTTTTAGTTGTGCAACTAGAGCATTTGGTAGAGCTTTCAATCTATTGAAGATGTTCATTTGTTTACTCGAAATTTGGAAACTGCAAAAGTTATCCTGCCCAACAAATTAAAAGATTTTGTTGAGGTGCTTAGATGAGATTGTTGATATGTTTGCAGAGAAAACTGTTTCTTAATCTTTGTTTTGTAGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGCACAATAGAGGCGTTGCGGCTGCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTTGCTTTATATACATGTTCTCTACTGCGCTCATGCACACACTACAGAAAAGTCTCATGGGGACTGAATGTTGAATGCTGTTGTTTGTTTTTTTTGTTATTTGATTGTAGGTAAAGCGATTAATTGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCTCTCCGACCTCCGTTAGTTGTAAATCACCTTCCGGCTTCAAGCTCTGCTCCTGCCTCTTGA

mRNA sequence

ATAATGTCCAGCAACCCAAATGGAAAATAAGTAATAACTAAATGAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACAGCCTACGATCTTCTCTTCGTCAGTTCGTCGTCAACGCAAGCCCCTCCTCATCTTCTTCTTGTTTATTCGACTGAGCAACTCTATTTTCCAGACCTACGCCGTTCGCCGCCGAGCGTCAACCGACCACGCCTCAACCTCGCCATTGACCATCTCGCCGCCCTTTGCCTTGTCGCCGCCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGCACAATAGAGGCGTTGCGGCTGCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATTGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCTCTCCGACCTCCGTTAGTTGTAAATCACCTTCCGGCTTCAAGCTCTGCTCCTGCCTCTTGA

Coding sequence (CDS)

ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGCACAATAGAGGCGTTGCGGCTGCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATTGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCTCTCCGACCTCCGTTAGTTGTAAATCACCTTCCGGCTTCAAGCTCTGCTCCTGCCTCTTGA

Protein sequence

MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS

Homology

[Close]

BLAST of Lsi10G000980 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 73
          L IT V+G  GT+  HR  + +L L++   +V+R +TP VRGM+Q V+ LIVVE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]

BLAST of Lsi10G000980 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 73
          L IT ++G  GT+  HR  + +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Lsi10G000980 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 73
          L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ L+ VE
Sbjct: 3  LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]

BLAST of Lsi10G000980 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 73
          L IT ++G  GT+  HR  + +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Lsi10G000980 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 16 SPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 73
          S ++ +TL + M G    HR+ + A+ L K NRTV   +TPTV+GM+++V  L+ VE
Sbjct: 2  SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]

BLAST of Lsi10G000980 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+ SSA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. ExPASy TrEMBL
Match: A0A6J1CI25 (uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011134 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.2e-48
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRT+EALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPA 108
           M+QQVKRL+VVETEEMYKARKQKVEQHKALRPPLVVNHLP  SS  A
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPSSTSA 107

[Close]

BLAST of Lsi10G000980 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+EQH+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLPA SSA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+ SSA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+ SSA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Lsi10G000980 vs. NCBI nr
Match: XP_038901296.1 (50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal protein L30 [Benincasa hispida] >XP_038901298.1 50S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           MLQQVKRLIVVETEEMYKARKQKVEQHKALRPP+VV+HLPA  S  AS
Sbjct: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLPAPISPLAS 108

[Close]

BLAST of Lsi10G000980 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 140.2 bits (352), Expect = 9.8e-34
Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRT+EA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNH-LPASSSAPAS 109
           M+ QVKR++VVETEEMY ARK+    HKALRPPLVV+H  PA+ S+  S
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSSNMS 109

The following BLAST results are available for this feature:

BLAST of Lsi10G000980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	1.2e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	1.2e-04	46.30	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
C3PL27	2.1e-04	40.74	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]
A4QBL5	2.1e-04	46.30	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A8ZV75	2.1e-04	42.11	50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]

BLAST of Lsi10G000980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUA4	1.4e-48	93.52	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A1S3C214	4.1e-48	90.74	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	4.1e-48	90.74	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1CI25	9.2e-48	92.52	uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A0A0LN29	1.6e-47	90.74	Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160...	[more]

BLAST of Lsi10G000980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512952.1	5.9e-49	95.37	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
XP_022944386.1	2.9e-48	93.52	uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet...	[more]
KAG7010749.1	3.8e-48	93.52	rpmD [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008455933.1	8.5e-48	90.74	PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 5...	[more]
XP_038901296.1	1.5e-47	93.52	50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal prot...	[more]

BLAST of Lsi10G000980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	9.8e-34	64.22	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 20..69 e-value: 9.2E-16 score: 57.5
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 19..72 e-value: 2.7E-18 score: 63.4
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 1..106
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 16..73 score: 14.835123
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 19..72 e-value: 5.05124E-16 score: 64.3646
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 17..78 e-value: 5.0E-18 score: 66.3
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 18..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..108
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G000980.1	Lsi10G000980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome