Lsi10G000760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G000760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Signaling peptide TAXIMIN 2
Location	chr10: 1307286 .. 1307967 (+)
RNA-Seq Expression	Lsi10G000760
Synteny	Lsi10G000760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGGTTCGATTTTTATTTTTATTTTTTTATTTTTTTTTCAAAGGTTTGGAAATTGGAACCGTCTTGGAAACTAAATCGAAAGAAAAGTAAGCCCTGCGCTGCTCCGCACTGCAACACACACGAACCTTCAAAAATCCCCACTTCCCAAAACTACCCCTACGACTATTCCAATTACCCCATAAACCCATTTGGTTCCACGTCTCCACTTCAAGGGCAATCAAGTGAATTCACCCACCAACAAAGTAAATATAAACTCCCTGTCCGTCCGAATCAATAAAGTGGCTATATCCTTGCTTCAATTTAATCGAGATGGGAGATTGCAGGCCATTGGGTTTCTTGTTGGGGCTGCCATTTGCCTTGGTTGCCTTAGTTTTATCTGTAATTGGGGCAGTCATCTGGATCATTGGGTGAGTTTTTCTTATCTGTTTCTGTTGCCCTTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGTTGAAGTGATTAAAATTGACAAGTACTGAAATGGGTTGGGGCTATTTTTCTGTTTCTATTGCAGATCTGTGCTGAGTTGCCTGTGTCCGTGTTGCGTGTGCTTTGCGGGGATTGCAAATTTGGCGGTGGGGCTTGTCAAACTTCCGGTCAAGGTGCTCCGATGGTTCACTCATCAAATACCCTGTTGA

mRNA sequence

CCGGGTTCGATTTTTATTTTTATTTTTTTATTTTTTTTTCAAAGGTTTGGAAATTGGAACCGTCTTGGAAACTAAATCGAAAGAAAAGTAAGCCCTGCGCTGCTCCGCACTGCAACACACACGAACCTTCAAAAATCCCCACTTCCCAAAACTACCCCTACGACTATTCCAATTACCCCATAAACCCATTTGGTTCCACGTCTCCACTTCAAGGGCAATCAAGTGAATTCACCCACCAACAAAGTAAATATAAACTCCCTGTCCGTCCGAATCAATAAAGTGGCTATATCCTTGCTTCAATTTAATCGAGATGGGAGATTGCAGGCCATTGGGTTTCTTGTTGGGGCTGCCATTTGCCTTGGTTGCCTTAGTTTTATCTGTAATTGGGGCAGTCATCTGGATCATTGGATCTGTGCTGAGTTGCCTGTGTCCGTGTTGCGTGTGCTTTGCGGGGATTGCAAATTTGGCGGTGGGGCTTGTCAAACTTCCGGTCAAGGTGCTCCGATGGTTCACTCATCAAATACCCTGTTGA

Coding sequence (CDS)

ATGGGAGATTGCAGGCCATTGGGTTTCTTGTTGGGGCTGCCATTTGCCTTGGTTGCCTTAGTTTTATCTGTAATTGGGGCAGTCATCTGGATCATTGGATCTGTGCTGAGTTGCCTGTGTCCGTGTTGCGTGTGCTTTGCGGGGATTGCAAATTTGGCGGTGGGGCTTGTCAAACTTCCGGTCAAGGTGCTCCGATGGTTCACTCATCAAATACCCTGTTGA

Protein sequence

MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLPVKVLRWFTHQIPC

Homology

[Close]

BLAST of Lsi10G000760 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-30
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFL+GLPFALVALVL+++GAVIWIIG+VLSCLCPCC CFA +AN AV L+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVLRWFTH IPC
Sbjct: 61 IKVLRWFTHSIPC 73

[Close]

BLAST of Lsi10G000760 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-22
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 2  GDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLPV 61
          GDCRPLGFLLGLPFA ++L+LS+IG +IWI+G +LSC+CPCC+C   +  +A+GL+K P+
Sbjct: 4  GDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPI 63

Query: 62 KVLRWFTHQIPC 74
           V+ WF  +IPC
Sbjct: 64 HVMEWFMSKIPC 75

[Close]

BLAST of Lsi10G000760 vs. ExPASy TrEMBL
Match: A0A0A0LQ97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408940 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLS++GAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSLVGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. ExPASy TrEMBL
Match: A0A1S3C3C7 (uncharacterized protein LOC103496015 OS=Cucumis melo OX=3656 GN=LOC103496015 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLS++GAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSLVGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. ExPASy TrEMBL
Match: A0A6J1CHL1 (uncharacterized protein LOC111011246 OS=Momordica charantia OX=3673 GN=LOC111011246 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-31
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLSV+GAVIWIIGSVLSCLCPCC+C AG+AN+AVGLVKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCICCAGLANMAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. ExPASy TrEMBL
Match: A0A6J1I2I0 (uncharacterized protein LOC111469907 OS=Cucurbita maxima OX=3661 GN=LOC111469907 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.1e-31
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLSV+GAVIWIIGSVLSCLCPCCVC AG+ANLA+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. ExPASy TrEMBL
Match: A0A6J1G5K6 (uncharacterized protein LOC111451049 OS=Cucurbita moschata OX=3662 GN=LOC111451049 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.1e-31
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLSV+GAVIWIIGSVLSCLCPCCVC AG+ANLA+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. NCBI nr
Match: XP_038902116.1 (signaling peptide TAXIMIN 2 [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVLRWFTHQIPC
Sbjct: 61 IKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. NCBI nr
Match: XP_008455953.1 (PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo] >XP_031736938.1 signaling peptide TAXIMIN 2 [Cucumis sativus] >KGN63199.1 hypothetical protein Csa_022433 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-32
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLS++GAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSLVGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. NCBI nr
Match: XP_022140637.1 (uncharacterized protein LOC111011246 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 6.4e-31
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLSV+GAVIWIIGSVLSCLCPCC+C AG+AN+AVGLVKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCICCAGLANMAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. NCBI nr
Match: XP_022947063.1 (uncharacterized protein LOC111451049 [Cucurbita moschata] >XP_022971146.1 uncharacterized protein LOC111469907 [Cucurbita maxima] >XP_023533943.1 uncharacterized protein LOC111795637 [Cucurbita pepo subsp. pepo] >KAG6604889.1 Signaling peptide TAXIMIN 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026972.1 hypothetical protein SDJN02_10980 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 8.4e-31
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPFALVALVLSV+GAVIWIIGSVLSCLCPCCVC AG+ANLA+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. NCBI nr
Match: KAF3444070.1 (hypothetical protein FNV43_RR13760 [Rhamnella rubrinervis])

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFLLGLPF L+ALVLSV+GAV+WIIG+VLSCLCPCC+CFAGIAN+AV L+KLP
Sbjct: 1  MGDCRPLGFLLGLPFTLLALVLSVVGAVVWIIGTVLSCLCPCCICFAGIANMAVSLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKV++WFTHQIPC
Sbjct: 61 VKVMKWFTHQIPC 73

[Close]

BLAST of Lsi10G000760 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-31
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60
          MGDCRPLGFL+GLPFALVALVL+++GAVIWIIG+VLSCLCPCC CFA +AN AV L+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVLRWFTH IPC
Sbjct: 61 IKVLRWFTHSIPC 73

[Close]

BLAST of Lsi10G000760 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-23
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 2  GDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLPV 61
          GDCRPLGFLLGLPFA ++L+LS+IG +IWI+G +LSC+CPCC+C   +  +A+GL+K P+
Sbjct: 4  GDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPI 63

Query: 62 KVLRWFTHQIPC 74
           V+ WF  +IPC
Sbjct: 64 HVMEWFMSKIPC 75

The following BLAST results are available for this feature:

BLAST of Lsi10G000760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G309	1.9e-30	82.19	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]
O82275	2.5e-22	59.72	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]

BLAST of Lsi10G000760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ97	2.2e-32	97.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408940 PE=4 SV=1	[more]
A0A1S3C3C7	2.2e-32	97.26	uncharacterized protein LOC103496015 OS=Cucumis melo OX=3656 GN=LOC103496015 PE=...	[more]
A0A6J1CHL1	3.1e-31	93.15	uncharacterized protein LOC111011246 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1I2I0	4.1e-31	93.15	uncharacterized protein LOC111469907 OS=Cucurbita maxima OX=3661 GN=LOC111469907...	[more]
A0A6J1G5K6	4.1e-31	93.15	uncharacterized protein LOC111451049 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]

BLAST of Lsi10G000760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902116.1	2.0e-32	98.63	signaling peptide TAXIMIN 2 [Benincasa hispida]	[more]
XP_008455953.1	4.4e-32	97.26	PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo] >XP_031736938.1 s...	[more]
XP_022140637.1	6.4e-31	93.15	uncharacterized protein LOC111011246 [Momordica charantia]	[more]
XP_022947063.1	8.4e-31	93.15	uncharacterized protein LOC111451049 [Cucurbita moschata] >XP_022971146.1 unchar...	[more]
KAF3444070.1	2.1e-29	84.93	hypothetical protein FNV43_RR13760 [Rhamnella rubrinervis]	[more]

BLAST of Lsi10G000760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20562.1	1.4e-31	82.19	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT2G31090.1	1.8e-23	59.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF13	BNAA07G00400D PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G000760.1	Lsi10G000760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane