Lsi10G000710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G000710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	chr10: 1233691 .. 1234882 (+)
RNA-Seq Expression	Lsi10G000710
Synteny	Lsi10G000710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAGATATTGCGAAATCACCCCAACTGTTGTAGAAACCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAGCCAAGAAGCAAGAATCAGTTCTGGTTCATATTCTGTACCAAGAACAACCTTCAGAATCTATCATTTCTTCTGATAAACAATGGCTTCAATCGGTGCTAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTTCTCACATCGGTTCTCAAGCCAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAACAAGCCTCTCTCTCATCGAACTTTCAGGTGCGTTGCTTAATGCTTTTGCATCTACTTTAAGTGCGAGAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTTTTCCCTCTCCAAAAGGAGATCAACGAAAACTGTGGTCAATCTTCAACCTTATTTCTCTCATCAGTGTTTTAGTTGCGAAACGGCGCTCTAAAATTTTGAAATGACGACAAGATAGCCTTTCCCTTTCCCTTTCCCTTTCCCCTGCTTTAAAATAAAGAGTTTGGCGAAACGTTTCAGTAAATAACGTAATGTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAACTGATAATTTAATTCTTAACTTTCTTGATCTGTCATGAGCTAGTTCTAAAGAGGGAAGGACAATATTATGTATTTGTATAGTTTGGAATTTAGACCGTATCCATAATTTCAGAATGACTTCTTCTGTGGACAAGAAAGAGAGTTGATAATTTTCTGGAAGTTGATTTTCTATTCGCATTGGTTCTTCGTTGGATGAATTTCAGCTTTATAATTATTTTCATGAATCAAGAAAGAGAGTTGTAGTTCGAGTGGGGATAGTGATCAATTATATTTAGAAATAATGAAATCTGTATTTAGGTTTAGGGGTCACATTGGCCACGGTAATCAGATGTTTCTGGAGGATGAAATATCTACGCTAGTATTCTGTGATTAAAGTAGTTGATGTCTATGAATCATCAGAAGCTACACCATGAAAAGCTTTCTTTTGGGTTAATTTAAGTACTGATATGGAATAATATGCCAGTAACTTATAAC

mRNA sequence

TGAAAAGATATTGCGAAATCACCCCAACTGTTGTAGAAACCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAGCCAAGAAGCAAGAATCAGTTCTGGTTCATATTCTGTACCAAGAACAACCTTCAGAATCTATCATTTCTTCTGATAAACAATGGCTTCAATCGGTGCTAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTTCTCACATCGGTTCTCAAGCCAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAACAAGCCTCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAACTGATAATTTAATTCTTAACTTTCTTGATCTGTCATGAGCTAGTTCTAAAGAGGGAAGGACAATATTATGTATTTGTATAGTTTGGAATTTAGACCGTATCCATAATTTCAGAATGACTTCTTCTGTGGACAAGAAAGAGAGTTGATAATTTTCTGGAAGTTGATTTTCTATTCGCATTGGTTCTTCGTTGGATGAATTTCAGCTTTATAATTATTTTCATGAATCAAGAAAGAGAGTTGTAGTTCGAGTGGGGATAGTGATCAATTATATTTAGAAATAATGAAATCTGTATTTAGGTTTAGGGGTCACATTGGCCACGGTAATCAGATGTTTCTGGAGGATGAAATATCTACGCTAGTATTCTGTGATTAAAGTAGTTGATGTCTATGAATCATCAGAAGCTACACCATGAAAAGCTTTCTTTTGGGTTAATTTAAGTACTGATATGGAATAATATGCCAGTAACTTATAAC

Coding sequence (CDS)

ATGGCTTCAATCGGTGCTAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTTCTCACATCGGTTCTCAAGCCAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAACAAGCCTCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

Protein sequence

MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSASSSALMTSMLSISRHSCGWLPEGA

Homology

[Close]

BLAST of Lsi10G000710 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-08
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 5  GARSVFRSFSGSARRAASHIGSQAKPSSSSP--FRMATNKPLSHRTFRCAPEMSFCLESM 64
          GARS+ R  + S+R AA+  G  A  + S+P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSISRHSCGWLPE 91
          +P+HSA++SALMTS LSIS  + GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Lsi10G000710 vs. ExPASy TrEMBL
Match: A0A0A0LT36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.7e-39
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ KPS SSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSISRHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Lsi10G000710 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ K SSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSISRHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Lsi10G000710 vs. ExPASy TrEMBL
Match: A0A0A0LMP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ K SSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPE 91
          SMMPFHS SSSALMTSMLSISRHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]

BLAST of Lsi10G000710 vs. ExPASy TrEMBL
Match: A0A5D3BHH0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00120 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ KPSS+SPFRMATNKPLSH TFRCAP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Lsi10G000710 vs. ExPASy TrEMBL
Match: A0A1S4E0Y3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ KPSS+SPFRMATNKPLSH TFRCAP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Lsi10G000710 vs. NCBI nr
Match: KGN63196.1 (hypothetical protein Csa_022217 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ KPS SSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSISRHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Lsi10G000710 vs. NCBI nr
Match: KAE8652269.1 (hypothetical protein Csa_021983 [Cucumis sativus] >KGN63193.1 hypothetical protein Csa_022010 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ K SSSSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSISRHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Lsi10G000710 vs. NCBI nr
Match: XP_038901103.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQA+PSS+SPFRMATNKPLSHRTFRCAP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAATHIGSQARPSSTSPFRMATNKPLSHRTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHSASSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Lsi10G000710 vs. NCBI nr
Match: XP_038901106.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQA+PSS+SPFRMATNKPLSHRTFRCAP MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAATHIGSQARPSSTSPFRMATNKPLSHRTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHSASSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Lsi10G000710 vs. NCBI nr
Match: XP_011649972.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAA+HIGSQ KPS SSPFRMATNKPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Lsi10G000710 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAASHIGSQAKPSSSS---PFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARSVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRHSCGWLPEG 92
          +P+H+A++SAL+ SMLS+SR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Lsi10G000710 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAASHIGSQAKPSSSS---PFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARSVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRHSCGWLPEG 92
          +P+H+A++SAL+ SMLS+SR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Lsi10G000710 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAASHIGSQAKPSSSS---PFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARSVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRHSCGWLPEG 92
          +P+H+A++SAL+ SMLS+SR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Lsi10G000710 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAASHIGSQAKPSSSS---PFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARSVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRHSCGWL 89
          +P+H+A++SAL+ SMLS+SR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]

BLAST of Lsi10G000710 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 6  ARSVFRSFSGSARRAASHIGSQAKPSSSS---PFRMATNKPLSHRTFRCAPEMSFCLESM 65
          ARSVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSISRHSCGWL 89
          +P+H+A++SAL+ SMLS+SR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:

BLAST of Lsi10G000710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	4.5e-08	44.32	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Lsi10G000710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT36	8.7e-39	94.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1	[more]
A0A0A0LN06	1.9e-38	94.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1	[more]
A0A0A0LMP1	2.8e-37	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1	[more]
A0A5D3BHH0	6.2e-37	92.31	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E0Y3	6.2e-37	92.31	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of Lsi10G000710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63196.1	1.8e-38	94.57	hypothetical protein Csa_022217 [Cucumis sativus]	[more]
KAE8652269.1	4.0e-38	94.57	hypothetical protein Csa_021983 [Cucumis sativus] >KGN63193.1 hypothetical prote...	[more]
XP_038901103.1	4.0e-38	94.51	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his...	[more]
XP_038901106.1	4.0e-38	94.51	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa his...	[more]
XP_011649972.1	5.2e-38	94.51	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucu...	[more]

BLAST of Lsi10G000710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28395.2	5.3e-12	46.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	5.3e-12	46.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	5.3e-12	46.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.4	3.4e-11	46.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.5	3.4e-11	46.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G000710.1	Lsi10G000710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy