Lsi10G000470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G000470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFGE-sulfatase domain-containing protein
Locationchr10: 730958 .. 731767 (-)
RNA-Seq ExpressionLsi10G000470
SyntenyLsi10G000470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTATTCTGCAATAGCCTACTAGTTTTCATTTGTCTAAATTATCGCTCGAGTGTTTCACCGGAGAAAGATCGTTGCCAGGAACTGGCTGGAAAGAGACACACTGCATGGTGTTGTGAGAGTCGACTATGGGATAGAAGGAGAACTGTTGGTGAAGTTCGTGAAACTCTATCCGTTGTTGTTGAAGAGACTTATGGTGATGATTATTGTGATTTAGTTACAGGAGATGATAAAACTCTATTTGTTATTGTTGAAGTAACTCGAGCTGATGAATTGGATGCGGTGGAGGATGGTAAGACTCTCTCAGTCATTGAAGAAACTAAAGGTGATGAATTAGAAATGGTGGAGGATGATAAGACTCTCTCAGTCATTGAAGAAACTCAAGATGAAGATTTCGAAGTGGAGGATGCTAAGACTCTCAGAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTGGTGGAGGATGATACAACTCTCTTAGTTATTGAAGAAATTCAAGATGAAGAATTCAAAGTGGTGGAGGATGCTAAGACTCTCAGAGTCATTGAGGAACTTCAAGATGAAGAATTCGAAGTGGTGGAGAATGATACGACTCTCTCAGCCATTGAAGAAACTCAAGATGATGAATTAGAAACAGTGGAGGGTGATAGGACTCTCTCAGTCGTTGAAGAAATCCATAATGATGATGAACAAGAACAAGGAAGCAGCGTTGATACCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCATAAGAAGAATGAAAAAGGACATAAGGATTGAAATTCTAACAATATAA

mRNA sequence

ATGTTTTTATTCTGCAATAGCCTACTAGTTTTCATTTGTCTAAATTATCGCTCGAGTGTTTCACCGGAGAAAGATCGTTGCCAGGAACTGGCTGGAAAGAGACACACTGCATGGTGTTGTGAGAGTCGACTATGGGATAGAAGGAGAACTGTTGGTGAAGTTCGTGAAACTCTATCCGTTGTTGTTGAAGAGACTTATGGTGATGATTATTGTGATTTAGTTACAGGAGATGATAAAACTCTATTTGTTATTGTTGAAGTAACTCGAGCTGATGAATTGGATGCGGTGGAGGATGGTAAGACTCTCTCAGTCATTGAAGAAACTAAAGGTGATGAATTAGAAATGGTGGAGGATGATAAGACTCTCTCAGTCATTGAAGAAACTCAAGATGAAGATTTCGAAGTGGAGGATGCTAAGACTCTCAGAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTGGTGGAGGATGATACAACTCTCTTAGTTATTGAAGAAATTCAAGATGAAGAATTCAAAGTGGTGGAGGATGCTAAGACTCTCAGAGTCATTGAGGAACTTCAAGATGAAGAATTCGAAGTGGTGGAGAATGATACGACTCTCTCAGCCATTGAAGAAACTCAAGATGATGAATTAGAAACAGTGGAGGGTGATAGGACTCTCTCAGTCGTTGAAGAAATCCATAATGATGATGAACAAGAACAAGGAAGCAGCGTTGATACCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCATAAGAAGAATGAAAAAGGACATAAGGATTGAAATTCTAACAATATAA

Coding sequence (CDS)

ATGTTTTTATTCTGCAATAGCCTACTAGTTTTCATTTGTCTAAATTATCGCTCGAGTGTTTCACCGGAGAAAGATCGTTGCCAGGAACTGGCTGGAAAGAGACACACTGCATGGTGTTGTGAGAGTCGACTATGGGATAGAAGGAGAACTGTTGGTGAAGTTCGTGAAACTCTATCCGTTGTTGTTGAAGAGACTTATGGTGATGATTATTGTGATTTAGTTACAGGAGATGATAAAACTCTATTTGTTATTGTTGAAGTAACTCGAGCTGATGAATTGGATGCGGTGGAGGATGGTAAGACTCTCTCAGTCATTGAAGAAACTAAAGGTGATGAATTAGAAATGGTGGAGGATGATAAGACTCTCTCAGTCATTGAAGAAACTCAAGATGAAGATTTCGAAGTGGAGGATGCTAAGACTCTCAGAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTGGTGGAGGATGATACAACTCTCTTAGTTATTGAAGAAATTCAAGATGAAGAATTCAAAGTGGTGGAGGATGCTAAGACTCTCAGAGTCATTGAGGAACTTCAAGATGAAGAATTCGAAGTGGTGGAGAATGATACGACTCTCTCAGCCATTGAAGAAACTCAAGATGATGAATTAGAAACAGTGGAGGGTGATAGGACTCTCTCAGTCGTTGAAGAAATCCATAATGATGATGAACAAGAACAAGGAAGCAGCGTTGATACCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCATAAGAAGAATGAAAAAGGACATAAGGATTGAAATTCTAACAATATAA

Protein sequence

MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEVRETLSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVEDDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGSSVDTISLEELNRKCEEFIRRMKKDIRIEILTI
Homology
BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match: A0A6J1CFL5 (uncharacterized protein LOC111011235 OS=Momordica charantia OX=3673 GN=LOC111011235 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 114/273 (41.76%), Postives = 148/273 (54.21%), Query Frame = 0

Query: 1   MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEV---RET 60
           MFL CNSLLVFICLN  S+V+                        D  RTVGEV   +ET
Sbjct: 39  MFLLCNSLLVFICLNSPSTVNS----------------------LDGSRTVGEVGDEKET 98

Query: 61  LSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVE 120
            S+ V   + D        D+K                   G+TL  +EET+ DELE+ E
Sbjct: 99  GSLHVVRVFEDQILIAEDNDEKA------------------GETL-FVEETRDDELEVRE 158

Query: 121 DDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVED 180
           DD TL VIEE  D++ E +D +TL V+EE+ DD                  ++E    + 
Sbjct: 159 DDMTLFVIEEIHDDELEAKDDRTLSVVEEIHDD-----------------NEQEQGGGDV 218

Query: 181 AKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDD-EQEQG 240
              L ++EE +D+E EVVE+D TL  +EETQDDELE  + D+TLSVV+E H+D+ EQEQG
Sbjct: 219 DMILSIVEETRDDELEVVEDDMTLFDVEETQDDELEAAD-DKTLSVVKETHDDEQEQEQG 252

Query: 241 SSVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
              D ISLEELN+K +EFIR  +  IR E+LTI
Sbjct: 279 GGNDMISLEELNKKFDEFIRTTRMKIRAELLTI 252

BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match: A0A0A0KCP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111940 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 95/194 (48.97%), Postives = 108/194 (55.67%), Query Frame = 0

Query: 76  GDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVEDDKTLSVIEETQDEDFEV 135
           GDDKTL   VEVT+A++LDA E+  TLSVI+ETKGDELE+V+DD+TLSVIEETQD D + 
Sbjct: 13  GDDKTLHDNVEVTQANQLDAPEEDMTLSVIKETKGDELELVKDDRTLSVIEETQDYDSD- 72

Query: 136 EDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVEDAKTLRVIEELQDEEFEVV 195
                                                 VVEDAK                
Sbjct: 73  --------------------------------------VVEDAK---------------- 132

Query: 196 ENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGSSVDTISLEELNRKCEEFI 255
                             TV+GD+TLSVVEE  NDDEQ+QG SVD ISLEELNRKCEEFI
Sbjct: 133 ------------------TVKGDKTLSVVEETCNDDEQKQGGSVDAISLEELNRKCEEFI 133

Query: 256 RRMKKDIRIEILTI 270
           RRMK DI+IEILTI
Sbjct: 193 RRMKNDIQIEILTI 133

BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match: A0A1W1HCG9 (FGE-sulfatase domain-containing protein OS=Desulfamplus magnetovallimortis OX=1246637 GN=MTBBW1_2130028 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.5e-11
Identity = 72/212 (33.96%), Postives = 120/212 (56.60%), Query Frame = 0

Query: 56  ETLSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEM 115
           E L   +EE   +D  D+   +D+ L   +E    +++  VED + L  IEE + +++  
Sbjct: 369 EELQDDIEEVEDEDVIDV---EDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEAEDIID 428

Query: 116 VEDDKTLSVIEETQDED-FEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKV 175
           VE+++ L  IEE +DED  +VED +    IEE++DD+   VED+  L  IEE+++++   
Sbjct: 429 VEEEELLDDIEEVEDEDIIDVEDEELQDDIEEVEDDDIIDVEDEELLDDIEEVEEDDIID 488

Query: 176 VEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQE 235
           VED + L  IEE++DE+   VE++  L  IEE +D+++  VE +  L  +EE+  DD  E
Sbjct: 489 VEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVDEDDIIE 548

Query: 236 QGSSVDTISLEELNRKCEEFIRRMKKDIRIEI 267
                +   +EE++   EE I  +  D  +EI
Sbjct: 549 VEDDEELAEIEEVD---EEDIVEVDDDDLLEI 574

BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match: A0A4V6IM22 (C-type lectin fold OS=Desulfoluna butyratoxydans OX=231438 GN=MSL71_48640 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 68/211 (32.23%), Postives = 113/211 (53.55%), Query Frame = 0

Query: 53  EVRETLSVVVEETYGDDYCDL-VTGDDKTLFVI-------VEVTRADELDAVEDGKTLSV 112
           EV E L   +EE    D  ++ +  DD+ L  I       +E  + +ELD ++D   L  
Sbjct: 243 EVEEILDDELEEVDESDDEEIDILDDDEALEEIPEGELEEIEDDQDEELDILDDDDAL-- 302

Query: 113 IEETKGDELEMVEDDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVI 172
            EE   D++E V++D  L  I + + E+ + +DA     +EE+ DDE + +++D  L   
Sbjct: 303 -EEISDDDIEEVDEDDALEEISDDEIEEIDEDDA-----LEEISDDEIEEIDEDDAL--- 362

Query: 173 EEIQDEEFKVVEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVV 232
           EEI D+E + V++   L   EE+ D+E E V+ D    A+EE  DD++E V+ D  L   
Sbjct: 363 EEISDDEIEEVDEDDAL---EEISDDEIEEVDED---DALEEISDDDIEEVDEDDPL--- 422

Query: 233 EEIHNDD--EQEQGSSVDTISLEELNRKCEE 254
           EEI +DD  E ++  +++ IS +E+    E+
Sbjct: 423 EEISDDDIEEIDEDDALEEISDDEVEEVDED 433

BLAST of Lsi10G000470 vs. NCBI nr
Match: XP_038902155.1 (uncharacterized protein LOC120088789 [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 8.3e-68
Identity = 173/272 (63.60%), Postives = 184/272 (67.65%), Query Frame = 0

Query: 1   MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEVRETLSV 60
           MFLFCNSLLVFICLN R SVS EKDR QELA KR  A CCESRL DRRRTVG+V ETLSV
Sbjct: 40  MFLFCNSLLVFICLNSRLSVSLEKDRRQELAEKRQAAGCCESRLLDRRRTVGDVGETLSV 99

Query: 61  VVEETYGDDYC-DLVTGDDKTLFVIVEVTRADELDAVEDGKTLS-VIEETKGDELE-MVE 120
           VVEETYGDDY  DL  GDD+TL V VEVT  DELDAVED +TLS VIEETKGDELE +VE
Sbjct: 100 VVEETYGDDYYGDLAAGDDETLLVKVEVTPTDELDAVEDDRTLSVVIEETKGDELETVVE 159

Query: 121 DDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVED 180
           D+KTLSVIEETQDEDFE                                       VVED
Sbjct: 160 DNKTLSVIEETQDEDFE---------------------------------------VVED 219

Query: 181 AKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGS 240
           AKTLR+IEE +D                     EL  VEGD+TLS+ EE  ND+EQEQG 
Sbjct: 220 AKTLRIIEEFRDH--------------------ELGIVEGDKTLSIFEETRNDEEQEQGG 252

Query: 241 SVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
           SVD+ISLEELNRKCEEFIRRMKKDIRIEILTI
Sbjct: 280 SVDSISLEELNRKCEEFIRRMKKDIRIEILTI 252

BLAST of Lsi10G000470 vs. NCBI nr
Match: XP_022140625.1 (uncharacterized protein LOC111011235 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-28
Identity = 114/273 (41.76%), Postives = 148/273 (54.21%), Query Frame = 0

Query: 1   MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEV---RET 60
           MFL CNSLLVFICLN  S+V+                        D  RTVGEV   +ET
Sbjct: 39  MFLLCNSLLVFICLNSPSTVNS----------------------LDGSRTVGEVGDEKET 98

Query: 61  LSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVE 120
            S+ V   + D        D+K                   G+TL  +EET+ DELE+ E
Sbjct: 99  GSLHVVRVFEDQILIAEDNDEKA------------------GETL-FVEETRDDELEVRE 158

Query: 121 DDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVED 180
           DD TL VIEE  D++ E +D +TL V+EE+ DD                  ++E    + 
Sbjct: 159 DDMTLFVIEEIHDDELEAKDDRTLSVVEEIHDD-----------------NEQEQGGGDV 218

Query: 181 AKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDD-EQEQG 240
              L ++EE +D+E EVVE+D TL  +EETQDDELE  + D+TLSVV+E H+D+ EQEQG
Sbjct: 219 DMILSIVEETRDDELEVVEDDMTLFDVEETQDDELEAAD-DKTLSVVKETHDDEQEQEQG 252

Query: 241 SSVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
              D ISLEELN+K +EFIR  +  IR E+LTI
Sbjct: 279 GGNDMISLEELNKKFDEFIRTTRMKIRAELLTI 252

BLAST of Lsi10G000470 vs. NCBI nr
Match: KGN46604.1 (hypothetical protein Csa_005627 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-26
Identity = 95/194 (48.97%), Postives = 108/194 (55.67%), Query Frame = 0

Query: 76  GDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVEDDKTLSVIEETQDEDFEV 135
           GDDKTL   VEVT+A++LDA E+  TLSVI+ETKGDELE+V+DD+TLSVIEETQD D + 
Sbjct: 13  GDDKTLHDNVEVTQANQLDAPEEDMTLSVIKETKGDELELVKDDRTLSVIEETQDYDSD- 72

Query: 136 EDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVEDAKTLRVIEELQDEEFEVV 195
                                                 VVEDAK                
Sbjct: 73  --------------------------------------VVEDAK---------------- 132

Query: 196 ENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGSSVDTISLEELNRKCEEFI 255
                             TV+GD+TLSVVEE  NDDEQ+QG SVD ISLEELNRKCEEFI
Sbjct: 133 ------------------TVKGDKTLSVVEETCNDDEQKQGGSVDAISLEELNRKCEEFI 133

Query: 256 RRMKKDIRIEILTI 270
           RRMK DI+IEILTI
Sbjct: 193 RRMKNDIQIEILTI 133

BLAST of Lsi10G000470 vs. NCBI nr
Match: WP_080807661.1 (SUMF1/EgtB/PvdO family nonheme iron enzyme [Desulfamplus magnetovallimortis] >SLM30133.1 conserved hypothetical protein [Desulfamplus magnetovallimortis])

HSP 1 Score: 78.6 bits (192), Expect = 9.3e-11
Identity = 72/212 (33.96%), Postives = 120/212 (56.60%), Query Frame = 0

Query: 56  ETLSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEM 115
           E L   +EE   +D  D+   +D+ L   +E    +++  VED + L  IEE + +++  
Sbjct: 369 EELQDDIEEVEDEDVIDV---EDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEAEDIID 428

Query: 116 VEDDKTLSVIEETQDED-FEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKV 175
           VE+++ L  IEE +DED  +VED +    IEE++DD+   VED+  L  IEE+++++   
Sbjct: 429 VEEEELLDDIEEVEDEDIIDVEDEELQDDIEEVEDDDIIDVEDEELLDDIEEVEEDDIID 488

Query: 176 VEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQE 235
           VED + L  IEE++DE+   VE++  L  IEE +D+++  VE +  L  +EE+  DD  E
Sbjct: 489 VEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVDEDDIIE 548

Query: 236 QGSSVDTISLEELNRKCEEFIRRMKKDIRIEI 267
                +   +EE++   EE I  +  D  +EI
Sbjct: 549 VEDDEELAEIEEVD---EEDIVEVDDDDLLEI 574

BLAST of Lsi10G000470 vs. NCBI nr
Match: XP_023512249.1 (uncharacterized protein LOC111777037 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-08
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0

Query: 175 VEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQE 234
           V+      V++E +D E E+        A+EE  +DELE ++ D       E  ++ EQE
Sbjct: 80  VQQVSRRLVLQETRDHELEMCS-----FALEEAHNDELEGMKDD-------ECEHEQEQE 139

Query: 235 QGSSVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
           QG  VDTI LEELNRKCEEFIRRMK+DIR++ILT+
Sbjct: 140 QGHRVDTIGLEELNRKCEEFIRRMKEDIRVQILTL 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CFL51.8e-2841.76uncharacterized protein LOC111011235 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0KCP47.7e-2748.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111940 PE=4 SV=1[more]
A0A1W1HCG94.5e-1133.96FGE-sulfatase domain-containing protein OS=Desulfamplus magnetovallimortis OX=12... [more]
A0A4V6IM221.4e-0432.23C-type lectin fold OS=Desulfoluna butyratoxydans OX=231438 GN=MSL71_48640 PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_038902155.18.3e-6863.60uncharacterized protein LOC120088789 [Benincasa hispida][more]
XP_022140625.13.8e-2841.76uncharacterized protein LOC111011235 [Momordica charantia][more]
KGN46604.11.6e-2648.97hypothetical protein Csa_005627 [Cucumis sativus][more]
WP_080807661.19.3e-1133.96SUMF1/EgtB/PvdO family nonheme iron enzyme [Desulfamplus magnetovallimortis] >SL... [more]
XP_023512249.13.3e-0848.42uncharacterized protein LOC111777037 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34947TRANSMEMBRANE PROTEINcoord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G000470.1Lsi10G000470.1mRNA