Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTATTCTGCAATAGCCTACTAGTTTTCATTTGTCTAAATTATCGCTCGAGTGTTTCACCGGAGAAAGATCGTTGCCAGGAACTGGCTGGAAAGAGACACACTGCATGGTGTTGTGAGAGTCGACTATGGGATAGAAGGAGAACTGTTGGTGAAGTTCGTGAAACTCTATCCGTTGTTGTTGAAGAGACTTATGGTGATGATTATTGTGATTTAGTTACAGGAGATGATAAAACTCTATTTGTTATTGTTGAAGTAACTCGAGCTGATGAATTGGATGCGGTGGAGGATGGTAAGACTCTCTCAGTCATTGAAGAAACTAAAGGTGATGAATTAGAAATGGTGGAGGATGATAAGACTCTCTCAGTCATTGAAGAAACTCAAGATGAAGATTTCGAAGTGGAGGATGCTAAGACTCTCAGAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTGGTGGAGGATGATACAACTCTCTTAGTTATTGAAGAAATTCAAGATGAAGAATTCAAAGTGGTGGAGGATGCTAAGACTCTCAGAGTCATTGAGGAACTTCAAGATGAAGAATTCGAAGTGGTGGAGAATGATACGACTCTCTCAGCCATTGAAGAAACTCAAGATGATGAATTAGAAACAGTGGAGGGTGATAGGACTCTCTCAGTCGTTGAAGAAATCCATAATGATGATGAACAAGAACAAGGAAGCAGCGTTGATACCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCATAAGAAGAATGAAAAAGGACATAAGGATTGAAATTCTAACAATATAA
mRNA sequence
ATGTTTTTATTCTGCAATAGCCTACTAGTTTTCATTTGTCTAAATTATCGCTCGAGTGTTTCACCGGAGAAAGATCGTTGCCAGGAACTGGCTGGAAAGAGACACACTGCATGGTGTTGTGAGAGTCGACTATGGGATAGAAGGAGAACTGTTGGTGAAGTTCGTGAAACTCTATCCGTTGTTGTTGAAGAGACTTATGGTGATGATTATTGTGATTTAGTTACAGGAGATGATAAAACTCTATTTGTTATTGTTGAAGTAACTCGAGCTGATGAATTGGATGCGGTGGAGGATGGTAAGACTCTCTCAGTCATTGAAGAAACTAAAGGTGATGAATTAGAAATGGTGGAGGATGATAAGACTCTCTCAGTCATTGAAGAAACTCAAGATGAAGATTTCGAAGTGGAGGATGCTAAGACTCTCAGAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTGGTGGAGGATGATACAACTCTCTTAGTTATTGAAGAAATTCAAGATGAAGAATTCAAAGTGGTGGAGGATGCTAAGACTCTCAGAGTCATTGAGGAACTTCAAGATGAAGAATTCGAAGTGGTGGAGAATGATACGACTCTCTCAGCCATTGAAGAAACTCAAGATGATGAATTAGAAACAGTGGAGGGTGATAGGACTCTCTCAGTCGTTGAAGAAATCCATAATGATGATGAACAAGAACAAGGAAGCAGCGTTGATACCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCATAAGAAGAATGAAAAAGGACATAAGGATTGAAATTCTAACAATATAA
Coding sequence (CDS)
ATGTTTTTATTCTGCAATAGCCTACTAGTTTTCATTTGTCTAAATTATCGCTCGAGTGTTTCACCGGAGAAAGATCGTTGCCAGGAACTGGCTGGAAAGAGACACACTGCATGGTGTTGTGAGAGTCGACTATGGGATAGAAGGAGAACTGTTGGTGAAGTTCGTGAAACTCTATCCGTTGTTGTTGAAGAGACTTATGGTGATGATTATTGTGATTTAGTTACAGGAGATGATAAAACTCTATTTGTTATTGTTGAAGTAACTCGAGCTGATGAATTGGATGCGGTGGAGGATGGTAAGACTCTCTCAGTCATTGAAGAAACTAAAGGTGATGAATTAGAAATGGTGGAGGATGATAAGACTCTCTCAGTCATTGAAGAAACTCAAGATGAAGATTTCGAAGTGGAGGATGCTAAGACTCTCAGAGTCATTGAAGAACTTCAAGATGATGAATTCAAAGTGGTGGAGGATGATACAACTCTCTTAGTTATTGAAGAAATTCAAGATGAAGAATTCAAAGTGGTGGAGGATGCTAAGACTCTCAGAGTCATTGAGGAACTTCAAGATGAAGAATTCGAAGTGGTGGAGAATGATACGACTCTCTCAGCCATTGAAGAAACTCAAGATGATGAATTAGAAACAGTGGAGGGTGATAGGACTCTCTCAGTCGTTGAAGAAATCCATAATGATGATGAACAAGAACAAGGAAGCAGCGTTGATACCATCAGCTTAGAGGAGTTGAACAGAAAGTGCGAGGAGTTCATAAGAAGAATGAAAAAGGACATAAGGATTGAAATTCTAACAATATAA
Protein sequence
MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEVRETLSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVEDDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGSSVDTISLEELNRKCEEFIRRMKKDIRIEILTI
Homology
BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match:
A0A6J1CFL5 (uncharacterized protein LOC111011235 OS=Momordica charantia OX=3673 GN=LOC111011235 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 114/273 (41.76%), Postives = 148/273 (54.21%), Query Frame = 0
Query: 1 MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEV---RET 60
MFL CNSLLVFICLN S+V+ D RTVGEV +ET
Sbjct: 39 MFLLCNSLLVFICLNSPSTVNS----------------------LDGSRTVGEVGDEKET 98
Query: 61 LSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVE 120
S+ V + D D+K G+TL +EET+ DELE+ E
Sbjct: 99 GSLHVVRVFEDQILIAEDNDEKA------------------GETL-FVEETRDDELEVRE 158
Query: 121 DDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVED 180
DD TL VIEE D++ E +D +TL V+EE+ DD ++E +
Sbjct: 159 DDMTLFVIEEIHDDELEAKDDRTLSVVEEIHDD-----------------NEQEQGGGDV 218
Query: 181 AKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDD-EQEQG 240
L ++EE +D+E EVVE+D TL +EETQDDELE + D+TLSVV+E H+D+ EQEQG
Sbjct: 219 DMILSIVEETRDDELEVVEDDMTLFDVEETQDDELEAAD-DKTLSVVKETHDDEQEQEQG 252
Query: 241 SSVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
D ISLEELN+K +EFIR + IR E+LTI
Sbjct: 279 GGNDMISLEELNKKFDEFIRTTRMKIRAELLTI 252
BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match:
A0A0A0KCP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111940 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 95/194 (48.97%), Postives = 108/194 (55.67%), Query Frame = 0
Query: 76 GDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVEDDKTLSVIEETQDEDFEV 135
GDDKTL VEVT+A++LDA E+ TLSVI+ETKGDELE+V+DD+TLSVIEETQD D +
Sbjct: 13 GDDKTLHDNVEVTQANQLDAPEEDMTLSVIKETKGDELELVKDDRTLSVIEETQDYDSD- 72
Query: 136 EDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVEDAKTLRVIEELQDEEFEVV 195
VVEDAK
Sbjct: 73 --------------------------------------VVEDAK---------------- 132
Query: 196 ENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGSSVDTISLEELNRKCEEFI 255
TV+GD+TLSVVEE NDDEQ+QG SVD ISLEELNRKCEEFI
Sbjct: 133 ------------------TVKGDKTLSVVEETCNDDEQKQGGSVDAISLEELNRKCEEFI 133
Query: 256 RRMKKDIRIEILTI 270
RRMK DI+IEILTI
Sbjct: 193 RRMKNDIQIEILTI 133
BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match:
A0A1W1HCG9 (FGE-sulfatase domain-containing protein OS=Desulfamplus magnetovallimortis OX=1246637 GN=MTBBW1_2130028 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 4.5e-11
Identity = 72/212 (33.96%), Postives = 120/212 (56.60%), Query Frame = 0
Query: 56 ETLSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEM 115
E L +EE +D D+ +D+ L +E +++ VED + L IEE + +++
Sbjct: 369 EELQDDIEEVEDEDVIDV---EDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEAEDIID 428
Query: 116 VEDDKTLSVIEETQDED-FEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKV 175
VE+++ L IEE +DED +VED + IEE++DD+ VED+ L IEE+++++
Sbjct: 429 VEEEELLDDIEEVEDEDIIDVEDEELQDDIEEVEDDDIIDVEDEELLDDIEEVEEDDIID 488
Query: 176 VEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQE 235
VED + L IEE++DE+ VE++ L IEE +D+++ VE + L +EE+ DD E
Sbjct: 489 VEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVDEDDIIE 548
Query: 236 QGSSVDTISLEELNRKCEEFIRRMKKDIRIEI 267
+ +EE++ EE I + D +EI
Sbjct: 549 VEDDEELAEIEEVD---EEDIVEVDDDDLLEI 574
BLAST of Lsi10G000470 vs. ExPASy TrEMBL
Match:
A0A4V6IM22 (C-type lectin fold OS=Desulfoluna butyratoxydans OX=231438 GN=MSL71_48640 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 68/211 (32.23%), Postives = 113/211 (53.55%), Query Frame = 0
Query: 53 EVRETLSVVVEETYGDDYCDL-VTGDDKTLFVI-------VEVTRADELDAVEDGKTLSV 112
EV E L +EE D ++ + DD+ L I +E + +ELD ++D L
Sbjct: 243 EVEEILDDELEEVDESDDEEIDILDDDEALEEIPEGELEEIEDDQDEELDILDDDDAL-- 302
Query: 113 IEETKGDELEMVEDDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVI 172
EE D++E V++D L I + + E+ + +DA +EE+ DDE + +++D L
Sbjct: 303 -EEISDDDIEEVDEDDALEEISDDEIEEIDEDDA-----LEEISDDEIEEIDEDDAL--- 362
Query: 173 EEIQDEEFKVVEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVV 232
EEI D+E + V++ L EE+ D+E E V+ D A+EE DD++E V+ D L
Sbjct: 363 EEISDDEIEEVDEDDAL---EEISDDEIEEVDED---DALEEISDDDIEEVDEDDPL--- 422
Query: 233 EEIHNDD--EQEQGSSVDTISLEELNRKCEE 254
EEI +DD E ++ +++ IS +E+ E+
Sbjct: 423 EEISDDDIEEIDEDDALEEISDDEVEEVDED 433
BLAST of Lsi10G000470 vs. NCBI nr
Match:
XP_038902155.1 (uncharacterized protein LOC120088789 [Benincasa hispida])
HSP 1 Score: 268.1 bits (684), Expect = 8.3e-68
Identity = 173/272 (63.60%), Postives = 184/272 (67.65%), Query Frame = 0
Query: 1 MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEVRETLSV 60
MFLFCNSLLVFICLN R SVS EKDR QELA KR A CCESRL DRRRTVG+V ETLSV
Sbjct: 40 MFLFCNSLLVFICLNSRLSVSLEKDRRQELAEKRQAAGCCESRLLDRRRTVGDVGETLSV 99
Query: 61 VVEETYGDDYC-DLVTGDDKTLFVIVEVTRADELDAVEDGKTLS-VIEETKGDELE-MVE 120
VVEETYGDDY DL GDD+TL V VEVT DELDAVED +TLS VIEETKGDELE +VE
Sbjct: 100 VVEETYGDDYYGDLAAGDDETLLVKVEVTPTDELDAVEDDRTLSVVIEETKGDELETVVE 159
Query: 121 DDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVED 180
D+KTLSVIEETQDEDFE VVED
Sbjct: 160 DNKTLSVIEETQDEDFE---------------------------------------VVED 219
Query: 181 AKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGS 240
AKTLR+IEE +D EL VEGD+TLS+ EE ND+EQEQG
Sbjct: 220 AKTLRIIEEFRDH--------------------ELGIVEGDKTLSIFEETRNDEEQEQGG 252
Query: 241 SVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
SVD+ISLEELNRKCEEFIRRMKKDIRIEILTI
Sbjct: 280 SVDSISLEELNRKCEEFIRRMKKDIRIEILTI 252
BLAST of Lsi10G000470 vs. NCBI nr
Match:
XP_022140625.1 (uncharacterized protein LOC111011235 [Momordica charantia])
HSP 1 Score: 136.3 bits (342), Expect = 3.8e-28
Identity = 114/273 (41.76%), Postives = 148/273 (54.21%), Query Frame = 0
Query: 1 MFLFCNSLLVFICLNYRSSVSPEKDRCQELAGKRHTAWCCESRLWDRRRTVGEV---RET 60
MFL CNSLLVFICLN S+V+ D RTVGEV +ET
Sbjct: 39 MFLLCNSLLVFICLNSPSTVNS----------------------LDGSRTVGEVGDEKET 98
Query: 61 LSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVE 120
S+ V + D D+K G+TL +EET+ DELE+ E
Sbjct: 99 GSLHVVRVFEDQILIAEDNDEKA------------------GETL-FVEETRDDELEVRE 158
Query: 121 DDKTLSVIEETQDEDFEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVED 180
DD TL VIEE D++ E +D +TL V+EE+ DD ++E +
Sbjct: 159 DDMTLFVIEEIHDDELEAKDDRTLSVVEEIHDD-----------------NEQEQGGGDV 218
Query: 181 AKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDD-EQEQG 240
L ++EE +D+E EVVE+D TL +EETQDDELE + D+TLSVV+E H+D+ EQEQG
Sbjct: 219 DMILSIVEETRDDELEVVEDDMTLFDVEETQDDELEAAD-DKTLSVVKETHDDEQEQEQG 252
Query: 241 SSVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
D ISLEELN+K +EFIR + IR E+LTI
Sbjct: 279 GGNDMISLEELNKKFDEFIRTTRMKIRAELLTI 252
BLAST of Lsi10G000470 vs. NCBI nr
Match:
KGN46604.1 (hypothetical protein Csa_005627 [Cucumis sativus])
HSP 1 Score: 131.0 bits (328), Expect = 1.6e-26
Identity = 95/194 (48.97%), Postives = 108/194 (55.67%), Query Frame = 0
Query: 76 GDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEMVEDDKTLSVIEETQDEDFEV 135
GDDKTL VEVT+A++LDA E+ TLSVI+ETKGDELE+V+DD+TLSVIEETQD D +
Sbjct: 13 GDDKTLHDNVEVTQANQLDAPEEDMTLSVIKETKGDELELVKDDRTLSVIEETQDYDSD- 72
Query: 136 EDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKVVEDAKTLRVIEELQDEEFEVV 195
VVEDAK
Sbjct: 73 --------------------------------------VVEDAK---------------- 132
Query: 196 ENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQEQGSSVDTISLEELNRKCEEFI 255
TV+GD+TLSVVEE NDDEQ+QG SVD ISLEELNRKCEEFI
Sbjct: 133 ------------------TVKGDKTLSVVEETCNDDEQKQGGSVDAISLEELNRKCEEFI 133
Query: 256 RRMKKDIRIEILTI 270
RRMK DI+IEILTI
Sbjct: 193 RRMKNDIQIEILTI 133
BLAST of Lsi10G000470 vs. NCBI nr
Match:
WP_080807661.1 (SUMF1/EgtB/PvdO family nonheme iron enzyme [Desulfamplus magnetovallimortis] >SLM30133.1 conserved hypothetical protein [Desulfamplus magnetovallimortis])
HSP 1 Score: 78.6 bits (192), Expect = 9.3e-11
Identity = 72/212 (33.96%), Postives = 120/212 (56.60%), Query Frame = 0
Query: 56 ETLSVVVEETYGDDYCDLVTGDDKTLFVIVEVTRADELDAVEDGKTLSVIEETKGDELEM 115
E L +EE +D D+ +D+ L +E +++ VED + L IEE + +++
Sbjct: 369 EELQDDIEEVEDEDVIDV---EDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEAEDIID 428
Query: 116 VEDDKTLSVIEETQDED-FEVEDAKTLRVIEELQDDEFKVVEDDTTLLVIEEIQDEEFKV 175
VE+++ L IEE +DED +VED + IEE++DD+ VED+ L IEE+++++
Sbjct: 429 VEEEELLDDIEEVEDEDIIDVEDEELQDDIEEVEDDDIIDVEDEELLDDIEEVEEDDIID 488
Query: 176 VEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQE 235
VED + L IEE++DE+ VE++ L IEE +D+++ VE + L +EE+ DD E
Sbjct: 489 VEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVEDEDIIDVEDEELLDDIEEVDEDDIIE 548
Query: 236 QGSSVDTISLEELNRKCEEFIRRMKKDIRIEI 267
+ +EE++ EE I + D +EI
Sbjct: 549 VEDDEELAEIEEVD---EEDIVEVDDDDLLEI 574
BLAST of Lsi10G000470 vs. NCBI nr
Match:
XP_023512249.1 (uncharacterized protein LOC111777037 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 70.1 bits (170), Expect = 3.3e-08
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0
Query: 175 VEDAKTLRVIEELQDEEFEVVENDTTLSAIEETQDDELETVEGDRTLSVVEEIHNDDEQE 234
V+ V++E +D E E+ A+EE +DELE ++ D E ++ EQE
Sbjct: 80 VQQVSRRLVLQETRDHELEMCS-----FALEEAHNDELEGMKDD-------ECEHEQEQE 139
Query: 235 QGSSVDTISLEELNRKCEEFIRRMKKDIRIEILTI 270
QG VDTI LEELNRKCEEFIRRMK+DIR++ILT+
Sbjct: 140 QGHRVDTIGLEELNRKCEEFIRRMKEDIRVQILTL 162
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CFL5 | 1.8e-28 | 41.76 | uncharacterized protein LOC111011235 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A0A0KCP4 | 7.7e-27 | 48.97 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111940 PE=4 SV=1 | [more] |
A0A1W1HCG9 | 4.5e-11 | 33.96 | FGE-sulfatase domain-containing protein OS=Desulfamplus magnetovallimortis OX=12... | [more] |
A0A4V6IM22 | 1.4e-04 | 32.23 | C-type lectin fold OS=Desulfoluna butyratoxydans OX=231438 GN=MSL71_48640 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
XP_038902155.1 | 8.3e-68 | 63.60 | uncharacterized protein LOC120088789 [Benincasa hispida] | [more] |
XP_022140625.1 | 3.8e-28 | 41.76 | uncharacterized protein LOC111011235 [Momordica charantia] | [more] |
KGN46604.1 | 1.6e-26 | 48.97 | hypothetical protein Csa_005627 [Cucumis sativus] | [more] |
WP_080807661.1 | 9.3e-11 | 33.96 | SUMF1/EgtB/PvdO family nonheme iron enzyme [Desulfamplus magnetovallimortis] >SL... | [more] |
XP_023512249.1 | 3.3e-08 | 48.42 | uncharacterized protein LOC111777037 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |