Lsi09G019220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G019220
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr09: 28069838 .. 28070327 (-)
RNA-Seq Expression	Lsi09G019220
Synteny	Lsi09G019220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTACTGGGCATGCCAGTTTTTAGGCCATGAAGAACAAGAGAGGGGAGAACTGAGGGTCAAAGTGACGAGACATGATTCTAGCTCGATGGACCCGTGAAGCTCTAGTCCTTTCTTCTAGAGAAGCGCTGGTGTTCGTCAACGATGAAAGCCGCTGAACTTCAGACTAGTTGAGAAAGAGGGCTAGGCCCAGGAGAGGAGGGCTTGATGGGACTAGGGAAGACGGGTAGATTATAGAGCTAGGGGCAGATCGGATCGAAGGTTTGTCCATTGGGATTGGGCATGGACGAGCCTCGACTGGGCCAGCATTGATGAAAAATGACAAAAGAGAAACTTCTCCCATCCATCGCATCATTAACCGGTGTAGGATTAAAGATCAGGTCCAGGATTCGAGTCAAATCGACCTTCCCTCTCATCTCAGGGTGAGGCAAGGAATTCCATCAAATGTTCGTTGTTCAATATGTCGGTTGCTCAAGAAGTTGGACTAG

mRNA sequence

ATGGATCGGATCGAAGGTTTGTCCATTGGGATTGGGCATGGACGAGCCTCGACTGGGCCAGCATTGATGAAAAATGACAAAAGAGAAACTTCTCCCATCCATCGCATCATTAACCGGTGTAGGATTAAAGATCAGGTCCAGGATTCGAGTCAAATCGACCTTCCCTCTCATCTCAGGGTGAGGCAAGGAATTCCATCAAATGTTCGTTGTTCAATATGTCGGTTGCTCAAGAAGTTGGACTAG

Coding sequence (CDS)

ATGGATCGGATCGAAGGTTTGTCCATTGGGATTGGGCATGGACGAGCCTCGACTGGGCCAGCATTGATGAAAAATGACAAAAGAGAAACTTCTCCCATCCATCGCATCATTAACCGGTGTAGGATTAAAGATCAGGTCCAGGATTCGAGTCAAATCGACCTTCCCTCTCATCTCAGGGTGAGGCAAGGAATTCCATCAAATGTTCGTTGTTCAATATGTCGGTTGCTCAAGAAGTTGGACTAG

Protein sequence

MDRIEGLSIGIGHGRASTGPALMKNDKRETSPIHRIINRCRIKDQVQDSSQIDLPSHLRVRQGIPSNVRCSICRLLKKLD

Homology

[Close]

BLAST of Lsi09G019220 vs. ExPASy TrEMBL
Match: A0A396JHU6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0326391 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 34 HRIINRCRIKDQVQDSSQIDLPSHLRVRQGIPSNVRCSICRLLKKLD 81
          HRIINRCRIKDQV+DSSQIDLPSHLRVRQG    VRCSI RLLKKLD
Sbjct: 7  HRIINRCRIKDQVRDSSQIDLPSHLRVRQG-SLLVRCSISRLLKKLD 52

[Close]

BLAST of Lsi09G019220 vs. NCBI nr
Match: GFA56927.1 (peptidase C50, separase [Tanacetum cinerariifolium])

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-16
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 13 HGRASTGPALMKNDKRETSPIHRIINRCRIKDQVQDSSQIDLPSHLRVRQGIPSNVRCSI 72
          HGR STGPALMKNDKR+TSPI  +   CR+KDQVQDSSQID+PSHLRVRQGI +NVR SI
Sbjct: 1  HGRTSTGPALMKNDKRKTSPIASLTG-CRMKDQVQDSSQIDIPSHLRVRQGIQANVRSSI 59

[Close]

BLAST of Lsi09G019220 vs. NCBI nr
Match: RHN75918.1 (hypothetical protein MtrunA17_Chr2g0326391 [Medicago truncatula])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 34 HRIINRCRIKDQVQDSSQIDLPSHLRVRQGIPSNVRCSICRLLKKLD 81
          HRIINRCRIKDQV+DSSQIDLPSHLRVRQG    VRCSI RLLKKLD
Sbjct: 7  HRIINRCRIKDQVRDSSQIDLPSHLRVRQG-SLLVRCSISRLLKKLD 52

The following BLAST results are available for this feature:

BLAST of Lsi09G019220 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G019220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A396JHU6	1.3e-11	87.23	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0326391 ...	[more]

BLAST of Lsi09G019220 vs. NCBI nr


Match Name	E-value	Identity	Description
GFA56927.1	3.7e-16	78.33	peptidase C50, separase [Tanacetum cinerariifolium]	[more]
RHN75918.1	2.8e-11	87.23	hypothetical protein MtrunA17_Chr2g0326391 [Medicago truncatula]	[more]

BLAST of Lsi09G019220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G019220.1	Lsi09G019220.1	mRNA