Lsi09G019080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G019080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Phosphorylated adapter RNA export protein
Location	chr09: 27919281 .. 27921841 (-)
RNA-Seq Expression	Lsi09G019080
Synteny	Lsi09G019080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTAAATACTATTTCTTCTCCCTCTCACTGCATTAGCAATTTAGCAGTTAGCAGTGAGAAGTTCAGCGCCCATTTTTCCCCTTTTCCTTGTTCTCCAATCTTCATATTTCCTTCGGAGCTTCTCTACTACAACCCTCTCCGCCGCACTCGCATCCCATTTCCATCGCTCTCTTCCTTCAGATTCCCCGTTAAAGCTTCACCTCCCCACTCGATTATTCCTCTCTTTACTTTCTGGGTAAGTTTTCAACTTAATTTTTTTATTGCATTTCAACCGCACCCATTTCAATTATAACTTATTTTTCTCCTCTTCTTTTGTGGTTCATACTTAGATGATGCCTGAACTATATTTTCGTATCTGCTACTTACCATTCAAGTTCAATCAATTAGTAGGAGGCTGTTGACTACACTTTGCTGTGTATATATATATGTTTTTATTTACATTTTTTACTCTTTCTTTGAAGCTATGATTGATCAGGATATGGATTGTTTTTATTTATGCTCTATCTAGTAGTTACCATATTGAATTAAGGCCATTCTTTTGAGCAATAATTTTGTGCCATCCTCCGATGGAAATTTCCATAGGCTTTTAGAATTGAGAGACAAATTCTTATTTTCGAAGTTTTCAGTATCAAGATTCCCTTAAGGGAAGAGCTTGACTTTGCTCCGAGGATGAAAATGGGAGCCACCATTTTTTGCTGTTTACCCGCCAGAAAGTTCCTTAAGATTCTTTCAATAGTGTTGGCAACCACATCCTTAGAAGCACAGACACTTTAGTTTGGCTAGCGTGTCCGTGTCCGACACTCCGACATTTCAACACTTGTTTGACACGCATCAAACACTTGTTAGTGCAACAAATGTGTTAGACATGCATTGAACACTTGTTGAATAGACTAAAAAGACACATATAGACAATAATAATAACTTTTGAGTGTGAAATACATCAAGGTTGCATATAAATGCATCATATTTTAGTATGAAAATGATATATATTTTTAAAAATGTATATTTTAATTAACGTGTCCTTGTCGTGTCGTGTCCTAGATATTTAAAATATGGCGTGTCGCCGTGTCCGTGTTGTGTCGTATCCGTGTCTCGTATCCGTATCCGTGCTTCTTAGACCACATCTTTAGATGAACTTAATAAGAGATGAGAAACTCTTGGTCTCTCCTAGATCCTGAGGTAGAAAAAAAAAGGGTCTTGACAACCAATTTTGACATTTTCTTGTAAAGGGAGTCCTTTTTGTGGGCTTGGTTTTTTATATGTCCGTGTATTATTTCATTTTTTTTCAATCAAAACCGTTTCTTTTCATAAAAAAAAATCTCATTGAACGCCCAAAAACTATGCAAGTACTGATTTCATTTTCGTCTTGCATATCTTGATAATTTCAAGTTGCAGTTTCTATATGTTCCCTGAAACTTTCTCTAGGATGTCTGATTATTTTATGAAATCTTTTGTTTCTCTGAACAAAGAGTGTGTCTGATTATTTCATGTAGTTGAGGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATGACTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATAGATAGCAATATCAATACAGATAAAAGCAGTGTTACTGATCTCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTAAGTGGAATTTGCTAATCATGTTGTATGCATGCAAGTGCATGGAAAAAGAAGCAATATTGCAAGCACACTTTCTTTAGATACCTTTTTTTTTTTTTTTTGGAAATCCATTTTAGTTTTGTGAAGCAAATAAATGGATAGATTTAACAGGAGTTTTTACTCTGGTTGCTATATTTATGCTGATTTCTATTTCTTTCAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTATTATGATTTTCTTATAACCTGATAAAAGAATAGTTTGTCTGCTTGAGTGATGAAAATCTCTGACCTATCCATTTGTATTAGTTTGAAAACTTCCCTTCTGTTTCTTGAAGTTAGTTTGAAAATGAACCGAACTGACTAGCCATTAACTAACCAAACCAACATAAATGGGTCTCATCTGTTTTCCCTTTTGGTTTGCATTCAGCCCCCTAGTGAGTACAACTCATGAATAATTACCACTGTTGGATATACCTTTGTTCTGTACTTTCCGTATCCTCAATACTTTTTCTGGGGCCACAAACGATTTTGCTGCCTTTCTGCTAAAAATGAAAATCTTCAGACTTAATTTTTTGAGTTTTGACTGGCCTGCCTAATCATGGCCATCCACTCCAGACTCCAGTAAGTATCATACCACACAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCCGAAGTCATTTTGCTCCTTTTAA

mRNA sequence

AAAACCCTAAATACTATTTCTTCTCCCTCTCACTGCATTAGCAATTTAGCAGTTAGCAGTGAGAAGTTCAGCGCCCATTTTTCCCCTTTTCCTTGTTCTCCAATCTTCATATTTCCTTCGGAGCTTCTCTACTACAACCCTCTCCGCCGCACTCGCATCCCATTTCCATCGCTCTCTTCCTTCAGATTCCCCGTTAAAGCTTCACCTCCCCACTCGATTATTCCTCTCTTTACTTTCTGGTTGAGGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATGACTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATAGATAGCAATATCAATACAGATAAAAGCAGTGTTACTGATCTCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGCCCCCTAACTCCAGTAAGTATCATACCACACAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCCGAAGTCATTTTGCTCCTTTTAA

Coding sequence (CDS)

ATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATGACTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATAGATAGCAATATCAATACAGATAAAAGCAGTGTTACTGATCTCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGCCCCCTAACTCCAGTAAGTATCATACCACACAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCCGAAGTCATTTTGCTCCTTTTAA

Protein sequence

MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEPPNSSKYHTTQSLFIFNQYYFLPLQILLPKSFCSF

Homology

[Close]

BLAST of Lsi09G019080 vs. ExPASy TrEMBL
Match: A0A6J1H592 (Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC111460255 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 119

[Close]

BLAST of Lsi09G019080 vs. ExPASy TrEMBL
Match: A0A6J1KUZ4 (Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC111498940 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGE ++ NI+T+KSS+TD+QAPSID RSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSE IKE
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKE 119

[Close]

BLAST of Lsi09G019080 vs. ExPASy TrEMBL
Match: A0A1S3CD38 (Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC103499036 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.9e-47
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE D+ ENDDVEM DVEEGEFID+NIN +KSS TD+QAPS DQRSKNRK
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 119

[Close]

BLAST of Lsi09G019080 vs. ExPASy TrEMBL
Match: A0A5D3DLH5 (Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00350 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDG ENILEAIYE D+ ENDDVEM DVEEGEFID+NIN +KSS TD+QAPS DQRSKNRK
Sbjct: 1   MDGHENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 119

[Close]

BLAST of Lsi09G019080 vs. ExPASy TrEMBL
Match: A0A0A0KBJ7 (Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-46
Identity = 104/119 (87.39%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYEDD LENDDVEM DVEEGEFID NIN +KSS TD+QAPS DQRSKNRK
Sbjct: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRK 63

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
            RTKKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 64  HRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKE 122

[Close]

BLAST of Lsi09G019080 vs. NCBI nr
Match: XP_023547831.1 (uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-48
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID RSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 119

[Close]

BLAST of Lsi09G019080 vs. NCBI nr
Match: KAG7013367.1 (hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 5.5e-48
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRK
Sbjct: 64  MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 123

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 124 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 182

[Close]

BLAST of Lsi09G019080 vs. NCBI nr
Match: KAG6574787.1 (hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 5.5e-48
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRK
Sbjct: 76  MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 135

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 136 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 194

[Close]

BLAST of Lsi09G019080 vs. NCBI nr
Match: XP_022959193.1 (uncharacterized protein LOC111460255 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 5.5e-48
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKE
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 119

[Close]

BLAST of Lsi09G019080 vs. NCBI nr
Match: XP_023006092.1 (uncharacterized protein LOC111498940 [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-47
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRK 60
           MDGQENILEAIYE+DDLENDDVEMVDVEEGE ++ NI+T+KSS+TD+QAPSID RSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKE 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSE IKE
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKE 119

[Close]

BLAST of Lsi09G019080 vs. TAIR 10
Match: AT3G20430.1 (CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-19
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MDGQENILEAIYEDDDLEN-DDVEMVDVEEGEF-IDSNI------NTDKSSVTDLQA--- 60
           M+G+E++L+AI E+D  EN +DVEMVDVEEGE  +D ++      N D   V D +A   
Sbjct: 1   MEGEESLLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILG 60

Query: 61  --PSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGC 120
               + Q +KN KR+ KKKK K    +   +   ++ FV D CRRLKEKKSYM+YTAVGC
Sbjct: 61  EKNGLQQTNKN-KRKKKKKKRKGPVMDKPMS---VDWFVRDTCRRLKEKKSYMIYTAVGC 120

The following BLAST results are available for this feature:

BLAST of Lsi09G019080 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G019080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H592	2.6e-48	88.24	Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KUZ4	1.7e-47	87.39	Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A1S3CD38	2.9e-47	88.24	Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC10349903...	[more]
A0A5D3DLH5	1.1e-46	87.39	Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KBJ7	3.2e-46	87.39	Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G07...	[more]

BLAST of Lsi09G019080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547831.1	2.5e-48	89.08	uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]	[more]
KAG7013367.1	5.5e-48	88.24	hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574787.1	5.5e-48	88.24	hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959193.1	5.5e-48	88.24	uncharacterized protein LOC111460255 [Cucurbita moschata]	[more]
XP_023006092.1	3.5e-47	87.39	uncharacterized protein LOC111498940 [Cucurbita maxima]	[more]

BLAST of Lsi09G019080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20430.1	4.4e-19	48.48	CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-bindi...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038092	Phosphorylated adapter RNA export protein, RNA-binding domain superfamily	GENE3D	1.10.10.1440		coord: 77..126 e-value: 7.9E-7 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
IPR039047	Phosphorylated adapter RNA export protein	PANTHER	PTHR13135	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G019080.1	Lsi09G019080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006408	snRNA export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding