Lsi09G018240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G018240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Stress-associated endoplasmic reticulum protein 2-like
Location	chr09: 27049754 .. 27053374 (+)
RNA-Seq Expression	Lsi09G018240
Synteny	Lsi09G018240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAGTCAATGTTCAATCTCTTTGGATCAGAGTGGTGACCGGAGAGAAGTCTCGCCGGCCGGCCAGGAGGAGGATCGATTCACTGCAGTTCTTCTAATCTCTCCGGCTTCTATCGTGTCTCCGGCTACCCAATTTCTGGCAAAATCATGGTAATTTTCCTTCCCATTTGATTTACCTCTCAGATTGTAATTGCGATGGATTATTGTTCTCGTTTCTGTATCTCCGATTGGTCCTATCTGTTATTTCTCCTGAGCTGGATCTTGGAACTATCTAGATTAGCATTTGTTGTTGTTGATTGTGATCCTTTTTCTGTTTTCTTTGTCGAGAATTCAATCTGAACCTGTTCTGTTTCGCCTCTATAGGGTTTTTTTGTTTGACTTTTGGCTAATTGCATCCGATTGCATCTCATTCCGAAATTGAGTGGTTAAAATGTTTGTATCTTGGTCTTTAGACATTGTATGACGTGAGTAATTTGGATTGCCCAAGTCTCTTAATTTTTTTTTCTTTTAATATCCATGAGTCTCCGGACCCTACAACATTAGGTCTTAATTTTTGAAAAGAGATTTTTTTGTAGGAATGACCCATTCTGAGCTCCCTGAATGATTAATGACCTGCCAAAAACAAATGAAAACTAAGTCAAATTGCAAGACCATCGCGTTAAAGATGACCATATCTCAGTAGCATTCTTCATTTTTCTCCGCTACACACCAATATTCATGGTGAAAGCACAGCAAATGTTAGGATTACGATAGACATGACCCTCCCGATACTGTAGGTAGTGCGCTTTTGACCTAAGTAGAAGGTTAGGGTCACTAGGGGAGTGTGAATGGGTTAGGGTCATTAGGAGATTGAGAATGAGTCATACTTACAAAAATCTCATTTGAAAGGCTCTTTAGTTGGCCTAAATCTTGATGAAGATAATTATAGGATAATTAGTATATTTTAGTTTAATATTTGTTTGGTTGTTAATTTAGTTTAATTAGTGTTTAATTACTATTTTAGAATTAAATAGTCAATTTAGAGTTGTAATAGAAAGCTTTTGATTATCCAATTTGAATATAGAACTTTGTGTTCTCTTTGAGAGAGCTCTCTATTGAGGAATGGATTTTCTTGTTTGGCCATGGATTTGGCCTAAATACTTTTCCCGCATCAAATCTCTAGATGAAGCCTACCTGAGAAGATTGAGGAAAACGTTGAGGGTTGAAAAGAAACTTTTAGTAGAAGAATAATTGGAAATAAGTACTCTCGCTTGGCTGCTAATCTAAGTTGAGGGTTGTTTTTCCAAGTATCACTTTTTAATAAGATCATGTTAACCTGAGATTTTTGGTTGGAATATGGTAAGGGCATTATTTTTAATGGGAAAAATTTGAGCTTTTGTGATGATTTCATTTGGTTTTGAATTGTTGGTGTTACTGAAATGACTATATTAAATTTCGATATCTTGAGCTGCCTTTCTGAACAGTACTTGCTGAACTTAACCTTCTACTTTTGTAGACAACATCAAGGCGTCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAAGAATATCACAAAGAGAGGAGCTGTTCCAGAGACGTCCGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCGTATTTGTTGTCATTGGATCCTGTAAGACTAATCCTTTGTAGTATCTATATCATTTCAGTTTTTGCTTCATCTGATAAATAATTGTAGTGGCTGACCAAATATACGAGTCTTAGTTCTAGGTATAGGGTGGAGCCAAGGACACAAGATAGTATATAATAAAAAGATTTTCTAGTTTTTCTCTAACTTGATCCTTATATATAATTAGTGTTGATATATATATATATATATATAGGTCCTTTTTTTTTTAAGTAAACAAGTGGGATATGGGGATTTGAACATCCGGCATCGAAGGAGTACACCGCTAGGTTATGCTCACTTTGGATATACAAAGTTAGAACTTTATCCCCACCCAGTCGATTTATTGATGGTGCATGCAGTAAGCTTTTCCGGTATTCATCTCCAGAGCCGATTAGATGCTTCAATCATTCTTTCATATCTGTCTCCTTATTTTTTTTCACGTATATATTTTGAGTGCACAGCTCTATTATTTTATTAGGATTCCCCTCACATGTTAAAAAGGATGGTCTCCCTGGGACCTTATTCCGTCCAAACTCTCATCGGATTCATCTTTCTTCCTTCTATTCTCTTCTCTTCTGCACTTATTATGCTTTTAAGTAAAATCTTCTTCCTCCTTAGCGTAGTTTCCTGGTCCTGGGATGTAATTTTGCCAATTCTATAAAAAATGTTGTGCTTCTTCCAGCGAAATGCCCGTGATGAACATATGCATTCTACTATGCCCTATGTCTAAGGGAATGTATTCAAGTCATTGTGGTCATCTACCTAAGATTTATTGATAGGTTTTCTTGATTACCAAATGCACTAGGGATAGGTTTACTAGATTTGTTTCAACTCAAGACAGAATTTATTCATCTTGTCTTGCAAGGTTTAGATAATCTTGGTAGATCCTTCACTTACATTTTACATGGTTTTACCTCATCACTCTAGAACAACCTTCATTACTTGTTTTACTATGGCTATATGCTGTTAACAACAATCACTAGATTTCAATTTGAACAAATTCAAGAACAAAGAACACAAAACACACTAAAAGATGAAGATAGAAATGTATATATATTGCAAGACCAAAAGAAGTTACAATATATCATAGCCATTTGAGAGGGGCTCTCTCCCACTTTCCCACAATGGAAATTCTTAACAAAATGATCATCCTTTTGAAGTTCCTAACACACTATATTTATAATCAAGGCACCCTTAACTAATTACCTTTATCACTTTATGCCGTTACTATCATCCTACTAATAACCCTAATATATTTCTAATTAGGACTCTCACATATATCTCTCTAAATGAAGCTGCTCAGGATTGCGACATCATGTTGGTCACAATCCTAAAAACGAGCGAATTTGTTGTATTAGAGTCTCTATTGTATTTAGAGTATCATATTGTTTCTGATCTTGGTTTATTCAACAGCTCTCTTCCAGATAATCAGGACGGCAACAGGCGGAGGCATGGGTTGATGTAATGCTCTGATTATGAGATGGTGTTACAGTTTGATGTTGTCCTCCCTTTATTAGGTTGTAGGATGAACACAAAGGAAAACTCTTTATTTTTTATTTTTTAAAATTGAATTGATTCCGCAGTTCGTTCTTATCGTGGACATTTCAAGAATTTTGATAATAGAATGTTTACAGTTCTCTTAAGGAAAAAGGTACAGCTCAATTGGGTTAAAGTATATGCAGAGAGTTCGAATTTCTCCCCTCCACTAGTTTAACTGAAATTGTTGTCTTTTCATAAATGGGTTTAGTTCATTAACACTTGAATGATTGATTAATACAATATAGAGAATTAAGTGGATTTTTATTAAAGATGTTTAATCGAATTTTCAACCTTTAGAGAGTAAGGTCGTGATAATTATCATTGAACAAAGAATAATACTTAAAATATATTTTTTTACTTAGTACATTTGTTTTAAACAACTTTGAAAATTAAAATTAATTATATTATTATCTTTCTTATATATGTTTA

mRNA sequence

ATGGATCAAAGTGGTGACCGGAGAGAAGTCTCGCCGGCCGGCCAGGAGGAGGATCGATTCACTGCAGTTCTTCTAATCTCTCCGGCTTCTATCACAACATCAAGGCGTCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAAGAATATCACAAAGAGAGGAGCTGTTCCAGAGACGTCCGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCGTATTTGTTGTCATTGGATCCTCTCTCTTCCAGATAATCAGGACGGCAACAGGCGGAGGCATGGGTTGATGTAATGCTCTGATTATGAGATGGTGTTACAGTTTGATGTTGTCCTCCCTTTATTAGGTTGTAGGATGAACACAAAGGAAAACTCTTTATTTTTTATTTTTTAAAATTGAATTGATTCCGCAGTTCGTTCTTATCGTGGACATTTCAAGAATTTTGATAATAGAATGTTTACAGTTCTCTTAAGGAAAAAGGTACAGCTCAATTGGGTTAAAGTATATGCAGAGAGTTCGAATTTCTCCCCTCCACTAGTTTAACTGAAATTGTTGTCTTTTCATAAATGGGTTTAGTTCATTAACACTTGAATGATTGATTAATACAATATAGAGAATTAAGTGGATTTTTATTAAAGATGTTTAATCGAATTTTCAACCTTTAGAGAGTAAGGTCGTGATAATTATCATTGAACAAAGAATAATACTTAAAATATATTTTTTTACTTAGTACATTTGTTTTAAACAACTTTGAAAATTAAAATTAATTATATTATTATCTTTCTTATATATGTTTA

Coding sequence (CDS)

ATGGATCAAAGTGGTGACCGGAGAGAAGTCTCGCCGGCCGGCCAGGAGGAGGATCGATTCACTGCAGTTCTTCTAATCTCTCCGGCTTCTATCACAACATCAAGGCGTCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAAGAATATCACAAAGAGAGGAGCTGTTCCAGAGACGTCCGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCGTATTTGTTGTCATTGGATCCTCTCTCTTCCAGATAATCAGGACGGCAACAGGCGGAGGCATGGGTTGA

Protein sequence

MDQSGDRREVSPAGQEEDRFTAVLLISPASITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATGGGMG

Homology

[Close]

BLAST of Lsi09G018240 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-07
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 36 RLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 95
          R+A+ K     KNIT+RG V +T   + ++YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Lsi09G018240 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-07
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 36 RLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 95
          R+A+ K     KNIT+RG V +T   + ++YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Lsi09G018240 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-07
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 36 RLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 95
          R+A+ K     KNIT+RG V +T   + ++YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Lsi09G018240 vs. ExPASy Swiss-Prot
Match: Q5REZ1 (Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii OX=9601 GN=SERP1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.5e-05
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 36 RLADRKVVRFEKNITKRGAVPETSVK-KGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATG 95
          R+A+ K     KNIT+RG V +TS    G++  VGP LL  F+FVV GS++FQII++   
Sbjct: 8  RMANEK---HSKNITQRGNVAKTSRNAPGEKASVGPWLLALFIFVVCGSAIFQIIQSIRM 65

[Close]

BLAST of Lsi09G018240 vs. ExPASy Swiss-Prot
Match: Q3ZBR1 (Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus OX=9913 GN=SERP1 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 36 RLADRKVVRFEKNITKRGAVPETSVKKGKE-YPVGPLLLGFFVFVVIGSSLFQIIRTATG 95
          R+A+ K     KNIT+RG V +TS    +E   VGP LL  F+FVV GS++FQII++   
Sbjct: 8  RMANEK---HSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRM 65

[Close]

BLAST of Lsi09G018240 vs. ExPASy TrEMBL
Match: A0A5A7TCU9 (Stress-associated endoplasmic reticulum protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G001960 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 3   QSGDRREVSPAGQEEDRFTAVLL------ISPASITTSRRLADRKVVRFEKNITKRGAVP 62
           +SGDRRE SPAGQEEDRF A+LL      IS   +TTSRRLADRKV +FE+NITKRG+VP
Sbjct: 151 ESGDRREDSPAGQEEDRFAAILLHLSGYPISYEIMTTSRRLADRKVGKFERNITKRGSVP 210

Query: 63  ETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATGGGM 98
           ETSVKKGKEYPVGPLLLGFF+FVVIGSSLFQIIRTATGGGM
Sbjct: 211 ETSVKKGKEYPVGPLLLGFFIFVVIGSSLFQIIRTATGGGM 251

[Close]

BLAST of Lsi09G018240 vs. ExPASy TrEMBL
Match: A0A5D3DLW2 (ABC transporter F family member 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001290 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2   DQSGDRREVSPAGQEEDRFTAVLL------ISPASITTSRRLADRKVVRFEKNITKRGAV 61
           + SGDRRE SPAGQEEDRF A+LL      IS   +TTSRRLADRKV +FE+NITKRG+V
Sbjct: 94  EASGDRREDSPAGQEEDRFAAILLHLSGYPISYEIMTTSRRLADRKVGKFERNITKRGSV 153

Query: 62  PETSVKKGKEYPVGPLLLGFFVFVVIGS 84
           PETSVKKGKEYPVGPLLLGFF+FVVIGS
Sbjct: 154 PETSVKKGKEYPVGPLLLGFFIFVVIGS 181

[Close]

BLAST of Lsi09G018240 vs. ExPASy TrEMBL
Match: A0A6J1DMG9 (stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX=3673 GN=LOC111022594 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 31 ITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIR 90
          +TTSRRLADRKVVRFE+NITKRGAVPET+VKKGK+YPVGPLLLGFFVFVVIGSSLFQIIR
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 91 TATGGGM 98
          TATGGGM
Sbjct: 61 TATGGGM 67

[Close]

BLAST of Lsi09G018240 vs. ExPASy TrEMBL
Match: A0A5N5F7T1 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_009387 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 19  RFTAVLLISPASITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVF 78
           R T+    +PA++TTSRRLADRKV RFEKNITKRGAVPET+ KK K+YPVGP+LLGFFVF
Sbjct: 32  RRTSATGSTPATMTTSRRLADRKVERFEKNITKRGAVPETTAKKSKDYPVGPILLGFFVF 91

Query: 79  VVIGSSLFQIIRTATGGGM 98
           VVIGSSLFQIIRTAT GGM
Sbjct: 92  VVIGSSLFQIIRTATSGGM 110

[Close]

BLAST of Lsi09G018240 vs. ExPASy TrEMBL
Match: A0A5A7SLR3 (Stress-associated endoplasmic reticulum protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00420 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-25
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 32  TTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRT 91
           TTSRRLADRKV RFEKNI KRGAVPET++KKGK+YPVGP+LLGFFVFVVIGSSLFQIIRT
Sbjct: 45  TTSRRLADRKVERFEKNILKRGAVPETAIKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 104

Query: 92  ATGGGMG 99
           ATGGGMG
Sbjct: 105 ATGGGMG 111

[Close]

BLAST of Lsi09G018240 vs. NCBI nr
Match: KAA0039916.1 (stress-associated endoplasmic reticulum protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 3   QSGDRREVSPAGQEEDRFTAVLL------ISPASITTSRRLADRKVVRFEKNITKRGAVP 62
           +SGDRRE SPAGQEEDRF A+LL      IS   +TTSRRLADRKV +FE+NITKRG+VP
Sbjct: 151 ESGDRREDSPAGQEEDRFAAILLHLSGYPISYEIMTTSRRLADRKVGKFERNITKRGSVP 210

Query: 63  ETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIRTATGGGM 98
           ETSVKKGKEYPVGPLLLGFF+FVVIGSSLFQIIRTATGGGM
Sbjct: 211 ETSVKKGKEYPVGPLLLGFFIFVVIGSSLFQIIRTATGGGM 251

[Close]

BLAST of Lsi09G018240 vs. NCBI nr
Match: TYK24584.1 (ABC transporter F family member 4 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 4.9e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2   DQSGDRREVSPAGQEEDRFTAVLL------ISPASITTSRRLADRKVVRFEKNITKRGAV 61
           + SGDRRE SPAGQEEDRF A+LL      IS   +TTSRRLADRKV +FE+NITKRG+V
Sbjct: 94  EASGDRREDSPAGQEEDRFAAILLHLSGYPISYEIMTTSRRLADRKVGKFERNITKRGSV 153

Query: 62  PETSVKKGKEYPVGPLLLGFFVFVVIGS 84
           PETSVKKGKEYPVGPLLLGFF+FVVIGS
Sbjct: 154 PETSVKKGKEYPVGPLLLGFFIFVVIGS 181

[Close]

BLAST of Lsi09G018240 vs. NCBI nr
Match: XP_022155455.1 (stress-associated endoplasmic reticulum protein 2-like [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 31 ITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIR 90
          +TTSRRLADRKVVRFE+NITKRGAVPET+VKKGK+YPVGPLLLGFFVFVVIGSSLFQIIR
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 91 TATGGGM 98
          TATGGGM
Sbjct: 61 TATGGGM 67

[Close]

BLAST of Lsi09G018240 vs. NCBI nr
Match: XP_038907144.1 (stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-25
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 31 ITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIR 90
          +TTSRRLADRKV RFE+NITKRGAVP+TS+KKGKEYPVGPLLLGFF+FVVIGSSLFQIIR
Sbjct: 1  MTTSRRLADRKVGRFERNITKRGAVPDTSIKKGKEYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 91 TATGGGM 98
          TATGGGM
Sbjct: 61 TATGGGM 67

[Close]

BLAST of Lsi09G018240 vs. NCBI nr
Match: KAB2599116.1 (hypothetical protein D8674_009387 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-25
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 19  RFTAVLLISPASITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVF 78
           R T+    +PA++TTSRRLADRKV RFEKNITKRGAVPET+ KK K+YPVGP+LLGFFVF
Sbjct: 32  RRTSATGSTPATMTTSRRLADRKVERFEKNITKRGAVPETTAKKSKDYPVGPILLGFFVF 91

Query: 79  VVIGSSLFQIIRTATGGGM 98
           VVIGSSLFQIIRTAT GGM
Sbjct: 92  VVIGSSLFQIIRTATSGGM 110

[Close]

BLAST of Lsi09G018240 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 31 ITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIR 90
          +TTS+RLADRK+ +F+KNI KRG VPET+ KKGK+YPVGP+LLGFFVFVVIGSSLFQIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 91 TATGGGM 98
          TAT GGM
Sbjct: 61 TATSGGM 67

[Close]

BLAST of Lsi09G018240 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 31 ITTSRRLADRKVVRFEKNITKRGAVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIR 90
          +TTS+RLADRK+ +F+KNI KRG VPET+ KKGK+YPVGP+LLGFFVFVVIGSSLFQIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 91 TATGGGM 98
          TAT GGM
Sbjct: 61 TATSGGM 67

The following BLAST results are available for this feature:

BLAST of Lsi09G018240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T073	6.9e-07	50.00	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
Q8N6R1	6.9e-07	50.00	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
Q6TAW2	6.9e-07	50.00	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]
Q5REZ1	6.5e-05	47.54	Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii OX=9601 GN=SER...	[more]
Q3ZBR1	1.9e-04	47.54	Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus OX=9913 GN=SERP1...	[more]

BLAST of Lsi09G018240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCU9	1.4e-34	81.19	Stress-associated endoplasmic reticulum protein 2-like OS=Cucumis melo var. maku...	[more]
A0A5D3DLW2	2.4e-26	77.27	ABC transporter F family member 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1DMG9	5.3e-26	94.03	stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX...	[more]
A0A5N5F7T1	2.6e-25	79.75	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A5A7SLR3	3.4e-25	91.04	Stress-associated endoplasmic reticulum protein 2-like OS=Cucumis melo var. maku...	[more]

BLAST of Lsi09G018240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039916.1	2.9e-34	81.19	stress-associated endoplasmic reticulum protein 2-like [Cucumis melo var. makuwa...	[more]
TYK24584.1	4.9e-26	77.27	ABC transporter F family member 4 [Cucumis melo var. makuwa]	[more]
XP_022155455.1	1.1e-25	94.03	stress-associated endoplasmic reticulum protein 2-like [Momordica charantia]	[more]
XP_038907144.1	5.4e-25	91.04	stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida]	[more]
KAB2599116.1	5.4e-25	79.75	hypothetical protein D8674_009387 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Lsi09G018240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27350.1	2.0e-25	80.60	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	2.0e-25	80.60	Ribosome associated membrane protein RAMP4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 35..91 e-value: 5.3E-24 score: 84.0
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 30..97
None	No IPR available	PANTHER	PTHR15601:SF26	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN	coord: 30..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018240.1	Lsi09G018240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding