Lsi09G017730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G017730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S27
Location	chr09: 26489893 .. 26491232 (+)
RNA-Seq Expression	Lsi09G017730
Synteny	Lsi09G017730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTGCCTGATGGCAGCGCGAGTGCGTAGCCCTAGGCACTTCAAAAACTAAAGGCTGAGATTCATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCTGCTCCTTTATATTCATCCTAGACGGCGCTCTTATCCTCTTTCTTCACATTCGTCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTCCTTCCTGATCATCATGGTAAACTCCAAATTTCCCTGCTGCATTTTGATTTTCGGATCGAACTAATTTCACTTTCTTTCGCGCTATTGACAGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCGTGTAAATCCTTTTGCCTTTGTTTAATCTAATCTTTCTTTCCATGATGATGATCGAGCTGTTCTGTGAATTCTGAATGCAGGACGTGAAGTGCCAAGGTTGCTTTAACATGTAAGTCTTCATCTTTTTTTCATTTATGGTTACTTCAGTATGGACATTTAGTTTTTTTTTTTTTTTAAAAAAATGAATGATGACAAAAAATTATTTGAATGAAAAACAGAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTTCCTTGGCTCAGAATTGGATTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTCTACATTTTGGTTGTTGATTATTCAATTTTGCTTGAGAAGAAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTAATGTTGTCAATGAAACTAAGTTAAAGTCTTGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTCCCCCAATTCTATTTTAATTGATTGATCTGTTTTGATTTGCTTCCCATTACTTCCATGAGATGTAAAATTAGATTGTATTTTCTGCTGCTTTTAATGTTTGAAATATTGAACTGTTCTTTCTCAAGGGGTTTGTCATTTGTAGCCGTGAGTTGCTTGTATAGTACTAAAGAGATTTGTGGTTCTAATCCTCCCCTCCTTATTGTACTAGAATAGTTTGTCATTTGCAAGGCATTAGACTTTCTTGTTTTTGCTTCAGTGTCATAGTGTGTAGTGATTTTCCAATTGCCCCTCTTGATCCTTCTTATTATGATGTCGTGTAGTGGTTGCC

mRNA sequence

CCTCTGCCTGATGGCAGCGCGAGTGCGTAGCCCTAGGCACTTCAAAAACTAAAGGCTGAGATTCATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCTGCTCCTTTATATTCATCCTAGACGGCGCTCTTATCCTCTTTCTTCACATTCGTCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTCCTTCCTGATCATCATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTTCCTTGGCTCAGAATTGGATTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTCTACATTTTGGTTGTTGATTATTCAATTTTGCTTGAGAAGAAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTAATGTTGTCAATGAAACTAAGTTAAAGTCTTGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTCCCCCAATTCTATTTTAATTGATTGATCTGTTTTGATTTGCTTCCCATTACTTCCATGAGATGTAAAATTAGATTGTATTTTCTGCTGCTTTTAATGTTTGAAATATTGAACTGTTCTTTCTCAAGGGGTTTGTCATTTGTAGCCGTGAGTTGCTTGTATAGTACTAAAGAGATTTGTGGTTCTAATCCTCCCCTCCTTATTGTACTAGAATAGTTTGTCATTTGCAAGGCATTAGACTTTCTTGTTTTTGCTTCAGTGTCATAGTGTGTAGTGATTTTCCAATTGCCCCTCTTGATCCTTCTTATTATGATGTCGTGTAGTGGTTGCC

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of Lsi09G017730 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 7.3e-45
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-37
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Lsi09G017730 vs. ExPASy TrEMBL
Match: A0A5D3DLW4 (40S ribosomal protein S27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001830 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. ExPASy TrEMBL
Match: E5GB53 (40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. ExPASy TrEMBL
Match: A0A0A0K9G0 (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of Lsi09G017730 vs. ExPASy TrEMBL
Match: A0A1S3CCJ2 (40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: XP_008459925.1 (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_038875285.1 40S ribosomal protein S27-2 [Benincasa hispida] >ADN33695.1 40S ribosomal protein s27 [Cucumis melo subsp. melo] >KAA0039865.1 40S ribosomal protein S27-2 [Cucumis melo var. makuwa] >KAE8646752.1 hypothetical protein Csa_005058 [Cucumis sativus] >TYK24636.1 40S ribosomal protein S27-2 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 64  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 123

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 124 CQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: XP_006295333.1 (40S ribosomal protein S27-2 [Capsella rubella] >EOA28231.1 hypothetical protein CARUB_v10024423mg [Capsella rubella])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 124 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 183

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 184 CQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010028919.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010057712.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 40S ribosomal protein S27-2 [Juglans regia] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >XP_030450730.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030452017.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030513362.1 40S ribosomal protein S27-2 [Rhodamnia argentea] >XP_030956657.1 40S ribosomal protein S27-2 [Quercus lobata] >XP_031276672.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_031276714.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_038906694.1 40S ribosomal protein S27-2-like [Benincasa hispida] >XP_041012643.1 40S ribosomal protein S27-2 [Juglans microcarpa x Juglans regia] >XP_042982589.1 40S ribosomal protein S27-2 [Carya illinoinensis] >KAA0066103.1 Ribosomal protein S27e [Cucumis melo var. makuwa] >KAF3943728.1 hypothetical protein CMV_029739 [Castanea mollissima] >KAF8013305.1 hypothetical protein BT93_I1220 [Corymbia citriodora subsp. variegata] >KAG6579093.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014613.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 180.6 bits (457), Expect = 5.2e-46
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 170.6 bits (431), Expect = 5.4e-43
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of Lsi09G017730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	7.3e-45	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
O64650	7.6e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q96564	1.7e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
Q8L953	4.9e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	9.6e-37	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of Lsi09G017730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLW4	9.3e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GB53	9.3e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A0A0K9G0	9.3e-43	100.00	40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1	[more]
A0A1S3CCJ2	9.3e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1	[more]
A0A6J1JTM3	2.1e-42	98.84	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1	[more]

BLAST of Lsi09G017730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459925.1	1.9e-42	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 40S riboso...	[more]
XP_022991567.1	4.3e-42	98.84	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_006295333.1	4.3e-42	98.84	40S ribosomal protein S27-2 [Capsella rubella] >EOA28231.1 hypothetical protein ...	[more]
XP_022953224.1	4.3e-42	98.84	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
XP_002512685.1	4.3e-42	98.84	40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro...	[more]

BLAST of Lsi09G017730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	5.2e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	5.4e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	3.5e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	3.4e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 e-value: 1.9E-27 score: 94.7
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 2..85
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16.744337
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 5..85 e-value: 3.0E-49 score: 166.9
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 2..85
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 30..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017730.1	Lsi09G017730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0042788	polysomal ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome