Lsi09G017630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G017630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein LAX PANICLE 2-like
Location	chr09: 26382311 .. 26382958 (+)
RNA-Seq Expression	Lsi09G017630
Synteny	Lsi09G017630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCATTTTGAGGGTTTCCATAATAATAATACCAACAATAATTCTCATGATCATCATCATCATCATCCTCATCTCTTTCCTCTTCAAGATGATTCAACAACAACAACCAACCAAAACCCTTCTACTTCTAAGGATCTAACTCTTCATGATTCCGCTGCCGCCGATAAGGGTTGGCTTCGTCTTAGCATCGGTGCCGCTACGCCTGACGTTGTCGTCAACCACAACAAACACCACCATCACCACCATCAATCGCCAGGGTTTCGCTTTGGCTTAACCGAGCTCGACTTATTACCCTCCGACAGTGGCGTCGTTGGTTCGAAATTGAACGCCGAGTCGTCGTTGGGGGTCGTTGGAGATTTTTCTACGACTCCGGCGTTGGTTTTGCCTCCGCAGCCACCGGAGCTTAATTGGACGTTTAGACCTATCTCCTCTTATAACTCTTCCTCTTCTAATTGCTCTTCTTCTTTTATTCCATTTGGTCCTTACTTTTCACCCCCCTTTCAATTCCACCCTGGACTTGACTTAGTTGCTGCCACCGCCGCCGCCGCCGGATCCAGCTCCGACACTGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCCGGGATTTGGTTTTCTCTTCAACCTTTGGAATTAAACCAGTAA

mRNA sequence

ATGAGTCATTTTGAGGGTTTCCATAATAATAATACCAACAATAATTCTCATGATCATCATCATCATCATCCTCATCTCTTTCCTCTTCAAGATGATTCAACAACAACAACCAACCAAAACCCTTCTACTTCTAAGGATCTAACTCTTCATGATTCCGCTGCCGCCGATAAGGGTTGGCTTCGTCTTAGCATCGGTGCCGCTACGCCTGACGTTGTCGTCAACCACAACAAACACCACCATCACCACCATCAATCGCCAGGGTTTCGCTTTGGCTTAACCGAGCTCGACTTATTACCCTCCGACAGTGGCGTCGTTGGTTCGAAATTGAACGCCGAGTCGTCGTTGGGGGTCGTTGGAGATTTTTCTACGACTCCGGCGTTGGTTTTGCCTCCGCAGCCACCGGAGCTTAATTGGACGTTTAGACCTATCTCCTCTTATAACTCTTCCTCTTCTAATTGCTCTTCTTCTTTTATTCCATTTGGTCCTTACTTTTCACCCCCCTTTCAATTCCACCCTGGACTTGACTTAGTTGCTGCCACCGCCGCCGCCGCCGGATCCAGCTCCGACACTGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCCGGGATTTGGTTTTCTCTTCAACCTTTGGAATTAAACCAGTAA

Coding sequence (CDS)

ATGAGTCATTTTGAGGGTTTCCATAATAATAATACCAACAATAATTCTCATGATCATCATCATCATCATCCTCATCTCTTTCCTCTTCAAGATGATTCAACAACAACAACCAACCAAAACCCTTCTACTTCTAAGGATCTAACTCTTCATGATTCCGCTGCCGCCGATAAGGGTTGGCTTCGTCTTAGCATCGGTGCCGCTACGCCTGACGTTGTCGTCAACCACAACAAACACCACCATCACCACCATCAATCGCCAGGGTTTCGCTTTGGCTTAACCGAGCTCGACTTATTACCCTCCGACAGTGGCGTCGTTGGTTCGAAATTGAACGCCGAGTCGTCGTTGGGGGTCGTTGGAGATTTTTCTACGACTCCGGCGTTGGTTTTGCCTCCGCAGCCACCGGAGCTTAATTGGACGTTTAGACCTATCTCCTCTTATAACTCTTCCTCTTCTAATTGCTCTTCTTCTTTTATTCCATTTGGTCCTTACTTTTCACCCCCCTTTCAATTCCACCCTGGACTTGACTTAGTTGCTGCCACCGCCGCCGCCGCCGGATCCAGCTCCGACACTGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCCGGGATTTGGTTTTCTCTTCAACCTTTGGAATTAAACCAGTAA

Protein sequence

MSHFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAAADKGWLRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVGDFSTTPALVLPPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVAATAAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ

Homology

[Close]

BLAST of Lsi09G017630 vs. ExPASy TrEMBL
Match: A0A5D3DMZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001990 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 181/218 (83.03%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MSHFEGFH-NNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAA-ADKG 60
           MSHFEGFH NNNTNNNSH H H   HLFPLQD  +TTTNQN STSKDLTLHDSAA ADKG
Sbjct: 25  MSHFEGFHNNNNTNNNSHHHQH---HLFPLQDHDSTTTNQNSSTSKDLTLHDSAAVADKG 84

Query: 61  WLRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVV 120
           WLRLS+GA TPDVVV+H  HHHHH Q PGFR GLTELDLLPSD    G   + ESSLGVV
Sbjct: 85  WLRLSVGATTPDVVVHH--HHHHHQQPPGFRLGLTELDLLPSD----GVSKSNESSLGVV 144

Query: 121 GDFSTTPALVLPPQPP-ELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLV 180
           G+FS +PALVLPP PP ELNWTFRPISS+NSSSSNCSSSFIPFGPYFS PFQ HPGLDLV
Sbjct: 145 GNFSPSPALVLPPPPPAELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLV 204

Query: 181 AATAAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
           AATAAAAGSSSD VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 205 AATAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQ 233

[Close]

BLAST of Lsi09G017630 vs. ExPASy TrEMBL
Match: A0A1S3CBC6 (uncharacterized protein LOC103498884 OS=Cucumis melo OX=3656 GN=LOC103498884 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 178/218 (81.65%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MSHFEGFH-NNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAA-ADKG 60
           MSHFEGFH NNNTNNNSH       HLFPLQD  +TTTNQN STSKDLTLHDSAA ADKG
Sbjct: 25  MSHFEGFHNNNNTNNNSH-------HLFPLQDHDSTTTNQNSSTSKDLTLHDSAAVADKG 84

Query: 61  WLRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVV 120
           WLRLS+GA TPDVVV+H  HHHHH Q PGFR GLTELDLLPSD    G   + ESSLGVV
Sbjct: 85  WLRLSVGATTPDVVVHH--HHHHHQQPPGFRLGLTELDLLPSD----GVSKSNESSLGVV 144

Query: 121 GDFSTTPALVLPPQPP-ELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLV 180
           G+FS +PALVLPP PP ELNWTFRPISS+NSSSSNCSSSFIPFGPYFS PFQ HPGLDLV
Sbjct: 145 GNFSPSPALVLPPPPPAELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLV 204

Query: 181 AATAAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
           AATAAAAGSSS  VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 205 AATAAAAGSSSGAVRVIDPPRRPHSGIWFSLQPLELNQ 229

[Close]

BLAST of Lsi09G017630 vs. ExPASy TrEMBL
Match: A0A0A0KC58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091920 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.0e-85
Identity = 177/218 (81.19%), Postives = 183/218 (83.94%), Query Frame = 0


Query: 1   MSHFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSA-AADKGW 60
           MSHFEGFHNNN N+     HHH  HLFPLQD   +TTNQN STSKDLTLHDSA  ADK W
Sbjct: 25  MSHFEGFHNNNNNS-----HHHQHHLFPLQDHD-STTNQNSSTSKDLTLHDSAVVADKSW 84

Query: 61  LRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVG 120
           LRLSIGA TPDVVV HN HHHHH Q PGFRFGLTE+DLLPSD    G   + ESSLGVVG
Sbjct: 85  LRLSIGATTPDVVV-HNHHHHHHQQPPGFRFGLTEVDLLPSD----GVSKSNESSLGVVG 144

Query: 121 DFSTTPALVL-PPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVA 180
           +FS TPALVL PP PPELNWTFRPISS+NSSSSNCSSSFIPFGPYFS PFQ HPGLDLVA
Sbjct: 145 NFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVA 204

Query: 181 AT-AAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
           AT AAAAGSSSD VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 205 ATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQ 231

[Close]

BLAST of Lsi09G017630 vs. ExPASy TrEMBL
Match: A0A6J1GPC0 (protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455912 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-65
Identity = 150/218 (68.81%), Postives = 166/218 (76.15%), Query Frame = 0


Query: 1   MSHFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAAADKGWL 60
           M+HF+ FH NN+NNNS DHHHHH HLFPLQ    TTTNQ PS SKD  LHD+   D+GWL
Sbjct: 24  MNHFQPFH-NNSNNNSLDHHHHHHHLFPLQ-HHPTTTNQTPSASKDRPLHDT--PDEGWL 83

Query: 61  RLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVGD 120
           RLSIGAATPDVVV     H H  Q PGFRFGLTELDLL S +G +GSK +  SS+G    
Sbjct: 84  RLSIGAATPDVVV-----HRHRPQPPGFRFGLTELDLL-SPAG-LGSKGHESSSVG---- 143

Query: 121 FSTTPALVLPPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVAA- 180
             ++P +VL   PPELNWTFRPISS+N SSSNCSSS +P+GPYFS PFQ HPGLDLVAA 
Sbjct: 144 -DSSPGMVLAQPPPELNWTFRPISSHNPSSSNCSSSSLPYGPYFSTPFQLHPGLDLVAAA 203

Query: 181 -TAAAAGSSSD-TVRVIDPPRRPHSGIWFSLQPLELNQ 216
            TAAAAG SSD  +RVIDPPRRPHSGIWFSLQ  E NQ
Sbjct: 204 TTAAAAGPSSDNNIRVIDPPRRPHSGIWFSLQASESNQ 225

[Close]

BLAST of Lsi09G017630 vs. ExPASy TrEMBL
Match: A0A6J1JTN5 (protein LAX PANICLE 2-like OS=Cucurbita maxima OX=3661 GN=LOC111488795 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 6.3e-64
Identity = 146/219 (66.67%), Postives = 162/219 (73.97%), Query Frame = 0


Query: 1   MSHFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAAADKGWL 60
           M+HF+ FH NN+NNNS DHHHHH HLFPLQ    TTTNQ PS  KD  LHD+   D+GWL
Sbjct: 23  MNHFQPFH-NNSNNNSLDHHHHH-HLFPLQ-HHPTTTNQTPSAPKDRPLHDT--PDEGWL 82

Query: 61  RLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVGD 120
           RLSIGAATPDVVV     HHH  Q PGFRFGLTELDLL    G + SK +  SS+G    
Sbjct: 83  RLSIGAATPDVVV-----HHHRPQPPGFRFGLTELDLL--SPGGLSSKGHESSSVG---- 142

Query: 121 FSTTPALVLPPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVAA- 180
             ++P +VL   PPELNWTFRPISS+N SSSNCSSS +P+GPYFS PFQ HPGLDLVAA 
Sbjct: 143 -DSSPGMVLAQPPPELNWTFRPISSHNPSSSNCSSSSLPYGPYFSTPFQLHPGLDLVAAA 202

Query: 181 --TAAAAGSSSD-TVRVIDPPRRPHSGIWFSLQPLELNQ 216
              AAAAG SSD  +RV+DPPR PHSGIWFSLQP E NQ
Sbjct: 203 TTAAAAAGPSSDNNIRVVDPPRSPHSGIWFSLQPWESNQ 224

[Close]

BLAST of Lsi09G017630 vs. NCBI nr
Match: XP_038875677.1 (protein LAX PANICLE 2-like [Benincasa hispida])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 183/216 (84.72%), Postives = 185/216 (85.65%), Query Frame = 0


Query: 1   MSHFEGFH-NNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAAADKGW 60
           MSHFEGFH NNNTNNNSHDHHHH  HLFPLQ DS TTTNQNPSTSKDLTLHD  A DK W
Sbjct: 24  MSHFEGFHNNNNTNNNSHDHHHH--HLFPLQHDS-TTTNQNPSTSKDLTLHDHVAVDKSW 83

Query: 61  LRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVG 120
           LRLSIGAATPDVVV      H+HHQ PGF FGLTELDLLPSD G VGSK    SSLGVVG
Sbjct: 84  LRLSIGAATPDVVV------HNHHQPPGFGFGLTELDLLPSDDGGVGSK----SSLGVVG 143

Query: 121 DFSTTPALVLPPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVAA 180
           DFSTTPALVLPP PPELNWTFRPISSYNSSSSNCSSSFIPF PYFS PFQ H GLDLV A
Sbjct: 144 DFSTTPALVLPPPPPELNWTFRPISSYNSSSSNCSSSFIPFAPYFSNPFQLHHGLDLVTA 203

Query: 181 TAAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
            +AAAGSSSD VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 204 -SAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQ 225

[Close]

BLAST of Lsi09G017630 vs. NCBI nr
Match: KAA0039850.1 (uncharacterized protein E6C27_scaffold122G001250 [Cucumis melo var. makuwa] >TYK24650.1 uncharacterized protein E5676_scaffold266G001990 [Cucumis melo var. makuwa])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 181/218 (83.03%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MSHFEGFH-NNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAA-ADKG 60
           MSHFEGFH NNNTNNNSH H H   HLFPLQD  +TTTNQN STSKDLTLHDSAA ADKG
Sbjct: 25  MSHFEGFHNNNNTNNNSHHHQH---HLFPLQDHDSTTTNQNSSTSKDLTLHDSAAVADKG 84

Query: 61  WLRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVV 120
           WLRLS+GA TPDVVV+H  HHHHH Q PGFR GLTELDLLPSD    G   + ESSLGVV
Sbjct: 85  WLRLSVGATTPDVVVHH--HHHHHQQPPGFRLGLTELDLLPSD----GVSKSNESSLGVV 144

Query: 121 GDFSTTPALVLPPQPP-ELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLV 180
           G+FS +PALVLPP PP ELNWTFRPISS+NSSSSNCSSSFIPFGPYFS PFQ HPGLDLV
Sbjct: 145 GNFSPSPALVLPPPPPAELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLV 204

Query: 181 AATAAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
           AATAAAAGSSSD VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 205 AATAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQ 233

[Close]

BLAST of Lsi09G017630 vs. NCBI nr
Match: XP_008459904.1 (PREDICTED: uncharacterized protein LOC103498884 [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 3.7e-87
Identity = 178/218 (81.65%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MSHFEGFH-NNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAA-ADKG 60
           MSHFEGFH NNNTNNNSH       HLFPLQD  +TTTNQN STSKDLTLHDSAA ADKG
Sbjct: 25  MSHFEGFHNNNNTNNNSH-------HLFPLQDHDSTTTNQNSSTSKDLTLHDSAAVADKG 84

Query: 61  WLRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVV 120
           WLRLS+GA TPDVVV+H  HHHHH Q PGFR GLTELDLLPSD    G   + ESSLGVV
Sbjct: 85  WLRLSVGATTPDVVVHH--HHHHHQQPPGFRLGLTELDLLPSD----GVSKSNESSLGVV 144

Query: 121 GDFSTTPALVLPPQPP-ELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLV 180
           G+FS +PALVLPP PP ELNWTFRPISS+NSSSSNCSSSFIPFGPYFS PFQ HPGLDLV
Sbjct: 145 GNFSPSPALVLPPPPPAELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLV 204

Query: 181 AATAAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
           AATAAAAGSSS  VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 205 AATAAAAGSSSGAVRVIDPPRRPHSGIWFSLQPLELNQ 229

[Close]

BLAST of Lsi09G017630 vs. NCBI nr
Match: XP_004140650.1 (protein LAX PANICLE 2 [Cucumis sativus] >KGN46419.1 hypothetical protein Csa_005690 [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 2.1e-85
Identity = 177/218 (81.19%), Postives = 183/218 (83.94%), Query Frame = 0


Query: 1   MSHFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSA-AADKGW 60
           MSHFEGFHNNN N+     HHH  HLFPLQD   +TTNQN STSKDLTLHDSA  ADK W
Sbjct: 25  MSHFEGFHNNNNNS-----HHHQHHLFPLQDHD-STTNQNSSTSKDLTLHDSAVVADKSW 84

Query: 61  LRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVG 120
           LRLSIGA TPDVVV HN HHHHH Q PGFRFGLTE+DLLPSD    G   + ESSLGVVG
Sbjct: 85  LRLSIGATTPDVVV-HNHHHHHHQQPPGFRFGLTEVDLLPSD----GVSKSNESSLGVVG 144

Query: 121 DFSTTPALVL-PPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVA 180
           +FS TPALVL PP PPELNWTFRPISS+NSSSSNCSSSFIPFGPYFS PFQ HPGLDLVA
Sbjct: 145 NFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVA 204

Query: 181 AT-AAAAGSSSDTVRVIDPPRRPHSGIWFSLQPLELNQ 216
           AT AAAAGSSSD VRVIDPPRRPHSGIWFSLQPLELNQ
Sbjct: 205 ATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQ 231

[Close]

BLAST of Lsi09G017630 vs. NCBI nr
Match: XP_022953329.1 (protein LAX PANICLE 2-like [Cucurbita moschata])

HSP 1 Score: 259.2 bits (661), Expect = 3.1e-65
Identity = 150/218 (68.81%), Postives = 166/218 (76.15%), Query Frame = 0


Query: 1   MSHFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTTNQNPSTSKDLTLHDSAAADKGWL 60
           M+HF+ FH NN+NNNS DHHHHH HLFPLQ    TTTNQ PS SKD  LHD+   D+GWL
Sbjct: 24  MNHFQPFH-NNSNNNSLDHHHHHHHLFPLQ-HHPTTTNQTPSASKDRPLHDT--PDEGWL 83

Query: 61  RLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSGVVGSKLNAESSLGVVGD 120
           RLSIGAATPDVVV     H H  Q PGFRFGLTELDLL S +G +GSK +  SS+G    
Sbjct: 84  RLSIGAATPDVVV-----HRHRPQPPGFRFGLTELDLL-SPAG-LGSKGHESSSVG---- 143

Query: 121 FSTTPALVLPPQPPELNWTFRPISSYNSSSSNCSSSFIPFGPYFSPPFQFHPGLDLVAA- 180
             ++P +VL   PPELNWTFRPISS+N SSSNCSSS +P+GPYFS PFQ HPGLDLVAA 
Sbjct: 144 -DSSPGMVLAQPPPELNWTFRPISSHNPSSSNCSSSSLPYGPYFSTPFQLHPGLDLVAAA 203

Query: 181 -TAAAAGSSSD-TVRVIDPPRRPHSGIWFSLQPLELNQ 216
            TAAAAG SSD  +RVIDPPRRPHSGIWFSLQ  E NQ
Sbjct: 204 TTAAAAGPSSDNNIRVIDPPRRPHSGIWFSLQASESNQ 225

[Close]

BLAST of Lsi09G017630 vs. TAIR 10
Match: AT5G13250.1 (RING finger protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.5e-05
Identity = 68/235 (28.94%), Postives = 94/235 (40.00%), Query Frame = 0


Query: 3   HFEGFHNNNTNNNSHDHHHHHPHLFPLQDDSTTTT---------------NQNPSTSKDL 62
           H    H+   +NN H            Q++  +TT               N N + + + 
Sbjct: 50  HLGSDHHQAKDNNHHQVFRRECSFMADQEEPRSTTSRLSSKEDDHDNNSNNNNINNNNNN 109

Query: 63  TLHDSAAADKGWLRLSIGAATPDVVVNHNKHHHHHHQSPGFRFGLTELDLLPSDSG---V 122
              D     +GWLRLS+G    DV  + +    H       R    EL+L    S     
Sbjct: 110 EAEDHEMRQQGWLRLSLG-HEEDVKPDLDHRQQHQTDPTARRDSFLELNLSSGGSNREEE 169

Query: 123 VGSKLNA-----ESSLGVVGD---FSTTPA-LVLPPQPPELNWTFRPISSYNSSSSNCSS 182
           VG  L++       + G++ +   F T P  ++ P         F P +    SSS+  S
Sbjct: 170 VGLPLSSLFHHQHQAGGMMINPLMFHTRPQDMIGPWAAAAFRTPFVPQNLTQPSSSSSGS 229

Query: 183 SFIP-FGPYFSPPFQFHPGLDLVAATAAAAGSSSDTVRVIDPPRRPHSGIWFSLQ 210
             +P  G YF     F P L         AG SS ++RVIDPPRRPHSGIWF LQ
Sbjct: 230 LMMPLMGQYFGRS-SFQPQLIGNDNPDGVAGPSS-SLRVIDPPRRPHSGIWFLLQ 281

[Close]

BLAST of Lsi09G017630 vs. TAIR 10
Match: AT1G28080.1 (RING finger protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 55/207 (26.57%), Postives = 74/207 (35.75%), Query Frame = 0


Query: 28  PLQDDSTTTTNQNPSTSKDLTLHDSAAADKGWLRLSIGAATPDVVVNHNKHHHHHHQSPG 87
           P++DD T      P      +++     DK WLRL IG    +      K      ++  
Sbjct: 59  PVKDDGTA-----PKNDVVCSINVDDNKDKSWLRLGIG--PEENTDGSYKLQRCCSKNGS 118

Query: 88  FRFGLTELDLLPSDSGVVGSKLNAESSLGVVGDFSTTPALVLPPQPPELNWTFRPISSYN 147
            R    EL L  S S  V S +          D   T  L LP    +L     P   YN
Sbjct: 119 GRENSLELSLFSSSSTAVSSSI----------DHLPTQPLQLPYHHDQLLTMRGPSLVYN 178

Query: 148 ------SSSSNCSSSF---IPFGPYFSPPFQ----------FHPGLDLVAATAAAAGSSS 207
                  +  N   SF    P+ P +  PF+           +  L             S
Sbjct: 179 HQLMKPQTLLNRGFSFPSSKPWIPQYMAPFRPSSLSDRDVTNNNSLSRSCCVDEGGAGPS 238

Query: 208 DTVRVIDPPRRPHSGIWFSLQPLELNQ 216
              RV+DPPRRPHSG+WF LQ  +  +
Sbjct: 239 SEFRVLDPPRRPHSGLWFLLQASQFQE 248

The following BLAST results are available for this feature:

BLAST of Lsi09G017630 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G017630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMZ8	1.1e-89	83.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CBC6	1.8e-87	81.65	uncharacterized protein LOC103498884 OS=Cucumis melo OX=3656 GN=LOC103498884 PE=...	[more]
A0A0A0KC58	1.0e-85	81.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091920 PE=4 SV=1	[more]
A0A6J1GPC0	1.5e-65	68.81	protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455912 PE=4 SV...	[more]
A0A6J1JTN5	6.3e-64	66.67	protein LAX PANICLE 2-like OS=Cucurbita maxima OX=3661 GN=LOC111488795 PE=4 SV=1	[more]

BLAST of Lsi09G017630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875677.1	2.3e-89	84.72	protein LAX PANICLE 2-like [Benincasa hispida]	[more]
KAA0039850.1	2.3e-89	83.03	uncharacterized protein E6C27_scaffold122G001250 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008459904.1	3.7e-87	81.65	PREDICTED: uncharacterized protein LOC103498884 [Cucumis melo]	[more]
XP_004140650.1	2.1e-85	81.19	protein LAX PANICLE 2 [Cucumis sativus] >KGN46419.1 hypothetical protein Csa_005...	[more]
XP_022953329.1	3.1e-65	68.81	protein LAX PANICLE 2-like [Cucurbita moschata]	[more]

BLAST of Lsi09G017630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13250.1	6.5e-05	28.94	RING finger protein	[more]
AT1G28080.1	1.5e-04	26.57	RING finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR47290:SF4	RING FINGER PROTEIN	coord: 30..215
IPR044171	Protein LAX PANICLE 2-like	PANTHER	PTHR47290	RING FINGER PROTEIN	coord: 30..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017630.1	Lsi09G017630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development