Lsi09G017290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G017290
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 25934105 .. 25934491 (-)
RNA-Seq ExpressionLsi09G017290
SyntenyLsi09G017290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAACCAGAAGCGAAAAGGCTTCATGAGGCGATTATATCGAGCCGCAAAATCCGCCGGCAAGGCTAAAGTGAAGCAAAGCAACCCGCCGACGGCGTCTACATCGCTGAATAATAACGACGGCGGCGGCGACTCTTTTGCGTTGTCGAACGAGATGAGATCTGCAAGTAATCCGAAAAGATCGGTGGCGACGGTGCAGAAGCAGACCTCGTCGGCGCACGGCGGATTTCGCGACGGAATCGGTGAAATGCGGGGAGCGTACGGTGGTTATGGTGGCGGCGACGAGAATGTTGACGTAAAGGCGGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTGTACTCAGCAAATTGA

mRNA sequence

ATGGAGAAAAACCAGAAGCGAAAAGGCTTCATGAGGCGATTATATCGAGCCGCAAAATCCGCCGGCAAGGCTAAAGTGAAGCAAAGCAACCCGCCGACGGCGTCTACATCGCTGAATAATAACGACGGCGGCGGCGACTCTTTTGCGTTGTCGAACGAGATGAGATCTGCAAGTAATCCGAAAAGATCGGTGGCGACGGTGCAGAAGCAGACCTCGTCGGCGCACGGCGGATTTCGCGACGGAATCGGTGAAATGCGGGGAGCGTACGGTGGTTATGGTGGCGGCGACGAGAATGTTGACGTAAAGGCGGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTGTACTCAGCAAATTGA

Coding sequence (CDS)

ATGGAGAAAAACCAGAAGCGAAAAGGCTTCATGAGGCGATTATATCGAGCCGCAAAATCCGCCGGCAAGGCTAAAGTGAAGCAAAGCAACCCGCCGACGGCGTCTACATCGCTGAATAATAACGACGGCGGCGGCGACTCTTTTGCGTTGTCGAACGAGATGAGATCTGCAAGTAATCCGAAAAGATCGGTGGCGACGGTGCAGAAGCAGACCTCGTCGGCGCACGGCGGATTTCGCGACGGAATCGGTGAAATGCGGGGAGCGTACGGTGGTTATGGTGGCGGCGACGAGAATGTTGACGTAAAGGCGGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATGGATCGAAAAGTGTACTCAGCAAATTGA

Protein sequence

MEKNQKRKGFMRRLYRAAKSAGKAKVKQSNPPTASTSLNNNDGGGDSFALSNEMRSASNPKRSVATVQKQTSSAHGGFRDGIGEMRGAYGGYGGGDENVDVKAATYILLVRERLKMERSMDRKVYSAN
Homology
BLAST of Lsi09G017290 vs. ExPASy TrEMBL
Match: A0A5A7TED2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002320 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.0e-37
Identity = 97/130 (74.62%), Postives = 105/130 (80.77%), Query Frame = 0

Query: 1   MEKNQKRKGFMRRLYRAAKSAGKAKVKQSNPPTASTSLNNNDGGGDSFALSNEMRSASNP 60
           MEKNQKRKGF+RRLYRAA+SAGKAKVKQ+NPPT STS N+ D G DSFA S+E  SASNP
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPNSGD-GSDSFANSSETESASNP 60

Query: 61  KRSV--ATVQKQTSSAHGGFRDGIGEMRGAYGGYGGGDENVDVKAATYILLVRERLKMER 120
            RSV  ATVQKQ SSAH           GAYGGYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRSVAAATVQKQASSAH-----------GAYGGYGGGDENVDVKAATYILLVKERLKMER 118

Query: 121 SMDRKVYSAN 129
           SMDR+V+  N
Sbjct: 121 SMDRRVFQPN 118

BLAST of Lsi09G017290 vs. ExPASy TrEMBL
Match: A0A0A0KCA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.4e-34
Identity = 92/126 (73.02%), Postives = 99/126 (78.57%), Query Frame = 0

Query: 1   MEKNQKRKGFMRRLYRAAKSAGKAKVKQSNPPTASTSLNNNDGGGDSFALSNEMRSASNP 60
           ME  QKRKGF+RRLYRAA+SAGKAKVKQSNPPT STS N+ D G D FA S+E +SASNP
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGD-GDDPFANSSETKSASNP 60

Query: 61  KRSVA--TVQKQTSSAHGGFRDGIGEMRGAYGGYGGGDENVDVKAATYILLVRERLKMER 120
            R VA  TVQKQ SS H           GAYGGYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 121 SMDRKV 125
           SMDR+V
Sbjct: 121 SMDRRV 115

BLAST of Lsi09G017290 vs. NCBI nr
Match: KAA0039815.1 (hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK24682.1 hypothetical protein E5676_scaffold266G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 97/130 (74.62%), Postives = 105/130 (80.77%), Query Frame = 0

Query: 1   MEKNQKRKGFMRRLYRAAKSAGKAKVKQSNPPTASTSLNNNDGGGDSFALSNEMRSASNP 60
           MEKNQKRKGF+RRLYRAA+SAGKAKVKQ+NPPT STS N+ D G DSFA S+E  SASNP
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPNSGD-GSDSFANSSETESASNP 60

Query: 61  KRSV--ATVQKQTSSAHGGFRDGIGEMRGAYGGYGGGDENVDVKAATYILLVRERLKMER 120
            RSV  ATVQKQ SSAH           GAYGGYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRSVAAATVQKQASSAH-----------GAYGGYGGGDENVDVKAATYILLVKERLKMER 118

Query: 121 SMDRKVYSAN 129
           SMDR+V+  N
Sbjct: 121 SMDRRVFQPN 118

BLAST of Lsi09G017290 vs. NCBI nr
Match: KGN46459.1 (hypothetical protein Csa_005040 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 4.9e-34
Identity = 92/126 (73.02%), Postives = 99/126 (78.57%), Query Frame = 0

Query: 1   MEKNQKRKGFMRRLYRAAKSAGKAKVKQSNPPTASTSLNNNDGGGDSFALSNEMRSASNP 60
           ME  QKRKGF+RRLYRAA+SAGKAKVKQSNPPT STS N+ D G D FA S+E +SASNP
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPNSGD-GDDPFANSSETKSASNP 60

Query: 61  KRSVA--TVQKQTSSAHGGFRDGIGEMRGAYGGYGGGDENVDVKAATYILLVRERLKMER 120
            R VA  TVQKQ SS H           GAYGGYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 121 SMDRKV 125
           SMDR+V
Sbjct: 121 SMDRRV 115

BLAST of Lsi09G017290 vs. NCBI nr
Match: KAG6592959.1 (hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 78/117 (66.67%), Postives = 82/117 (70.09%), Query Frame = 0

Query: 11  MRRLYRAAKSAGKAKV--KQSNPPTASTSLNN--NDGGGDSFALSNEMRSASNPKRSVAT 70
           MRRLYRAA+SAGKAK   KQSNPP +          GG   F   +EMRS S P +S A 
Sbjct: 1   MRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRSESYPNKSAAA 60

Query: 71  V---QKQTSSAHGGFRDGIGEMRGAYGGYGGGDENVDVKAATYILLVRERLKMERSM 121
               QKQ SSAHGGFRDG GEMRG YGGY GGDENVDVKA TYIL VRERLKMERSM
Sbjct: 61  PRAGQKQASSAHGGFRDGNGEMRGTYGGY-GGDENVDVKATTYILWVRERLKMERSM 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TED21.0e-3774.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCA42.4e-3473.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0039815.12.1e-3774.62hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK2468... [more]
KGN46459.14.9e-3473.02hypothetical protein Csa_005040 [Cucumis sativus][more]
KAG6592959.14.6e-2466.67hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..75
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G017290.1Lsi09G017290.1mRNA