Lsi09G017020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G017020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	major pollen allergen Ole e 6-like
Location	chr09: 25529667 .. 25530918 (+)
RNA-Seq Expression	Lsi09G017020
Synteny	Lsi09G017020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCCACTCACAAAAGAAAGCACTATAAAAGCCAAGAAAAAAAGAAAAAACAAGAAACAAGAAACTAAAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGGTACTTTCTCATCTTCTCTCTACATCTTTCTTCTAATATCGACCATGTTAAATTAGGGTTAAAATATCATTCTGATTCTAGTCCCTACGGCTTATTTATTCTATATCTTTTTAAAAAGTTTTTGTTAATAGTAAAATGATTTTAATTGGATAAATGGTGGACTACACAGAGATATTTTCATCCACATTTCATATTCATAAGTTTTGCATCGATATAAAAAATGCATCAACATTTCCATTCTATCGTAAATAAAAAAAAATGGACAATATATATATATATATAAATAAAAAATATTTTCAGGGTTCTTATACTTTTATGCGAATTTAAACATTTTTTTAGGAAAATTACTCTAAACTATTTACAAATATAGAAAATAGAAAAATTTTACTTACTGTATTTGCAAATTGTTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTATTTTCATGAAACCTTGCTTCTAATGGAGCTTCTAATGGTTGTGTATTTGTTTTACAGATAAGCTGCACATCGAGTTGCATTGAATAATGAAAAACAAAGGAAAGAAGAGATCTTGAGGAGGGTCAAATTAGTGATTGTATTAATTAAATCAAGTTTATGAGAGGAGTTAATAAGCCTCCTTTCTCCTCCTTAATTTTTAAATTGTGATTTTGATAATTCAATTTATAATTTTCTTTTCATATAGGTGGATCATCGACCATTTTCATGGTTCTTAATTTTTTCTTTATTTGAAAACAAAAAATAATTCAAATTGCCCCAAACATTATTATTATTGTTGAGTAATAACTCTTTCCATTTGCATCTTGTTTTATTTGGGATAATGATTGTCAATTTGATCAGGTTTGAATTTGAATATGATGAGAAATGAACAAATTTGAG

mRNA sequence

CCATCCACTCACAAAAGAAAGCACTATAAAAGCCAAGAAAAAAAGAAAAAACAAGAAACAAGAAACTAAAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATAAGCTGCACATCGAGTTGCATTGAATAATGAAAAACAAAGGAAAGAAGAGATCTTGAGGAGGGTCAAATTAGTGATTGTATTAATTAAATCAAGTTTATGAGAGGAGTTAATAAGCCTCCTTTCTCCTCCTTAATTTTTAAATTGTGATTTTGATAATTCAATTTATAATTTTCTTTTCATATAGGTGGATCATCGACCATTTTCATGGTTCTTAATTTTTTCTTTATTTGAAAACAAAAAATAATTCAAATTGCCCCAAACATTATTATTATTGTTGAGTAATAACTCTTTCCATTTGCATCTTGTTTTATTTGGGATAATGATTGTCAATTTGATCAGGTTTGAATTTGAATATGATGAGAAATGAACAAATTTGAG

Coding sequence (CDS)

ATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATAAGCTGCACATCGAGTTGCATTGA

Protein sequence

MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFCEVKCDEDCDEKETADKLHIELH

Homology

[Close]

BLAST of Lsi09G017020 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 36 DAKYKSCYETCSKECLQKGNGESFCEVKCDEDCDEKETADKL 78
          +A++K CY+TC KEC  KGNG +FCE+KCD DC  K+  +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of Lsi09G017020 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.0e-28
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKMIA+FLM IVVVAA QFASAN  +EV KYEAKFDAKYKSC++TC KECL+ G+G+S
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKETADKLHIELH 83
          +CEVKCDEDC+EKE ADKLHIELH
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Lsi09G017020 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.0e-28
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKMIA+FLM IVVVAA QFASAN  +EV KYEAKFDAKYKSC++TC KECL+ G+G+S
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKETADKLHIELH 83
          +CEVKCDEDC+EKE ADKLHIELH
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Lsi09G017020 vs. ExPASy TrEMBL
Match: A0A0A0KPA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN-EEVDKYEAKFDAKYKSCYETCSKECLQKGNGESF 60
          MA KMIA+FLM IVVVAA QFA+AN E+V KYEAKFDAKYKSC+ETC KECL+ G+G+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCDEKETADKLHIELH 83
          CEVKCDEDCDEKE ADKLHIELH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Lsi09G017020 vs. ExPASy TrEMBL
Match: A0A0A0K9Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+AVFLM IVVVA  QF  ANEE  V KYEAKFDAKYKSCYETC KECL+   NGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          SFCEVKCDEDC EKE ADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Lsi09G017020 vs. ExPASy TrEMBL
Match: A0A6J1JXL5 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEEVD--KYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKMIAV L+ IVV+AA Q +SA E V   KYEAKF+AKY+ CYE C KECL+KGNG+S
Sbjct: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKETADKLHIEL 82
          FCEVKCDEDC EKE ADKLHI++
Sbjct: 61 FCEVKCDEDCGEKEAADKLHIKV 83

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: XP_038906677.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFC 60
          MAKK+IAVF M IVV+AAFQFA+ANEEV+KYEAKF+AKYKSCYETC KECL+ GNG+SFC
Sbjct: 1  MAKKIIAVFFMCIVVMAAFQFATANEEVEKYEAKFEAKYKSCYETCEKECLEGGNGQSFC 60

Query: 61 EVKCDEDCDEKETADKLHIELH 83
          EVKCDEDCDEKETADKLHIELH
Sbjct: 61 EVKCDEDCDEKETADKLHIELH 82

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: XP_038875643.1 (major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 143.7 bits (361), Expect = 7.2e-31
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFC 60
          MAKKMIAVF M IVV+AA QFA+ANEEVDKYEAKFDAKYKSCYETC KECL+ G+G++FC
Sbjct: 1  MAKKMIAVFFMCIVVMAALQFATANEEVDKYEAKFDAKYKSCYETCEKECLENGSGQTFC 60

Query: 61 EVKCDEDCDEKETADKLHIELH 83
          EVKCDEDCDEKE ADKLHIELH
Sbjct: 61 EVKCDEDCDEKEKADKLHIELH 82

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 2.7e-30
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFC 60
          MAKKMIAVFLM IVV+AA QF +ANEEV KYEAKFDAKYKSCYETC KECL+KGNG+SFC
Sbjct: 1  MAKKMIAVFLMCIVVMAALQFTTANEEVAKYEAKFDAKYKSCYETCEKECLEKGNGQSFC 60

Query: 61 EVKCDEDCDEKETADKLHIE 81
          EVKCDEDCDEKETADKLHI+
Sbjct: 61 EVKCDEDCDEKETADKLHIK 80

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 8.8e-29
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANE-EVDKYEAKFDAKYKSCYETCSKECLQKGNGESF 60
          MAKKM+AVFLM IVVVAA QFA+ANE EV KYEAKFDAKYKSCYETC KECL  G+G+SF
Sbjct: 1  MAKKMMAVFLMCIVVVAALQFATANEDEVTKYEAKFDAKYKSCYETCEKECLANGSGQSF 60

Query: 61 CEVKCDEDCDEKETADKLHIELH 83
          CEVKCDEDCDEKE ADKLHI+LH
Sbjct: 61 CEVKCDEDCDEKEVADKLHIKLH 83

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: XP_038906482.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFC 60
          MAKK+IA+FLM IVV+ A QF +ANEEVDKYEAKF+AKYKSCYETC KECLQ  NG+SFC
Sbjct: 1  MAKKIIAMFLMCIVVMGALQFGTANEEVDKYEAKFEAKYKSCYETCEKECLQNSNGQSFC 60

Query: 61 EVKCDEDCDEKETADKLHIEL 82
          EVKCDEDCDEKE ADKLHI L
Sbjct: 61 EVKCDEDCDEKEVADKLHIGL 81

The following BLAST results are available for this feature:

BLAST of Lsi09G017020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	1.4e-08	57.14	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of Lsi09G017020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCS2	8.0e-28	79.76	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	8.0e-28	79.76	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]
A0A0A0KPA7	1.1e-27	80.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0K9Z9	1.5e-26	81.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1	[more]
A0A6J1JXL5	4.6e-23	72.29	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 P...	[more]

BLAST of Lsi09G017020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906677.1	1.5e-31	86.59	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038875643.1	7.2e-31	85.37	major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pol...	[more]
XP_038906682.1	2.7e-30	87.50	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038891517.1	8.8e-29	84.34	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038906482.1	3.3e-28	81.48	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]

BLAST of Lsi09G017020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 36..80 e-value: 4.7E-16 score: 60.1
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 36..77
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 42..78 e-value: 1.9E-12 score: 46.9
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..82
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017020.1	Lsi09G017020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016121	carotene catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen