Lsi09G016970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G016970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlycine--tRNA ligase
Locationchr09: 25476990 .. 25482159 (-)
RNA-Seq ExpressionLsi09G016970
SyntenyLsi09G016970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATTGGTTAAGCCACGAAATTGTTGCGGTTGGAGTCTTTGACTTCACGGTGTCCATTTCTTTCTTACTTTCTAAATGTAAAAATTGAATGGAAATGTTAATAGATAGGCCTATTTTTCTTCTTTGTCTATTACATTCATTTTGTGATCACTTTTGGCTATTTACTTGCTCAGTGGTGATATATGATAGTACTGTTTCCTCTGCCCATAATAATCATCGTTTGGTATTAATGAGGTAAATCTGAAGTTTATTCTTTATATCATCATCACATTAAACAATTCTTTTGATGATTATTTCAATAATATTACAGGAATACTGGGCCTCTGTTGGATGTGCTGTGATGCAATGCAGTAACACAGAGGTAAGTTCGGTGTTGACACAACCCTGTAATCTTGACGGTCTTTTTTTGTGTTTATCAGAAGTTTTTTGGTGTAAGGGTGTAAGGCATAACATTGCAATTATTTTATACAAGGGTGTGACATTGCAATTATTTTATACAAGGGTGTAACATTGCAATTATTTTGAATAATTTCTGTTATTGGCCAGGTTGGTGCAGGAACCATGAATCCCTTGACATTCTTAAGAGTTCTTGGTCCAGAACCTTGGAATGTTGCGTAAGTATTCTTTGACACGTTTCTGCAGGAGAGAATGCCTCATTATGTATTGTCTCACTTTGGATGTCTCCTTCATTACATATATTAGAAATCCATGGATTGTTTGTTTCTTTTATTTTGGGTGTCTCCTTCATTACATAGATTAGAAATCCATGGATCATTTGTTTCTTTTTTCAATTTTTTGTTATGAAGTTAGGTTGTAAATAGCCTTTGGAGTCTGAGTCATTTCAAGAATATGGCCACTGCCTCGGGATAGTGCTTTCTTCAGGGTAGTGGGTGGGTGGGTATGTTATTTTAGAGCGAGTTTGCGAATGTTTCAAGATACCTTATTTATTTAGAAATAAGAAATATTTTGCATTTATTTAGTGAAAAGTGCATCAAAAGAAAGTGCAAATTCTCCTAAACTAAACTAAGCTGTCAAGTATTGACTATGATCTACAAAATTTTCCCATCCTTGGAGAGCTATATTTAGTGCTTAGTGACTTTCCTCTCTCTCTCTCTGTTGTTGTTGTTGTTGTTTATTCAGTGTGTTGTGGGTGATGGGAGGGATCCATACTTTTGAGAAGATAAGTGGTTGGGAGATAGACCCATCTGCGCTGTGTTTCCTCATTTGTACCAATTTCTTCTAGGTGAAATCATCTTGTGGCCTTCAATCTCCCTCGGTCAGAGAATAAAAACGTTTTGGAGGGTTTATCTTGTATTTTTATTTTTATTTATTTATTTACTTTTAATCTTTGGCGAACCCCTTTGCCTCTAATCGTTCAGATTTTTCTCTATGTTAAAAGTAAAAATTTACAAAAAGGTGAAGTTTCTTACCTGACAAGTCCTCAATGGAAGAAGTAACATGATAGATCGTGTTTTGAGGGTTTTGTCTAGTTTGATGGGTTCGTAGTGTCACACCTTTTCCAGAGGCCCAACTGAGGACTTTGACCACTTTTTTGGGAGTTGCTCTTTGCTAGTTTGATTGGGGACAATTTCTTTGAGGAGTTTGGCTTCCAGGGACTAGATCAAAAGATGTGTTTGATGGCCAATGAGTACCTTTTTCACTCGCCTTTTCCTGAGAAGGTTGGTTTATGTGGATCATGGGGGTTTATCCGGTGTTATAGGGTATTTGGATGGAGAGGACCAATAAAGTATTTAGAGGGTTGGAGAAAACCAAGGAAGATGTGAGGGCATATCTTCCTTTAGGCTTCGGTTGCTTGTTGGAGCTTTTTCCCTTTTTTTTATTTTTATTTTTTATTTTTTTTATTTCTTTTTATTTTAAAAAAATTATTTATTTATTTATTTTAAAAAGTTGGCTCCTTTTGGTTGGGGTTGGTTTCTTGTATTCCCCTATACTTTTCCATTTTTTGAGCATTAACAGTAACATTAGTGAAAACATTAAAGCTGTTGCTGCTTGTGGAAATTTAGAATTTTAATTGTCACTGTGGAATTCTTTTATGGAAGGTATGTGGAGCCTAGTATACGGCCAGATGATAGTCGCTATGGGGAAAATCCAAATAGACTCCAACGCCACACTCAATTTCAGGTAACATTTGAGTTTGTGATCAAACTTTGGAGTTGTTGAATAATTTATCGAGTTCTCTATTAATTCCTGTAAGAATTTCTACTATTTATGTGTAAACATTAGTTGTCACTATTTGGTCTTTATTGTCATTATTCTTTCCTTATGTGTAATGTAATAAGTCCTCTCTTCTAGGTTTTAGCCCATTGTATTCGGGCCTTTCTTTTGGAGTTTAGATGTTCTAGGTTTTGCTTAGCTCTTAGTTTGGAAGTGATGAGAGTGCTAAGGGGGTGTCAACATAGTTGAGATGTTTGGGTGCACTCCCTGATCCATTGTCGTAATTTGATCATTTTGATCTTGTTTCCATGTTGTATCTTGAGATTTTGCCTCAATTCATTATATCAATGAAAGAGATCTGTTTCCTTTTCAAAAAAAGAAAGAAAGAAAGTCCTCTCTTCTATATGAGGAGACCTAAGCTGCACATGTTAATTAAGTTGCATACGTAAACCCTACAAACCTTAGCCACCTAAATAGCCTACTTTTTGTGCCAGTGCCTTCCTTTTTCCATAAGCTTGCATCATTGTTCTAACCATATTAGTGGTCTTCGTCTTCTACCATAGCCTCACTTACATTCTATCTTTATGTTCGCTGAAGATATGCTTGCCCTTTGCATTTGTGGTTACCAGAGGTTTGTTTGTCTGAGTGTTTGTGGTTGCCAGAGGTCTATTTGCTTAAGTGTTCGTGGTTGCATGGAGATTCTTAAATCACCGATTAACCCAAAAGCTTAAGCTAATGGGTGAAAGCAAATTTAATATTATATCATCTAACACTCCCCCTCACTTGTGGACTTGAAATTTGTAGAAGACCCAACAAGTGGAAATCAATTTTAATTGGGGAGAAAATAACATTGTATGGGTTTGAACATGGGACCTCCTGGACCACCGTTTTTTATACCATCTTAAATCACCGATTAACCCAAAAGCTTAAGTTAATGGGTGAAGACAAATTTAATATTATATCATCTAATAGAGATCTATTTGCTCAAGCATTTGTGCTTTGTGTTCGTGGAGGTTGCCCAAACTTTTGCATTAATCCAACAAAAGTTTTTGTCTTGCTGATGCTATTCCAACTTAATTCCATTCAGCCATTTAGTCGTTTGACTTCGTGGATTGTTGATCTAGTGTTTGTTCAATTGTGCAAATCTGGAGTTTGTTGAACTTTTCACCTGTTGTCTGAATCTTAGATTGGTTCACGTTCTTGTTTAGTTCAAGAACTTGGGTAGGTTATGTCCCAAATCTGATTAGGTTCAATATCTTGTTCAGTCAATTGTTCTCAAAATCTAGTTCGGTTTGTTTAAGTGCCACAATTTGGGATGGATCAAATTCATCTTTAGAAAGTTTGCTAATAGATAAAAGATTATAAACTAGCATCTTTGTATTGTTGTGAAGAATTCGGCTTGAGAGGAATATGTAATAATATAATTTTTGGAAAGGTAGAGCAATTGGGTGAGGAAGTTTGTGAAGCCGCTAGGTTTTAGTTTAAATGCCTTCTTATGAGCGGCACGCCGACACTCACCAGTCACTAAATCTTTTTGTAATTATGACATTGGTCTTGTTCTCTTAGATTGGAGTTCATTCAGTAGTTAGGGTTGGACTCCCTTTTATTGTTTCAGTTGTTTTTTTTTTCTATGTACATCCTCATTTCTCTCAATGGAAGCATGGTTTCTTAAAAAAATATATAAAACAGTATCTTTTTGTCCTTTTTAAATTAAGAGTTCTTATATGTGCTTATTTTTTTTTTTTTTTGTTGCTCTCTTTTCACTTTAATTTTCTTTTATGATACGTGATCACAGGTGATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTTTTCATCCAAAGTCTCTCCGCTTTAGGTAGGACATAATGATCCACTTCGATGAGCTTCGATTGATTTGGCAAACATATATGCTCATGTTTGATAACATGCAGCTGTCATAAAGTGGAAAAGTATTTATCCATATTTATTTTTACGATTCCGCACATTTATACACTTTCTTACATTATATGATTCTCATTAATTTGTGAAGTACACATTTTTTAAATAAAAGAAGAAACTGCTTCATGAATGAAAAGTTTGTCGATAACCCAAGGTAATTTAACTGTTTCAACTCATGCCAAGTAAAAAACTTCACCATCTTGGGGGTTATTAATGAAATATACGGCCAGCTGATGCCATATGCCTCTTCTATATGCTTTATAGGAATTGATGTTGCTGCACATGATATACGTTTTGTAGAGGACAATTGGGAGAGTCCGGTAATCTGTCATATATTGTCCTATCATTTCCTTTCTTTTCTTTTTCAGGGATGTGTGTGTTAATACTACCATGTTCTACATCACTAGGGTTTTTTTTCCTTAAAAAAAAACTTCATTACGATTAAATTACTGTGTAGGCAACATGGATATGAACACTGATGTTTACAGCTGAAATGAAGAGAAGGAAAAGATAACAGAAAATTGAACAATTACTATAAGAATTTAAGTAACCTCGGAATGGGCTGCCGATTGGTCGTCCTATGGATAGACATTAGGAAAATTCCAGTCCACTGACTCTTTAAATTTTGCCACAAAATGTGCTTGGATTCCTAGTTATCATAGGTATTGTCTTCTATTTCCACCATGCCCTGCAAGCTAATTTTGAAGGCATAAAATATTCTAGCTTTTTAACAACTGTTATTCTTATGGCTCTTTATAAAAAAATATTTAAGTCTTCACTTTCCCTACAAAGGAATATATATATTGCAAATCAACAGTTCTCGTTGTTGCCTATTGTCAACATTTTGTTCTATCTTGTTGATATAGATGATGAGGAATGCATACCCGCATTTTGTTTGAATTGAGCTTAATTACAAGTTTGAATCTAAATTTTGAGTTTTCATTAAAAATTGTAGGCATCTAGTTTCCTTGTCATTGGTTTGAACTCTACTTGTGCATTGGACTTGCCACTTGTTTTTTTCACTTCTCTTAGAAAACTTATCCGTTAA

mRNA sequence

ATGGTGGTGATATATGATAGTACTGTTTCCTCTGCCCATAATAATCATCGTTTGGAATACTGGGCCTCTGTTGGATGTGCTGTGATGCAATGCAGTAACACAGAGGTTGGTGCAGGAACCATGAATCCCTTGACATTCTTAAGAGTTCTTGGTCCAGAACCTTGGAATGTTGCGTATGTGGAGCCTAGTATACGGCCAGATGATAGTCGCTATGGGGAAAATCCAAATAGACTCCAACGCCACACTCAATTTCAGGTGATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTTTTCATCCAAAGTCTCTCCGCTTTAGGAATTGATGTTGCTGCACATGATATACGTTTTGTAGAGGACAATTGGGAGAGTCCGGCATCTAGTTTCCTTGTCATTGGTTTGAACTCTACTTGTGCATTGGACTTGCCACTTGTTTTTTTCACTTCTCTTAGAAAACTTATCCGTTAA

Coding sequence (CDS)

ATGGTGGTGATATATGATAGTACTGTTTCCTCTGCCCATAATAATCATCGTTTGGAATACTGGGCCTCTGTTGGATGTGCTGTGATGCAATGCAGTAACACAGAGGTTGGTGCAGGAACCATGAATCCCTTGACATTCTTAAGAGTTCTTGGTCCAGAACCTTGGAATGTTGCGTATGTGGAGCCTAGTATACGGCCAGATGATAGTCGCTATGGGGAAAATCCAAATAGACTCCAACGCCACACTCAATTTCAGGTGATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTTTTCATCCAAAGTCTCTCCGCTTTAGGAATTGATGTTGCTGCACATGATATACGTTTTGTAGAGGACAATTGGGAGAGTCCGGCATCTAGTTTCCTTGTCATTGGTTTGAACTCTACTTGTGCATTGGACTTGCCACTTGTTTTTTTCACTTCTCTTAGAAAACTTATCCGTTAA

Protein sequence

MVVIYDSTVSSAHNNHRLEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESPASSFLVIGLNSTCALDLPLVFFTSLRKLIR
Homology
[Close]
BLAST of Lsi09G016970 vs. ExPASy Swiss-Prot
Match: Q8L785 (Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana OX=3702 GN=EDD1 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.7e-56
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQ SNTEVGAGTMNP TFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 82  EYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 141

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQ LFI SLSALGIDV AHDIRFVEDNWESP
Sbjct: 142 QRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188

[Close]
BLAST of Lsi09G016970 vs. ExPASy Swiss-Prot
Match: B8IZ95 (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) OX=525146 GN=glyQ PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-42
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 20  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQ 79
           YWA  GC + Q S  E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ
Sbjct: 13  YWARQGCVIEQPSGVECGAGTFNPHTFLRVIGPEPWNVAYVEPSRRPTDGRYGENPNRLQ 72

Query: 80  RHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           R+ QFQVI+KP P N QDL++QSL+ALGI+ A HDIRFVED+WESP
Sbjct: 73  RYFQFQVIMKPSPDNVQDLYLQSLNALGINPAQHDIRFVEDDWESP 118

[Close]
BLAST of Lsi09G016970 vs. ExPASy Swiss-Prot
Match: B8DPG0 (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=glyQ PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.0e-42
Identity = 77/106 (72.64%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 20  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQ 79
           +WA  GC +MQ  + E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ
Sbjct: 13  FWAKRGCVIMQPIDVECGAGTFNPSTFLRVIGPEPWNVAYVEPSRRPTDGRYGENPNRLQ 72

Query: 80  RHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
            + QFQVILKP P N QD+++ SL ALGID AAHDIRFVED+WESP
Sbjct: 73  HYFQFQVILKPSPDNVQDIYLDSLRALGIDPAAHDIRFVEDDWESP 118

[Close]
BLAST of Lsi09G016970 vs. ExPASy Swiss-Prot
Match: Q72AU2 (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=glyQ PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-41
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 20  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQ 79
           YWAS GC + Q  + E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ
Sbjct: 13  YWASRGCVITQPIDVECGAGTFNPSTFLRVIGPEPWNVAYVEPSRRPTDGRYGENPNRLQ 72

Query: 80  RHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
            + QFQVILKP P N Q+L++ SL ALGID AAHDIRFVED+WESP
Sbjct: 73  HYFQFQVILKPSPDNVQELYLGSLRALGIDPAAHDIRFVEDDWESP 118

[Close]
BLAST of Lsi09G016970 vs. ExPASy Swiss-Prot
Match: A1VCW8 (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) OX=391774 GN=glyQ PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-41
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 20  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQ 79
           YWAS GC + Q  + E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ
Sbjct: 13  YWASRGCVITQPIDVECGAGTFNPSTFLRVIGPEPWNVAYVEPSRRPTDGRYGENPNRLQ 72

Query: 80  RHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
            + QFQVILKP P N Q+L++ SL ALGID AAHDIRFVED+WESP
Sbjct: 73  HYFQFQVILKPSPDNVQELYLGSLRALGIDPAAHDIRFVEDDWESP 118

[Close]
BLAST of Lsi09G016970 vs. ExPASy TrEMBL
Match: A0A6J1IEH3 (Glycine--tRNA ligase OS=Cucurbita maxima OX=3661 GN=LOC111472479 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 84  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 143

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 144 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 190

[Close]
BLAST of Lsi09G016970 vs. ExPASy TrEMBL
Match: A0A0A0KFM2 (Glycine--tRNA ligase OS=Cucumis sativus OX=3659 GN=Csa_6G106190 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 83  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 142

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 143 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 189

[Close]
BLAST of Lsi09G016970 vs. ExPASy TrEMBL
Match: A0A6J1EYL5 (Glycine--tRNA ligase OS=Cucurbita moschata OX=3662 GN=LOC111439724 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 84  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 143

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 144 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 190

[Close]
BLAST of Lsi09G016970 vs. ExPASy TrEMBL
Match: A0A1S3CB07 (Glycine--tRNA ligase OS=Cucumis melo OX=3656 GN=LOC103498820 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 83  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 142

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 143 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 189

[Close]
BLAST of Lsi09G016970 vs. ExPASy TrEMBL
Match: A0A660KQ62 (Glycine--tRNA ligase OS=Carpinus fangiana OX=176857 GN=FH972_011065 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.4e-57
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCA+MQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 86  EYWASVGCALMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 145

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESPASS 129
           QRHTQFQVILKPDPGNSQDLFI+SLSALGIDV+AHDIRFVEDNWESPA S
Sbjct: 146 QRHTQFQVILKPDPGNSQDLFIRSLSALGIDVSAHDIRFVEDNWESPAGS 195

[Close]
BLAST of Lsi09G016970 vs. NCBI nr
Match: KAG7013827.1 (Glycine--tRNA ligase, chloroplastic/mitochondrial 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 102 EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 161

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 162 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 208

[Close]
BLAST of Lsi09G016970 vs. NCBI nr
Match: XP_023520987.1 (glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 84  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 143

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 144 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 190

[Close]
BLAST of Lsi09G016970 vs. NCBI nr
Match: XP_038874261.1 (glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 83  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 142

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 143 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 189

[Close]
BLAST of Lsi09G016970 vs. NCBI nr
Match: XP_022973888.1 (glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 84  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 143

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 144 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 190

[Close]
BLAST of Lsi09G016970 vs. NCBI nr
Match: XP_008459797.1 (PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 83  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 142

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP
Sbjct: 143 QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 189

[Close]
BLAST of Lsi09G016970 vs. TAIR 10
Match: AT3G48110.1 (glycine-tRNA ligases )

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-57
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 19  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 78
           EYWASVGCAVMQ SNTEVGAGTMNP TFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL
Sbjct: 82  EYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRL 141

Query: 79  QRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVEDNWESP 126
           QRHTQFQVILKPDPGNSQ LFI SLSALGIDV AHDIRFVEDNWESP
Sbjct: 142 QRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188

The following BLAST results are available for this feature:
BLAST of Lsi09G016970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L7855.7e-5695.33Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana OX=3... [more]
B8IZ953.6e-4273.58Glycine--tRNA ligase alpha subunit OS=Desulfovibrio desulfuricans (strain ATCC 2... [more]
B8DPG08.0e-4272.64Glycine--tRNA ligase alpha subunit OS=Desulfovibrio vulgaris (strain DSM 19637 /... [more]
Q72AU21.4e-4173.58Glycine--tRNA ligase alpha subunit OS=Desulfovibrio vulgaris (strain ATCC 29579 ... [more]
A1VCW81.4e-4173.58Glycine--tRNA ligase alpha subunit OS=Desulfovibrio vulgaris subsp. vulgaris (st... [more]
BLAST of Lsi09G016970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IEH34.1e-57100.00Glycine--tRNA ligase OS=Cucurbita maxima OX=3661 GN=LOC111472479 PE=3 SV=1[more]
A0A0A0KFM24.1e-57100.00Glycine--tRNA ligase OS=Cucumis sativus OX=3659 GN=Csa_6G106190 PE=3 SV=1[more]
A0A6J1EYL54.1e-57100.00Glycine--tRNA ligase OS=Cucurbita moschata OX=3662 GN=LOC111439724 PE=3 SV=1[more]
A0A1S3CB074.1e-57100.00Glycine--tRNA ligase OS=Cucumis melo OX=3656 GN=LOC103498820 PE=3 SV=1[more]
A0A660KQ625.4e-5796.36Glycine--tRNA ligase OS=Carpinus fangiana OX=176857 GN=FH972_011065 PE=3 SV=1[more]
BLAST of Lsi09G016970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013827.18.5e-57100.00Glycine--tRNA ligase, chloroplastic/mitochondrial 2, partial [Cucurbita argyrosp... [more]
XP_023520987.18.5e-57100.00glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita pepo s... [more]
XP_038874261.18.5e-57100.00glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Benincasa hispid... [more]
XP_022973888.18.5e-57100.00glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita maxima... [more]
XP_008459797.18.5e-57100.00PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucum... [more]
BLAST of Lsi09G016970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G48110.14.1e-5795.33glycine-tRNA ligases [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002310Glycine-tRNA ligase, alpha subunitPRINTSPR01044TRNASYNTHGAcoord: 114..138
score: 47.64
coord: 62..77
score: 78.98
coord: 83..103
score: 60.61
IPR002310Glycine-tRNA ligase, alpha subunitPFAMPF02091tRNA-synt_2ecoord: 19..133
e-value: 4.3E-55
score: 186.9
NoneNo IPR availableGENE3D3.30.930.10Bira Bifunctional Protein; Domain 2coord: 13..142
e-value: 6.2E-56
score: 190.9
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 19..125
IPR006194Glycine-tRNA synthetase, heterodimericPROSITEPS50861AA_TRNA_LIGASE_II_GLYABcoord: 19..125
score: 39.107693

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016970.1Lsi09G016970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006426 glycyl-tRNA aminoacylation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0004820 glycine-tRNA ligase activity
molecular_function GO:0000166 nucleotide binding