Lsi09G016930 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAGTGTGACCTCTTACTTTTCAGGCATAAAGTAGTGAGTTTTCTACTTTAGATAATGTGCAAGTTGTTTGTTTTAGCGACAAATTAATGTTTGTCTTTTCGGCACTCATCCCACTAAACGCAAACCCATCACCAGCCACTAGTACCACTAAAAATTTTCTGTGAAGTCAATTAATGCAGTAAGGCATATGCCTTCCACGTTGCAATAATGTAAGCATGGAGGAGCGTGCCTCTCGTTCAACATAGGTATAGGCCACTTCTTCTGTTCCGACGTAGTCTAAATCTCGCAATTTTATTTCCCCGAGCCTTATATTTTGAAAACGTTGATGTCCTGCCAGCACATAGGATGCTCTTTTTGGGCTTATTCTGAACCTACCTAAAGAAATTTAATAGAATTACTCTTTCTTTAAGAATATTATATCACATGTGGTTGAAATTTCCCTTGATGACCTATTAGAGTTGGTAGAGGTGACTTACTTGGTGAGCCTATGCTCAGGTTGACCGGAAAAATTTGAATACGATAATATTTTTCATTATTTAGAACCATTATTAGAGGAAAATAAGTTTCTTATAAAATTGTGCTTTGAAGAATTTCATTTGGCCTTTATCTTCCAATGTTCTTCATCTTCATAAAAAATGCTAACCTTAAATTGCAATGAAATCATTCTTCAAGTTGATTACACTAGATTTCTAAAGAATGGATTTAATTCGTTAAAAGTACTATTTATTCCAGATGATAGAATTTGCTTCCAAATACAGTTTTTTATAAAGTTATGGTTCTAACTTTTAATTTTGCCCATCAGAATGAAGGAGCTCTATTTTTCTTGCCCTACAACATTGTTTTAGCCCTTCATAACATTGAAATGTTTTCTGTACGTTGGTGGAATATAATTTTGATTAACGGGTCTATGCAAATTAGGCATTTGGTTTTCAAAAATTCCTGAAATTTTGAAAATAGACCTTGTAAAAGGTTAAATGACTGATGTTTTTTTTCCCACTTGTTGTTAGTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA ATGGCTAGTTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA ATGGCTAGTTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA MASSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK Homology
BLAST of Lsi09G016930 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 9.4e-10 Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 8.8e-08 Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07 Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 5.9e-04 Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy TrEMBL
Match: A0A6J1F3H7 (RGG repeats nuclear RNA binding protein A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy TrEMBL
Match: A0A6J1EYL1 (RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy TrEMBL
Match: A0A5A7TA33 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002670 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22 Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy TrEMBL
Match: A0A1S3CBH1 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498821 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22 Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. ExPASy TrEMBL
Match: A0A0A0K9Z4 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106180 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. NCBI nr
Match: XP_023520985.1 (RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. NCBI nr
Match: XP_022933028.1 (RGG repeats nuclear RNA binding protein A-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. NCBI nr
Match: XP_023520984.1 (RGG repeats nuclear RNA binding protein A-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. NCBI nr
Match: KAG7011066.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. NCBI nr
Match: XP_022933029.1 (RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Lsi09G016930 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family ) HSP 1 Score: 57.0 bits (136), Expect = 6.3e-09 Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Lsi09G016930 vs. TAIR 10
Match: AT4G16830.2 (Hyaluronan / mRNA binding family ) HSP 1 Score: 57.0 bits (136), Expect = 6.3e-09 Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Lsi09G016930 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family ) HSP 1 Score: 57.0 bits (136), Expect = 6.3e-09 Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Lsi09G016930 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family ) HSP 1 Score: 53.5 bits (127), Expect = 6.9e-08 Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0
BLAST of Lsi09G016930 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family ) HSP 1 Score: 44.3 bits (103), Expect = 4.2e-05 Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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