Lsi09G016480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G016480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NAC domain-containing protein 43
Location	chr09: 24797649 .. 24797972 (-)
RNA-Seq Expression	Lsi09G016480
Synteny	Lsi09G016480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTTCTGGCTACCAATTGGAGTCCTCTTCCCTCTCTGCCGCCACGGCTCCTCACAACTGGGCGGCGTTCGACCGACTAGTGGCGTCGCAGCTCAATGGCCAAATCGAAGTATCCAACATGATTTATTACAGTGATCAATTGCCAACTCCAACACTACGCGGAACGACATCGTTTTCATCTAAATCTTCATCTTCTTCTTACAACGCCGCCGCCATAGCCGCCTCTCAAGATTACAACAACGTCGACACAGAGCTATGGAGCTTTGCCAGGTTGTCGTCTACTGACCCATTATGCCACGTGTCCGACACTCCCATATAA

mRNA sequence

ATGATGATTTCTGGCTACCAATTGGAGTCCTCTTCCCTCTCTGCCGCCACGGCTCCTCACAACTGGGCGGCGTTCGACCGACTAGTGGCGTCGCAGCTCAATGGCCAAATCGAAGTATCCAACATGATTTATTACAGTGATCAATTGCCAACTCCAACACTACGCGGAACGACATCGTTTTCATCTAAATCTTCATCTTCTTCTTACAACGCCGCCGCCATAGCCGCCTCTCAAGATTACAACAACGTCGACACAGAGCTATGGAGCTTTGCCAGGTTGTCGTCTACTGACCCATTATGCCACGTGTCCGACACTCCCATATAA

Coding sequence (CDS)

ATGATGATTTCTGGCTACCAATTGGAGTCCTCTTCCCTCTCTGCCGCCACGGCTCCTCACAACTGGGCGGCGTTCGACCGACTAGTGGCGTCGCAGCTCAATGGCCAAATCGAAGTATCCAACATGATTTATTACAGTGATCAATTGCCAACTCCAACACTACGCGGAACGACATCGTTTTCATCTAAATCTTCATCTTCTTCTTACAACGCCGCCGCCATAGCCGCCTCTCAAGATTACAACAACGTCGACACAGAGCTATGGAGCTTTGCCAGGTTGTCGTCTACTGACCCATTATGCCACGTGTCCGACACTCCCATATAA

Protein sequence

MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPTPTLRGTTSFSSKSSSSSYNAAAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI

Homology

[Close]

BLAST of Lsi09G016480 vs. ExPASy TrEMBL
Match: A0A5D3DM70 (NAC domain-containing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002970 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+S  +APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLRGTTS
Sbjct: 297 MIVSGYQLDSSSVS--SAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRGTTS 356

Query: 61  FSSKSSSSSYN---AAAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYN   AAA  A+QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 357 FSSKSSSSSYNAVVAAAATATQDYNNVDTELWSFARLSSTDPLCHVSDTTI 405

[Close]

BLAST of Lsi09G016480 vs. ExPASy TrEMBL
Match: A0A1S3CC46 (NAC domain-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103498792 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+S  +APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLRGTTS
Sbjct: 297 MIVSGYQLDSSSVS--SAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRGTTS 356

Query: 61  FSSKSSSSSYN---AAAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYN   AAA  A+QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 357 FSSKSSSSSYNAVVAAAATATQDYNNVDTELWSFARLSSTDPLCHVSDTTI 405

[Close]

BLAST of Lsi09G016480 vs. ExPASy TrEMBL
Match: A0A6J1H4K5 (NAC domain-containing protein 43 OS=Cucurbita moschata OX=3662 GN=LOC111459983 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.0e-40
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPT-PTLRGTTS 60
           ++ISGYQLESSS +AATAPHNWAAFDRLVASQLNGQIEVSNMIYY+DQLPT PTLRGTTS
Sbjct: 285 ILISGYQLESSSAAAATAPHNWAAFDRLVASQLNGQIEVSNMIYYNDQLPTPPTLRGTTS 344

Query: 61  FSSKSSSSSYNAAAIAASQDYNNVDTELWSFARL-----SSTDPLCHVSDTPI 108
           FSSKSSSSSY A   AA QDYNNVDTELWSFA+L     SS+DPLCHVS+TPI
Sbjct: 345 FSSKSSSSSYTA---AAGQDYNNVDTELWSFAKLSSSLSSSSDPLCHVSNTPI 394

[Close]

BLAST of Lsi09G016480 vs. ExPASy TrEMBL
Match: A0A0A0KDU5 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G107870 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39
Identity = 92/110 (83.64%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+  ++APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLR TTS
Sbjct: 298 MIVSGYQLDSSSV-VSSAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRATTS 357

Query: 61  FSSKSSSSSYNA--AAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYNA  AA  A QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 358 FSSKSSSSSYNAVVAAPTAPQDYNNVDTELWSFARLSSTDPLCHVSDTTI 406

[Close]

BLAST of Lsi09G016480 vs. ExPASy TrEMBL
Match: A0A6J1KW93 (NAC domain-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111499272 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.6e-38
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MMISGYQLESSS-LSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPT-PTLRGTT 60
           ++I GYQLESSS  +AA+APHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPT PTLRGTT
Sbjct: 284 ILIPGYQLESSSAAAAASAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPTPPTLRGTT 343

Query: 61  SFSSKSSSSSYNAAAIAASQDYNNVDTELWSFARL-----SSTDPLCHVSDTPI 108
           SFSSKSSSSSY A   AA QDYNNVDTELWSFA+L     SS+DPLCHVS+TPI
Sbjct: 344 SFSSKSSSSSYTA---AAGQDYNNVDTELWSFAKLSSSLSSSSDPLCHVSNTPI 394

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: XP_038875770.1 (NAC domain-containing protein 43 [Benincasa hispida])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 4   SGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPTPTLRGTTSFSSK 63
           SGYQLE SS SA  APHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPTPTLRGT SFSSK
Sbjct: 302 SGYQLEPSSFSA--APHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPTPTLRGTASFSSK 361

Query: 64  SSSSSYNA--AAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           SSSSSYNA  AA A +QDYNNVDTELWSFARLSS+DPLCHVS+TPI
Sbjct: 362 SSSSSYNAANAAAAVAQDYNNVDTELWSFARLSSSDPLCHVSNTPI 405

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: XP_008459751.1 (PREDICTED: NAC domain-containing protein 43 [Cucumis melo] >KAA0039760.1 NAC domain-containing protein 43 [Cucumis melo var. makuwa] >TYK24736.1 NAC domain-containing protein 43 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 6.5e-40
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+S  +APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLRGTTS
Sbjct: 297 MIVSGYQLDSSSVS--SAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRGTTS 356

Query: 61  FSSKSSSSSYN---AAAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYN   AAA  A+QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 357 FSSKSSSSSYNAVVAAAATATQDYNNVDTELWSFARLSSTDPLCHVSDTTI 405

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: XP_022958830.1 (NAC domain-containing protein 43 [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPT-PTLRGTTS 60
           ++ISGYQLESSS +AATAPHNWAAFDRLVASQLNGQIEVSNMIYY+DQLPT PTLRGTTS
Sbjct: 285 ILISGYQLESSSAAAATAPHNWAAFDRLVASQLNGQIEVSNMIYYNDQLPTPPTLRGTTS 344

Query: 61  FSSKSSSSSYNAAAIAASQDYNNVDTELWSFARL-----SSTDPLCHVSDTPI 108
           FSSKSSSSSY A   AA QDYNNVDTELWSFA+L     SS+DPLCHVS+TPI
Sbjct: 345 FSSKSSSSSYTA---AAGQDYNNVDTELWSFAKLSSSLSSSSDPLCHVSNTPI 394

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: XP_011656855.1 (NAC domain-containing protein 43 [Cucumis sativus] >KGN46537.1 hypothetical protein Csa_004993 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 92/110 (83.64%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+  ++APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLR TTS
Sbjct: 298 MIVSGYQLDSSSV-VSSAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRATTS 357

Query: 61  FSSKSSSSSYNA--AAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYNA  AA  A QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 358 FSSKSSSSSYNAVVAAPTAPQDYNNVDTELWSFARLSSTDPLCHVSDTTI 406

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: KAG6575247.1 (NAC domain-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 3.6e-38
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MMISGYQLESSS-LSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPT-PTLRGTT 60
           ++ISGYQLESSS  +AATAPHNWAAFDRLVASQLNGQIEVSNMIYY+DQLPT PTLRGTT
Sbjct: 287 ILISGYQLESSSAAAAATAPHNWAAFDRLVASQLNGQIEVSNMIYYNDQLPTPPTLRGTT 346

Query: 61  SFSSKSSSSSYNAAAIAASQDYNNVDTELWSFARL-----SSTDPLCHVSDTPI 108
           SFSSKSSSSSY A   AA QDYNNVDTELWSFA+L     SS+DPLCHVS+TPI
Sbjct: 347 SFSSKSSSSSYTA---AAGQDYNNVDTELWSFAKLSSSLSSSSDPLCHVSNTPI 397

[Close]

BLAST of Lsi09G016480 vs. TAIR 10
Match: AT2G46770.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 21  NWAAFDRLVASQLNGQIE-----VSNMIYYSDQLPTPTLRGTTSFSSKSSSSSYNAAAIA 80
           +WAA DRLVASQLNG        V+      D L  P++R  + + S + S+SY+A    
Sbjct: 277 SWAALDRLVASQLNGPTSYSITAVNESHVGHDHLALPSVR--SPYPSLNRSASYHA---G 336

Query: 81  ASQDYNNVDTELW---SFARLSSTDPLCHVSD 105
            +Q+Y   + ELW   + +  SS  P CHVS+
Sbjct: 337 LTQEY-TPEMELWNTTTSSLSSSPGPFCHVSN 362

The following BLAST results are available for this feature:

BLAST of Lsi09G016480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G016480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM70	3.1e-40	84.68	NAC domain-containing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CC46	3.1e-40	84.68	NAC domain-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103498792 PE=4 SV...	[more]
A0A6J1H4K5	7.0e-40	83.19	NAC domain-containing protein 43 OS=Cucurbita moschata OX=3662 GN=LOC111459983 P...	[more]
A0A0A0KDU5	5.9e-39	83.64	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G107870 PE=4 SV...	[more]
A0A6J1KW93	8.6e-38	81.58	NAC domain-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111499272 PE=...	[more]

BLAST of Lsi09G016480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875770.1	1.3e-40	88.68	NAC domain-containing protein 43 [Benincasa hispida]	[more]
XP_008459751.1	6.5e-40	84.68	PREDICTED: NAC domain-containing protein 43 [Cucumis melo] >KAA0039760.1 NAC dom...	[more]
XP_022958830.1	1.4e-39	83.19	NAC domain-containing protein 43 [Cucurbita moschata]	[more]
XP_011656855.1	1.2e-38	83.64	NAC domain-containing protein 43 [Cucumis sativus] >KGN46537.1 hypothetical prot...	[more]
KAG6575247.1	3.6e-38	82.46	NAC domain-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Lsi09G016480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46770.1	2.7e-04	38.04	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016480.1	Lsi09G016480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding