Lsi09G016450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G016450
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr09: 24762655 .. 24763583 (-)
RNA-Seq Expression	Lsi09G016450
Synteny	Lsi09G016450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCTCTCTTCAACAACCCTTTCACCACATCTCCCTTCAATTTTACAATTCAAGTAAGTATATATTCATTCAATTCTTGTCAAGATAACTACAAGATTAATTAATATTATTGTTTCTTGCAAATTCTTTTAATTAATTACACTTTCATTCTTTTTCTTTTTTCCATTTTTAGGGATTGGTCAACAACTCTCTCGTGATTTGCAATTGCAACCTTCAAGAGAGGAAGATGTAGGCAAAATTGACTATGGAATCTTTGCCTCAATTGATTCACAAGTGTTTAAACGAATTGCAACAGAGTTAGATCATGATTTCAATGGTAATAAATAAATATATATATATAATATATAATTTGAAAGAAAATTTTCTAAAATCTTGTGGTAATTTAATTTGTCTCAGCATTGATTACTGTAACGAATTCACAAGTGAAATTCACTTTTGAAGGTAGAGAGATAAGTACTCTTCACAAAGAGGTATATATAATCAATTCTTTTGCTTTCATTATTAATAATAAATACATTTGATGATTAGTGGTTGATAATTATGTTTTGTGCAGAGAAAAGAATGCATAATTGGAGGGCTTTCAGAGGGAGAAGAAGCTCGATTCTTAGTGTACTTAGAGCCCACAATTTTTTTTCGTGGTGTGGTTTATCAGTCAAAAAGGATATGGATATTCAAGTCTCCTAATTCCTCTAGTATAATTGTTGCTCCTATTGAATTGTATGCTCAATTTTGCGTCTATTTTTCCCAGTGAGGAAAATTCCAAGAGATAAAAATGTTTTAGATATGTTGATATCATTTTTTCTTCATCATAATAAAATTGAAATATCAACTATAACCATCTTTACACAATTTTTTCTCATAATATATTGTGTATCTTATGTATCTAGGTATTCTCAAATTGATTTTTATTTACAAATTATATAA

mRNA sequence

ATGACACTCTCTCTTCAACAACCCTTTCACCACATCTCCCTTCAATTTTACAATTCAAGGATTGGTCAACAACTCTCTCGTGATTTGCAATTGCAACCTTCAAGAGAGGAAGATGTAGGCAAAATTGACTATGGAATCTTTGCCTCAATTGATTCACAAGTGTTTAAACGAATTGCAACAGAGTTAGATCATGATTTCAATGCATTGATTACTGTAACGAATTCACAAGTGAAATTCACTTTTGAAGGTAGAGAGATAAGTACTCTTCACAAAGAGAGAAAAGAATGCATAATTGGAGGGCTTTCAGAGGGAGAAGAAGCTCGATTCTTAGTGTACTTAGAGCCCACAATTTTTTTTCGTGGTGTGGTTTATCAGTCAAAAAGGATATGGATATTCAAGTCTCCTAATTCCTCTAGTATAATTGTTGCTCCTATTGAATTGTATGCTCAATTTTGCGTCTATTTTTCCCAGTATTCTCAAATTGATTTTTATTTACAAATTATATAA

Coding sequence (CDS)

ATGACACTCTCTCTTCAACAACCCTTTCACCACATCTCCCTTCAATTTTACAATTCAAGGATTGGTCAACAACTCTCTCGTGATTTGCAATTGCAACCTTCAAGAGAGGAAGATGTAGGCAAAATTGACTATGGAATCTTTGCCTCAATTGATTCACAAGTGTTTAAACGAATTGCAACAGAGTTAGATCATGATTTCAATGCATTGATTACTGTAACGAATTCACAAGTGAAATTCACTTTTGAAGGTAGAGAGATAAGTACTCTTCACAAAGAGAGAAAAGAATGCATAATTGGAGGGCTTTCAGAGGGAGAAGAAGCTCGATTCTTAGTGTACTTAGAGCCCACAATTTTTTTTCGTGGTGTGGTTTATCAGTCAAAAAGGATATGGATATTCAAGTCTCCTAATTCCTCTAGTATAATTGTTGCTCCTATTGAATTGTATGCTCAATTTTGCGTCTATTTTTCCCAGTATTCTCAAATTGATTTTTATTTACAAATTATATAA

Protein sequence

MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQIDFYLQII

Homology

[Close]

BLAST of Lsi09G016450 vs. ExPASy TrEMBL
Match: A0A6J1HM25 (uncharacterized protein LOC111464210 OS=Cucurbita moschata OX=3662 GN=LOC111464210 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.6e-46
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           +TLSL+   + + LQF+NSRIG++  R L L PSRE+DVG+IDYGIF SIDS+VF+RIAT
Sbjct: 12  ITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVSIDSEVFERIAT 71

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           +L +D NAL+T+TNSQVKF+ E +EIS L +ER+EC+IGGLS  +E RF V L P IFFR
Sbjct: 72  DL-NDSNALVTLTNSQVKFSVEAKEIS-LVEERRECMIGGLSRSQETRFFVSLNPIIFFR 131

Query: 121 GVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFS 157
            + +QSKRIW+FKS  + SII+API LYAQFCVYFS
Sbjct: 132 DLAHQSKRIWLFKSAKAYSIIIAPIGLYAQFCVYFS 165

[Close]

BLAST of Lsi09G016450 vs. ExPASy TrEMBL
Match: A0A6J1KGC4 (uncharacterized protein LOC111494875 OS=Cucurbita maxima OX=3661 GN=LOC111494875 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45
Identity = 99/157 (63.06%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           +TLSL+   + + LQF+NSRIG++  R L L PSRE+DVG+IDYGIF SIDS+VF+RIAT
Sbjct: 12  ITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVSIDSEVFERIAT 71

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           +L +D NAL+T+TNSQVKF+ E +EIS L +ER+EC+IGGLS  +E RF V L P IFFR
Sbjct: 72  DL-NDSNALVTLTNSQVKFSVEAKEIS-LVEERRECMIGGLSRSQEIRFFVSLNPIIFFR 131

Query: 121 GVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQ 158
            +  +SKRIW+FKS  + SII+API LYAQFCVYFS+
Sbjct: 132 DLARRSKRIWLFKSAKAYSIIIAPIGLYAQFCVYFSR 166

[Close]

BLAST of Lsi09G016450 vs. ExPASy TrEMBL
Match: A0A0A0KCY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-41
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 6   QQPFHHISLQFYNSRIGQQ---LSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATEL 65
           QQP + I LQF N R+      L     L PSREEDVG+IDYGIF SIDS V + IATEL
Sbjct: 8   QQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIATEL 67

Query: 66  DHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGV 125
           D D++AL+T+TNS+VKF+   +EIS L+KE  ECIIGG+++ EE+RF VYL P I FR +
Sbjct: 68  D-DYDALVTLTNSEVKFSVNDKEIS-LYKEVDECIIGGVADEEESRFFVYLNPKILFRDL 127

Query: 126 VYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
             +S+RIW+FKSPNS SIIVAPI LYAQFCVYF Q  +
Sbjct: 128 ANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEE 163

[Close]

BLAST of Lsi09G016450 vs. ExPASy TrEMBL
Match: A0A1S3C8E9 (uncharacterized protein LOC103498005 OS=Cucumis melo OX=3656 GN=LOC103498005 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-41
Identity = 99/165 (60.00%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 1   MTLSL--QQPFHHISLQFYNSRI---GQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVF 60
           MTLSL  QQP   I+LQF N R+    + L     L PSREEDVG+IDYGIF SI+S VF
Sbjct: 90  MTLSLHPQQPLIQIALQFRNPRVVDDQEALYHAFPLSPSREEDVGEIDYGIFFSIESLVF 149

Query: 61  KRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEP 120
           + IA ELD DF+AL+T+TNS+VKF+   ++I  L+KER ECIIGG+  GEE+RF VYL P
Sbjct: 150 RFIAIELD-DFDALVTLTNSEVKFSVNDKDI-ILYKERDECIIGGVEIGEESRFFVYLNP 209

Query: 121 TIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
            + FR +  QS RIW+FKSP S SI VAPI LYAQFCVYF Q  +
Sbjct: 210 KVLFRDLAEQSARIWMFKSPRSYSITVAPIGLYAQFCVYFPQIEE 252

[Close]

BLAST of Lsi09G016450 vs. ExPASy TrEMBL
Match: A0A6J1KN57 (uncharacterized protein LOC111494871 OS=Cucurbita maxima OX=3661 GN=LOC111494871 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26
Identity = 67/157 (42.68%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLS--RDLQLQPSREEDVGKIDYGIFASIDSQVFKRI 60
           M   L +  + + L+F +S+I  +++  R+L L P     + ++DYG F SIDS  F+ I
Sbjct: 90  MLFFLIERSNRLYLRFDHSKIEPKVTSFRELTLNPPEMNHLARLDYGTFVSIDSPTFRSI 149

Query: 61  ATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIF 120
            TEL  D+ A +T+T+SQVKF+   +EI  L K +K+CIIG ++E +E +F++ L+PT+F
Sbjct: 150 VTELRADY-AHVTLTDSQVKFSNADKEI-VLTKRKKQCIIGDVTEKDEIKFVIALQPTMF 209

Query: 121 FRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYF 156
           F  + +QS R+W+FKS NSSS ++ P+ +Y QF VYF
Sbjct: 210 FHDLSHQSARVWLFKSSNSSSAMIVPVGMYTQFWVYF 244

[Close]

BLAST of Lsi09G016450 vs. NCBI nr
Match: XP_022964074.1 (uncharacterized protein LOC111464210 [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 3.3e-46
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           +TLSL+   + + LQF+NSRIG++  R L L PSRE+DVG+IDYGIF SIDS+VF+RIAT
Sbjct: 12  ITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVSIDSEVFERIAT 71

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           +L +D NAL+T+TNSQVKF+ E +EIS L +ER+EC+IGGLS  +E RF V L P IFFR
Sbjct: 72  DL-NDSNALVTLTNSQVKFSVEAKEIS-LVEERRECMIGGLSRSQETRFFVSLNPIIFFR 131

Query: 121 GVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFS 157
            + +QSKRIW+FKS  + SII+API LYAQFCVYFS
Sbjct: 132 DLAHQSKRIWLFKSAKAYSIIIAPIGLYAQFCVYFS 165

[Close]

BLAST of Lsi09G016450 vs. NCBI nr
Match: XP_023514485.1 (uncharacterized protein LOC111778745 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 101/156 (64.74%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           +TLSL+   + + LQF+NSRIG++  R L L PSRE+DVG+IDYGIF SIDS+VF+RIAT
Sbjct: 12  ITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVSIDSEVFERIAT 71

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           +L +D  AL+T+TNSQVKFT E +EIS L KER+EC+IGGLS  +E RF V L P IFFR
Sbjct: 72  DL-NDSTALVTLTNSQVKFTMEAKEIS-LVKERRECMIGGLSRSQETRFFVSLSPIIFFR 131

Query: 121 GVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFS 157
            +  QSKRIW+FKS  + SII+API LYAQFCVYFS
Sbjct: 132 DLARQSKRIWLFKSAKAYSIIIAPIGLYAQFCVYFS 165

[Close]

BLAST of Lsi09G016450 vs. NCBI nr
Match: XP_023000631.1 (uncharacterized protein LOC111494875 [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-45
Identity = 99/157 (63.06%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           +TLSL+   + + LQF+NSRIG++  R L L PSRE+DVG+IDYGIF SIDS+VF+RIAT
Sbjct: 12  ITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVSIDSEVFERIAT 71

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           +L +D NAL+T+TNSQVKF+ E +EIS L +ER+EC+IGGLS  +E RF V L P IFFR
Sbjct: 72  DL-NDSNALVTLTNSQVKFSVEAKEIS-LVEERRECMIGGLSRSQEIRFFVSLNPIIFFR 131

Query: 121 GVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQ 158
            +  +SKRIW+FKS  + SII+API LYAQFCVYFS+
Sbjct: 132 DLARRSKRIWLFKSAKAYSIIIAPIGLYAQFCVYFSR 166

[Close]

BLAST of Lsi09G016450 vs. NCBI nr
Match: XP_008458677.1 (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 7.1e-41
Identity = 99/165 (60.00%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 1   MTLSL--QQPFHHISLQFYNSRI---GQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVF 60
           MTLSL  QQP   I+LQF N R+    + L     L PSREEDVG+IDYGIF SI+S VF
Sbjct: 90  MTLSLHPQQPLIQIALQFRNPRVVDDQEALYHAFPLSPSREEDVGEIDYGIFFSIESLVF 149

Query: 61  KRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEP 120
           + IA ELD DF+AL+T+TNS+VKF+   ++I  L+KER ECIIGG+  GEE+RF VYL P
Sbjct: 150 RFIAIELD-DFDALVTLTNSEVKFSVNDKDI-ILYKERDECIIGGVEIGEESRFFVYLNP 209

Query: 121 TIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
            + FR +  QS RIW+FKSP S SI VAPI LYAQFCVYF Q  +
Sbjct: 210 KVLFRDLAEQSARIWMFKSPRSYSITVAPIGLYAQFCVYFPQIEE 252

[Close]

BLAST of Lsi09G016450 vs. NCBI nr
Match: XP_031744051.1 (uncharacterized protein LOC116404769 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 7.1e-41
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 6   QQPFHHISLQFYNSRIGQQ---LSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATEL 65
           QQP + I LQF N R+      L     L PSREEDVG+IDYGIF SIDS V + IATEL
Sbjct: 97  QQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIATEL 156

Query: 66  DHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGV 125
           D D++AL+T+TNS+VKF+   +EIS L+KE  ECIIGG+++ EE+RF VYL P I FR +
Sbjct: 157 D-DYDALVTLTNSEVKFSVNDKEIS-LYKEVDECIIGGVADEEESRFFVYLNPKILFRDL 216

Query: 126 VYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
             +S+RIW+FKSPNS SIIVAPI LYAQFCVYF Q  +
Sbjct: 217 ANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEE 252

The following BLAST results are available for this feature:

BLAST of Lsi09G016450 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G016450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HM25	1.6e-46	64.10	uncharacterized protein LOC111464210 OS=Cucurbita moschata OX=3662 GN=LOC1114642...	[more]
A0A6J1KGC4	1.3e-45	63.06	uncharacterized protein LOC111494875 OS=Cucurbita maxima OX=3661 GN=LOC111494875...	[more]
A0A0A0KCY3	3.4e-41	60.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002350 PE=4 SV=1	[more]
A0A1S3C8E9	3.4e-41	60.00	uncharacterized protein LOC103498005 OS=Cucumis melo OX=3656 GN=LOC103498005 PE=...	[more]
A0A6J1KN57	3.1e-26	42.68	uncharacterized protein LOC111494871 OS=Cucurbita maxima OX=3661 GN=LOC111494871...	[more]

BLAST of Lsi09G016450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964074.1	3.3e-46	64.10	uncharacterized protein LOC111464210 [Cucurbita moschata]	[more]
XP_023514485.1	4.3e-46	64.74	uncharacterized protein LOC111778745 [Cucurbita pepo subsp. pepo]	[more]
XP_023000631.1	2.8e-45	63.06	uncharacterized protein LOC111494875 [Cucurbita maxima]	[more]
XP_008458677.1	7.1e-41	60.00	PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo]	[more]
XP_031744051.1	7.1e-41	60.76	uncharacterized protein LOC116404769 [Cucumis sativus]	[more]

BLAST of Lsi09G016450 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..166 e-value: 2.3E-5 score: 26.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016450.1	Lsi09G016450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane