Lsi09G016430 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G016430
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr09: 24738313 .. 24739360 (-)
RNA-Seq ExpressionLsi09G016430
SyntenyLsi09G016430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTCAGTTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGATCACCACATTGACAATGGTCGAACACATGGTGGATGCGACATTTTCACCGGAAATGTTTTGCCTAATTGCCGATTCATATATTTTCACTGACACCGCCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAACAAGCTTCAACGTTCTTGGTTTCTCCTCAACAAGTCTTTCTCTCTTGCCCTAAAATTACAACATTCTGGTTACACTTCTTTGACCTTCTCTGTCCCTAACTCTGAACGTGCCCAACTCAATTTCCAAGGCCCAAATGGTCATTTTCTTTTATTTCCTTTAATTCCCCTCCTGCCCTAATCTTGGGATTCTTCAATAAAATCTTTTTTTCATTTTTTTCATTTCTTTTTTAGGCCTTCTTCGCGAAATTCCTCTCGAATTGGGTTTTACCGACGATCTGATGTACATCGGCAAATTTGATCTCTCTGTTTTTGTTACCATGGATTCTCAACAATTCTCTCGCCTTGTCGCTGGTTATCATAGGTTTGATTACGGTAATAATCTCTAATTATTAAATTTATGTTCAAATATTATTATCATCCGTATATTTTGAAGTTTATTTCATTTATATATATAATTTAATTTCACTTTTTAATTGTTTATTATTATTCACAGTTCATGTTACTGTAACGAGCTCACAAATGATATTCATTTTCGCAATTATGGAACAGACAGTTCTTACAACACGTGTATGTATATTAATTTTGAGGGTATTAATTAATTAATATATATATATGTGTGTGTGTAGTTTAATTATTGTTACATGTAGAATGGAGGATGTATAATTGGAGGTCTTAAAGCACCAAATCAAATTCAATTCACAATCTCTTTAAGACCAGCAAAAGCTTTTTATGATATGGTAAGACAAACGAAGAGGATTTGGATATTCAAGTTATGTAATTCAACCAAAGGTTTAATTACTGCTCCTCTTGGATTGAATGGTCGATTTGTCGCTTTTCTTGTGAAGACATGA

mRNA sequence

ATGCCGTTCAGTTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGATCACCACATTGACAATGGTCGAACACATGGTGGATGCGACATTTTCACCGGAAATGTTTTGCCTAATTGCCGATTCATATATTTTCACTGACACCGCCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAACAAGCTTCAACGTTCTTGGTTTCTCCTCAACAAGTCTTTCTCTCTTGCCCTAAAATTACAACATTCTGGTTACACTTCTTTGACCTTCTCTGTCCCTAACTCTGAACGTGCCCAACTCAATTTCCAAGGCCCAAATGGCCTTCTTCGCGAAATTCCTCTCGAATTGGGTTTTACCGACGATCTGATGTACATCGGCAAATTTGATCTCTCTGTTTTTGTTACCATGGATTCTCAACAATTCTCTCGCCTTGTCGCTGGTTATCATAGGTTTGATTACGTTCATGTTACTGTAACGAGCTCACAAATGATATTCATTTTCGCAATTATGGAACAGACAGTTCTTACAACACGTAATGGAGGATGTATAATTGGAGGTCTTAAAGCACCAAATCAAATTCAATTCACAATCTCTTTAAGACCAGCAAAAGCTTTTTATGATATGGTAAGACAAACGAAGAGGATTTGGATATTCAAGTTATGTAATTCAACCAAAGGTTTAATTACTGCTCCTCTTGGATTGAATGGTCGATTTGTCGCTTTTCTTGTGAAGACATGA

Coding sequence (CDS)

ATGCCGTTCAGTTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGATCACCACATTGACAATGGTCGAACACATGGTGGATGCGACATTTTCACCGGAAATGTTTTGCCTAATTGCCGATTCATATATTTTCACTGACACCGCCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAACAAGCTTCAACGTTCTTGGTTTCTCCTCAACAAGTCTTTCTCTCTTGCCCTAAAATTACAACATTCTGGTTACACTTCTTTGACCTTCTCTGTCCCTAACTCTGAACGTGCCCAACTCAATTTCCAAGGCCCAAATGGCCTTCTTCGCGAAATTCCTCTCGAATTGGGTTTTACCGACGATCTGATGTACATCGGCAAATTTGATCTCTCTGTTTTTGTTACCATGGATTCTCAACAATTCTCTCGCCTTGTCGCTGGTTATCATAGGTTTGATTACGTTCATGTTACTGTAACGAGCTCACAAATGATATTCATTTTCGCAATTATGGAACAGACAGTTCTTACAACACGTAATGGAGGATGTATAATTGGAGGTCTTAAAGCACCAAATCAAATTCAATTCACAATCTCTTTAAGACCAGCAAAAGCTTTTTATGATATGGTAAGACAAACGAAGAGGATTTGGATATTCAAGTTATGTAATTCAACCAAAGGTTTAATTACTGCTCCTCTTGGATTGAATGGTCGATTTGTCGCTTTTCTTGTGAAGACATGA

Protein sequence

MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSVPNSERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAFLVKT
Homology
[Close]
BLAST of Lsi09G016430 vs. ExPASy TrEMBL
Match: A0A1S3CBB9 (uncharacterized protein LOC103498776 OS=Cucumis melo OX=3656 GN=LOC103498776 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 2.0e-77
Identity = 143/246 (58.13%), Postives = 188/246 (76.42%), Query Frame = 0 

Query: 1   MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFF 60
           M F+FVVN+M+ LI+A+ TL + + + DATFSPEMFC++ DS + +  + IGLQLWPPFF
Sbjct: 1   MSFNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNV-SIHSTIGLQLWPPFF 60

Query: 61  DHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSERAQLNFQGPNGLLREIPL 120
           DHYFC++LQ SWF  N+ F LA  LQ SGYTS +FS+ PN + AQ+ FQGPNGLL E   
Sbjct: 61  DHYFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFSIGPNPDLAQIKFQGPNGLLHETNF 120

Query: 121 ELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTV 180
           EL ++   + I  FDLSVFV+MDSQ+FS +++ YH FD VHVT+TS ++IF ++IM++T+
Sbjct: 121 ELVYSHHPLRIPDFDLSVFVSMDSQEFSNVISQYHMFDDVHVTITSERVIFSYSIMQETI 180

Query: 181 LTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGL 240
           L  +NG CIIGG+KAPNQ+QF ++L P++ F  +  QTKR+W FK CNS KGLITAPLGL
Sbjct: 181 LNQQNGQCIIGGIKAPNQVQFILTLGPSEVFNHIASQTKRVWFFKQCNSNKGLITAPLGL 240

Query: 241 NGRFVA 246
           N R VA
Sbjct: 241 NSRLVA 245

[Close]
BLAST of Lsi09G016430 vs. ExPASy TrEMBL
Match: A0A0A0LIF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848840 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 3.3e-72
Identity = 137/245 (55.92%), Postives = 182/245 (74.29%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F+F+VN+MR L++A  TL + +H  DATFSPEMFCL+ADS + +  +AIGLQLWPPFFDH
Sbjct: 4   FNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNV-SIHSAIGLQLWPPFFDH 63

Query: 63  YFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSERAQLNFQGPNGLLREIPLEL 122
           YFC  L+ SWF  ++ F LA  L+  GYTS +FS+  +   AQ+ FQGP  LL E+ L L
Sbjct: 64  YFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEFQGPTRLLLEVTLRL 123

Query: 123 GFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLT 182
            F    + I +FDLSVFV+MDSQQFS L++ YH FD VHVT+TS ++IF ++ M++T+L+
Sbjct: 124 VFCHLPLRIHQFDLSVFVSMDSQQFSNLISQYHMFDDVHVTITSERVIFSYSTMQETILS 183

Query: 183 TRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNG 242
            +NG CIIGGL+AP++++F I+L P + F  +  QTKR+W FK CNS +GLITAPLGLN 
Sbjct: 184 PQNGQCIIGGLRAPDEVEFVITLGPQEVFNHIASQTKRVWFFKQCNSNRGLITAPLGLNA 243

Query: 243 RFVAF 247
           R VAF
Sbjct: 244 RLVAF 247

[Close]
BLAST of Lsi09G016430 vs. ExPASy TrEMBL
Match: A0A0A0KFM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106730 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 121/247 (48.99%), Postives = 174/247 (70.45%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F   V+DM+ LI+++ TL +V+ M DA FSP+ FC++ADS   +  +A G+QLWPPFFD 
Sbjct: 4   FRVAVDDMKVLIDSLITLGLVDVMADAIFSPDTFCIMADSDA-SIHSAFGVQLWPPFFDS 63

Query: 63  YFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--NSERAQLNFQGPNGLLREIPL 122
           ++ + + Q  WF L   F+LA++L  SGYTSLTFS+       AQ  F+GPNGLLR++  
Sbjct: 64  FYSDDIRQLFWFRLTHLFTLAVELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNF 123

Query: 123 ELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTV 182
            L      + IG+ DLS FV+MDS++FS +++ YH FDYV V +TS ++ F +AI+++T+
Sbjct: 124 LLTPVVRPLRIGQIDLSAFVSMDSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETI 183

Query: 183 LTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGL 242
           +T  +G C+IGG++APNQ+QF I++    AF+    Q+KRIW+FK  NSTKG+ITAPLGL
Sbjct: 184 ITPEDGQCLIGGVRAPNQVQFIITMSQPNAFFHFASQSKRIWLFKEVNSTKGIITAPLGL 243

Query: 243 NGRFVAF 247
            GR V+F
Sbjct: 244 YGRLVSF 249

[Close]
BLAST of Lsi09G016430 vs. ExPASy TrEMBL
Match: A0A5D3DMK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003150 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 121/247 (48.99%), Postives = 173/247 (70.04%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F   VNDM+ LI+ + TL +V+ M D  FSP+MFC++ADS + +  +A G++L PPFFD 
Sbjct: 4   FRVSVNDMKVLIDPLITLGLVDIMADGIFSPDMFCIMADSDV-SIHSAFGIELLPPFFDT 63

Query: 63  YFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--NSERAQLNFQGPNGLLREIPL 122
           ++ +++ Q  WF L   F LA++L  SGYTS TFS+       AQ  F+GPNGLLRE+  
Sbjct: 64  FYADEVRQLFWFRLTHLFPLAVQLLESGYTSFTFSIERFRYNHAQFRFEGPNGLLREVNF 123

Query: 123 ELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTV 182
            L      + IG+ DLS FVTMDSQ+FS +++ YH FDYV V +T+ ++ F +AI+++T+
Sbjct: 124 LLTPVVRPLSIGEIDLSAFVTMDSQEFSNIISEYHMFDYVQVIITNRRVSFSYAIIQETI 183

Query: 183 LTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGL 242
           +T ++G CIIGG++ PN++QF I++    AFY    Q+KRIW+FK  NSTKG+ITAPLGL
Sbjct: 184 ITPQDGQCIIGGIRPPNEVQFIITMSQPDAFYHFASQSKRIWLFKEVNSTKGIITAPLGL 243

Query: 243 NGRFVAF 247
           +GR V+F
Sbjct: 244 HGRLVSF 249

[Close]
BLAST of Lsi09G016430 vs. ExPASy TrEMBL
Match: A0A6J1L2R2 (uncharacterized protein LOC111499308 OS=Cucurbita maxima OX=3661 GN=LOC111499308 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 3.2e-59
Identity = 115/244 (47.13%), Postives = 164/244 (67.21%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F FV+N M+ L++A + +   + M D  FS EMF ++ADSY       I L LWP FFD 
Sbjct: 7   FKFVLNQMQDLVDAASVVASADDMADMKFSREMFAIMADSYPALG-GVIALHLWPQFFDE 66

Query: 63  YFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSVPNSERAQLNFQGPNGLLREIPLELG 122
           Y CN+L +SW  +   F L + ++ SG+ SL+F+V   E A+L FQ PNGL  E+  EL 
Sbjct: 67  YVCNELLKSWTFVKNLFPLMIDMEESGFNSLSFTVTYPESAELKFQAPNGLSNEVEFELI 126

Query: 123 FTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTT 182
            + D + +G FD S FV++DS++F  +V  YH FDYVHVTVTS+++IF +AIM +T+LT 
Sbjct: 127 PSLDPLEVGDFDFSSFVSLDSEEFVNIVTEYHMFDYVHVTVTSTRVIFSYAIMLETILTQ 186

Query: 183 RNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGR 242
            +G C+IGG+ APN ++F I+L P +AFY M  ++KR+W++K   +TKG+I  PLGL  R
Sbjct: 187 EDGECLIGGITAPNHMEFIITLSPIEAFYSMAHRSKRVWLYKSMKTTKGVIIFPLGLYYR 246

Query: 243 FVAF 247
           FVA+
Sbjct: 247 FVAY 249

[Close]
BLAST of Lsi09G016430 vs. NCBI nr
Match: XP_038876014.1 (uncharacterized protein LOC120068348 [Benincasa hispida])

HSP 1 Score: 317.0 bits (811), Expect = 1.5e-82
Identity = 154/249 (61.85%), Postives = 196/249 (78.71%), Query Frame = 0 

Query: 1   MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFF 60
           M F+FVVNDMR LINA T + MV+ M D TFSPEM C++ADSY+ +  AAIG+QLWPPFF
Sbjct: 1   MLFNFVVNDMRTLINAATAVGMVDTMADVTFSPEMLCIMADSYV-SIKAAIGIQLWPPFF 60

Query: 61  DHYFC-NKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV--PNSERAQLNFQGPNGLLREI 120
           DHYFC N LQRSWF L K F L L+L  SGYTS TFS+  P  ERA+L F+GPNGLL EI
Sbjct: 61  DHYFCINNLQRSWFYLTKIFPLTLELLDSGYTSFTFSIIEPYEERAKLKFEGPNGLLHEI 120

Query: 121 PLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQ 180
             +L ++   +Y+G+FDLSVFV++DSQ+FS +V  YH FDYVHVT+TS+++ F +AI+++
Sbjct: 121 EFKLYYSHHPLYVGEFDLSVFVSLDSQEFSSIVDEYHMFDYVHVTITSTRVTFSYAIVQE 180

Query: 181 TVLTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPL 240
           T+LT ++G C+IGG++APNQIQF I+L PA+ FY +  + KRIW FK  NSTKG+ITAP+
Sbjct: 181 TILTPQDGQCLIGGVRAPNQIQFIITLAPAEVFYHIAGEAKRIWFFKAFNSTKGVITAPI 240

Query: 241 GLNGRFVAF 247
           GLNGR VAF
Sbjct: 241 GLNGRLVAF 248

[Close]
BLAST of Lsi09G016430 vs. NCBI nr
Match: XP_008459734.1 (PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 4.1e-77
Identity = 143/246 (58.13%), Postives = 188/246 (76.42%), Query Frame = 0 

Query: 1   MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFF 60
           M F+FVVN+M+ LI+A+ TL + + + DATFSPEMFC++ DS + +  + IGLQLWPPFF
Sbjct: 1   MSFNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNV-SIHSTIGLQLWPPFF 60

Query: 61  DHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSERAQLNFQGPNGLLREIPL 120
           DHYFC++LQ SWF  N+ F LA  LQ SGYTS +FS+ PN + AQ+ FQGPNGLL E   
Sbjct: 61  DHYFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFSIGPNPDLAQIKFQGPNGLLHETNF 120

Query: 121 ELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTV 180
           EL ++   + I  FDLSVFV+MDSQ+FS +++ YH FD VHVT+TS ++IF ++IM++T+
Sbjct: 121 ELVYSHHPLRIPDFDLSVFVSMDSQEFSNVISQYHMFDDVHVTITSERVIFSYSIMQETI 180

Query: 181 LTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGL 240
           L  +NG CIIGG+KAPNQ+QF ++L P++ F  +  QTKR+W FK CNS KGLITAPLGL
Sbjct: 181 LNQQNGQCIIGGIKAPNQVQFILTLGPSEVFNHIASQTKRVWFFKQCNSNKGLITAPLGL 240

Query: 241 NGRFVA 246
           N R VA
Sbjct: 241 NSRLVA 245

[Close]
BLAST of Lsi09G016430 vs. NCBI nr
Match: XP_004146827.2 (uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus] >KGN59826.1 hypothetical protein Csa_001355 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 6.8e-72
Identity = 137/245 (55.92%), Postives = 182/245 (74.29%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F+F+VN+MR L++A  TL + +H  DATFSPEMFCL+ADS + +  +AIGLQLWPPFFDH
Sbjct: 4   FNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNV-SIHSAIGLQLWPPFFDH 63

Query: 63  YFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSERAQLNFQGPNGLLREIPLEL 122
           YFC  L+ SWF  ++ F LA  L+  GYTS +FS+  +   AQ+ FQGP  LL E+ L L
Sbjct: 64  YFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEFQGPTRLLLEVTLRL 123

Query: 123 GFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLT 182
            F    + I +FDLSVFV+MDSQQFS L++ YH FD VHVT+TS ++IF ++ M++T+L+
Sbjct: 124 VFCHLPLRIHQFDLSVFVSMDSQQFSNLISQYHMFDDVHVTITSERVIFSYSTMQETILS 183

Query: 183 TRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNG 242
            +NG CIIGGL+AP++++F I+L P + F  +  QTKR+W FK CNS +GLITAPLGLN 
Sbjct: 184 PQNGQCIIGGLRAPDEVEFVITLGPQEVFNHIASQTKRVWFFKQCNSNRGLITAPLGLNA 243

Query: 243 RFVAF 247
           R VAF
Sbjct: 244 RLVAF 247

[Close]
BLAST of Lsi09G016430 vs. NCBI nr
Match: XP_011652354.1 (uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-69
Identity = 135/245 (55.10%), Postives = 180/245 (73.47%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F+F+VN+MR L++A  TL + +H  DATFSPEMFCL+ADS + +  +AIGLQLWPPFFDH
Sbjct: 4   FNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNV-SIHSAIGLQLWPPFFDH 63

Query: 63  YFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSERAQLNFQGPNGLLREIPLEL 122
           YFC  L+ SWF  ++ F LA  L+  GYTS +FS+  +   AQ+ FQGP  LL E+ L L
Sbjct: 64  YFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEFQGPTRLLLEVTLRL 123

Query: 123 GFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLT 182
            F    + I +FDLSVFV+MDSQQFS L++ YH FD VHVT+TS ++IF ++ M++T+L+
Sbjct: 124 VFCHLPLRIHQFDLSVFVSMDSQQFSNLISQYHMFDDVHVTITSERVIFSYSTMQETILS 183

Query: 183 TRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNG 242
            +   CIIGGL+AP++++F I+L P + F  +  QTKR+W FK CNS +GLITAPLGLN 
Sbjct: 184 PQ---CIIGGLRAPDEVEFVITLGPQEVFNHIASQTKRVWFFKQCNSNRGLITAPLGLNA 243

Query: 243 RFVAF 247
           R VAF
Sbjct: 244 RLVAF 244

[Close]
BLAST of Lsi09G016430 vs. NCBI nr
Match: KAE8646781.1 (hypothetical protein Csa_005116, partial [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.5e-60
Identity = 122/247 (49.39%), Postives = 172/247 (69.64%), Query Frame = 0 

Query: 3   FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDH 62
           F   V+DM+ LI+ + TL +V+ M DA FSP+ FC++ADS   +  +A G+QLWPPFFD 
Sbjct: 18  FRVAVDDMKVLIDPLITLGLVDVMADAIFSPDTFCIMADSDA-SIHSAFGVQLWPPFFDS 77

Query: 63  YFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--NSERAQLNFQGPNGLLREIPL 122
           ++ + + Q  WF L   F LA++L  SGYTSLTFS+       AQ  F+GPNGLLR++  
Sbjct: 78  FYSDDIRQLFWFRLTHLFPLAVELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNF 137

Query: 123 ELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTV 182
            L      + IG+ DLS FV+MDS++FS +++ YH FDYV V +TS ++ F +AI+++T+
Sbjct: 138 LLTPVVRPLRIGQIDLSAFVSMDSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETI 197

Query: 183 LTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGL 242
           +T  +G C+IGG++APNQ+QF I++    AFY    Q+KRIW+FK  NSTKG+ITAPLGL
Sbjct: 198 ITPEDGQCLIGGVRAPNQVQFIITMSQPDAFYHFASQSKRIWLFKEVNSTKGIITAPLGL 257

Query: 243 NGRFVAF 247
            GR V+F
Sbjct: 258 YGRLVSF 263

The following BLAST results are available for this feature:
BLAST of Lsi09G016430 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi09G016430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CBB92.0e-7758.13uncharacterized protein LOC103498776 OS=Cucumis melo OX=3656 GN=LOC103498776 PE=... [more]
A0A0A0LIF23.3e-7255.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848840 PE=4 SV=1[more]
A0A0A0KFM51.7e-6048.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106730 PE=4 SV=1[more]
A0A5D3DMK72.9e-6048.99Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1L2R23.2e-5947.13uncharacterized protein LOC111499308 OS=Cucurbita maxima OX=3661 GN=LOC111499308... [more]
BLAST of Lsi09G016430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876014.11.5e-8261.85uncharacterized protein LOC120068348 [Benincasa hispida][more]
XP_008459734.14.1e-7758.13PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo][more]
XP_004146827.26.8e-7255.92uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus] >KGN59826.1 hy... [more]
XP_011652354.15.4e-6955.10uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus][more]
KAE8646781.14.5e-6049.39hypothetical protein Csa_005116, partial [Cucumis sativus][more]
BLAST of Lsi09G016430 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 3..248
e-value: 1.2E-7
score: 33.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016430.1Lsi09G016430.1mRNA