Lsi09G016400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G016400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMajor centromere autoantigen B
Locationchr09: 24714521 .. 24718293 (+)
RNA-Seq ExpressionLsi09G016400
SyntenyLsi09G016400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGTGAATTGAGTTTCCCTTTTTTGAGTTTCATTTGTCTGCCTAAACTGAGTTTTATTTGTCTGCCTAAACATGTACTTCGTGTGGCTTCTTTTTAAAGGTTATTTTCTTTTCATTACTTCTTGTTTTTCATGATTAAAGATAGCAGAAAAACTTTCTGCATACATGTCCAGGTCTTTCTACATTATTAAAAAAAATAAAATAGAAAAATAATGAGTAAGAAATCAAATTATTCAACTTTTAGTGTCCTTCGGTTAGTTCAATCTCAAAATATACATGTGGACTTCCCTATGACCATATCGATGAGGAAAAACTCCATTCTTCTCCAAGATCCAAATCCAAATGTAAGATGACTCATTAAGGTTTATTAATGCAAGATGGTGGGAGAGTGTTGCCCAAATCATTACCTCGGACATAGCATTGAGTCATTGACCATAGAAATAGCAAAGAAAATCATTTATAACAACCAAAAGAATATTTGAATCCATCTTCACTACATTTGTACACATGCAATTCTGAAAAAACCGACTTGACAACATGACTCACGAAATTTATTCCAAACAGCCAATATTATAAATTAAGTATCACTCAGTAAAACAAAGAAAGTAAAGAACTTACCGAAAGAGCCTGGTGCTTGGGATGATGAAGCAGCAGTTGATGTTTTGGTCGGCAACGATAAGGAACCAATTGCACTTGATGAAGAAGCCGTGCTTGTGACACCGAAACCAGTAAATGAACTCACAGCACCCGAAGAAGAAGCCGAGGGAGCGGAGGGTGCTGCTATGGACAAGGTAGTAGCAGCTGAAGAACTCGAACTAAAAGCTGGCACGGAGAAGGATGGCTGAGTTGTGCTATTTGCAGCTGGAGTAGAAGCACTGGTGGTAGTAACCGTAGAGAATAAAGGTGCCACAGTAGTTGAAAACGATAGAGAAGTAGGCTTCGTAGCTGTACTGCTCGGAGCAGAAGACCCTCCCGTCGATGCTGCATTGTTAATACTAAACCCAAAAGAAGATTGAGATGCCGACGAAGCAGGTGTGCCGAATGAGAAGCTCGAGGAACTAGTAGAGGCTGATGTAAGAGAAGAAGAAGATGCAGTGGTAACATTAGTAGTTTTGGACAAAGATGTGGTCGAAAATGAAAACCCAGAAGAAGAAGAAGCCGCAAACGGTGAAGACGAACTCAAATTCTGGGAAGAACTCGAAGAAAGAGAGTTCTGGAATGGAGAAGTCGATGTAGATGATGAAGATGACGCAAACAAGTTTGAAGCGGAAACCGAAGAAGATGCACCGAAGGGACTAGACCCAAACAAAGTTGAACCTGCACTTCCTGAAGATGTAGATGTCCCAAACAGGGGGGAGCTAGAAGCAGAAGCCGCGGCAGCAGAAGCGCCAAACAACGCTGATCCCGGACTTGTAGTGGATGCAGATGTGCCAAACAATGGTGCACTGGAAGTAGTTGCAGAAGATACCCCACCAAACAAGGACGGAGCCGAGGCCCCGGCAGATGGAGCAGCCCCAAACAAGGGCGTAGATGAGCTCCCAGAGGACGGAAGAGCCCCAAACGAGGGCACAAGTGAGGTCCCAGAAGAGGGAGTAGCCCCAAACAAGGGCGCAGATGAGCTCCCAGAGGACGAAGCCGCTCCAAACAAGGGCGCAGATGAGCTCCCAGAGGACGAAGCCGCCCCAAACACGGGCGCAGACGAGCTCCCAGAGGATAGAGCAGCCCCAAACAAGGACGCAGACGAGTTCCCTGATGAAGATGAAGCCCCAAATCCGAAAGAAGTCAATCCACCTGAGGATGAAGAAACCCCAAACAAGGAAGAAGCTGAAGTTGCTGAAGAGGAAGAAGCCCCAGTGGAAGCGGCGGGGAGGGAGAAAGGGAAGGGAGAGGAAGTGGAGGAGGGGAAAGAGGAAGAGCCAAAGCCGAAAGAAGAGGAAGAAGCGGGATTGGAGGTTTGATTGGAAAATGGAGAGGAAGAGGAGGTAGGGTTTAAGGAGGAAGAAGATGAAAGAGATAAAGGGGATGATGATGCTGATGATGATCCGAAGGAGAAGGCGGAGGTGGATCCGAATGAGAAACCAGTGGCTGAGGAAAATGGAGAAGAAGAAGAAGATTGGGAGGAGGACGATCCGAAGGCGAAACCCGACATCTCGATCGATCTCCGGCGGAAGAGACTGTCAACTGAGGGTTTTAACGGGGTTTTTAGCGGAAATGGTATTTATCCAAATAATTTCAAATTTTGCAGTACGATGAATCACAAGTAAAAAAAAAAAATTAAAATATGAAATATAAAATTGGAAAATTTTTTGGAAAATTTTTAAAAATAAAAAGATAAAAATTATTTACACAAAATAGCAAAAATTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTAGAAATGATAGAAGTTTATCACTAACAAATGCGGATAGAAATCTATCAATGTCTATTTGTGTTTTTTTTTTTTTTTTTTGTTATTTTCTGTAAATAGTTTGACATCTTTTCTAGGTAAAAATTTTTCAAATTATTTTAAATGATAAAATGCTGAAAATATTTATATATATGGACACAAATAGTAGTCTATCGCAAATAGACAGTAAAATTTTATTATATTTATAAATATTTTAGTTTATTTTCCTATATTTAAAAATAGTCCTAAAACTCTAAAATAACCATATTTGTAACTATTGGAAATTTGAAGGATTTAAAATTATAAAGGATTTGAAATAAGGGTAATTGTAGTGAGTAACAATTTTAAGGGTAATAACTTAGTGTATAACAACATTTTTTAAAAATTACAAATATAGTAAAGTCTATAAGTTATAGACTTCCATCGCTGATAGACGTTTATGGTATATATCTCAAGCGATAGAAATCTATTGTGATCTATCGCTGATAGACAATGAAATTTTTCTATATTTGTAAATAGTTTGACTCATTTTTCTATATTGAAGACATTGCATTTTTTTACTATAGTTTTCATTAAATAAACATATTAATCAAATTCTAAAAACAAAAACAAGTTTTTAAAAACTACTTTTAGTTTTCAAATTTTGACATGCGTTTTTAAAACATTAATAGAAAATGAAAAACAGACATAGAGAGCATATGAATGAAAGTAGAGCGTACAAGCTTCTTTTTTCCAAAAAAAAAAAAAAAAAAAAAGGTAAAAACCAAATGGTCATCAAAACGGAAGTTTCAATATTAGAATGGAGAATGTGATGTCTCAAAGAGGACCATGTGATGTTTAATAACCAAATGGCTTGATTTGAATGCTAGGAATCTTGAATTCATAAGATTAAGTTCTTGTTGTAACAGCATCTTTAGAAAGAAAAAAAGTGACAATGTGATAACTTGTGAATAATGCGTTATAGTATCATAATTAGTATTGACATTTTACTATTTTGAAAGCATAAATTACCATCACTTTAAGCATTTGAGGATGAACGTGCCATAACATGTGGAACCATGATTTGAACAAAACATAGAAACATATGAGTAAAGTCATTTCAAGCTCCATTCTAGAGATTTGAGTATGGTAAAGAGTTAAAAAACTCTTACATAAATGACTAGTTTTTTTTTCTTGAACTTTGATCGATTTGCTTCTAGGGTAGTATATTATTCTTGAGTAGTTTTCTAATGTACTTATAGATCTAATAAGTACTATATGTTAGAATTGAGAAACTATATGATTCAAATGTTTAGTATTATTTTATTTATTACATGTATATTATTTAGGCAGAATACTGTCACCTATTGTTACTAA

mRNA sequence

ATGGACAATAAAACAAAGAAAGTAAAGAACTTACCGAAAGAGCCTGGTGCTTGGGATGATGAAGCAGCAGTTGATGTTTTGGTCGGCAACGATAAGGAACCAATTGCACTTGATGAAGAAGCCGTGCTTGTGACACCGAAACCAGTAAATGAACTCACAGCACCCGAAGAAGAAGCCGAGGGAGCGGAGGGTGTGCCGAATGAGAAGCTCGAGGAACTAGTAGAGGCTGATGTAAGAGAAGAAGAAGATGCAGTGGTAACATTAGTAGTTTTGGACAAAGATGTGGTCGAAAATGAAAACCCAGAAGAAGAAGAAGCCGCAAACGGTGAAGACGAACTCAAATTCTGGGAAGAACTCGAAGAAAGAGAGTTCTGGAATGGAGAAGTCGATGTAGATGATGAAGATGACGCAAACAAGTTTGAAGCGGAAACCGAAGAAGATGCACCGAAGGGACTAGACCCAAACAAAGTTGAACCTGCACTTCCTGAAGATGTAGATGTCCCAAACAGGGGGGAGCTAGAAGCAGAAGCCGCGGCAGCAGAAGCGCCAAACAACGCTGATCCCGGACTTGTAGTGGATGCAGATGTGCCAAACAATGGTGCACTGGAAGTAGTTGCAGAAGATACCCCACCAAACAAGGACGGAGCCGAGGCCCCGGCAGATGGAGCAGCCCCAAACAAGGGCGTAGATGAGCTCCCAGAGGACGGAAGAGCCCCAAACGAGGGCACAAGTGAGGTCCCAGAAGAGGGAGTAGCCCCAAACAAGGGCGCAGATGAGCTCCCAGAGGACGAAGCCGCTCCAAACAAGGGCGCAGATGAGCTCCCAGAGGACGAAGCCGCCCCAAACACGGGCGCAGACGAGCTCCCAGAGGATAGAGCAGCCCCAAACAAGGACGCAGACGAGTTCCCTGATGAAGATGAAGCCCCAAATCCGAAAGAAGTCAATCCACCTGAGGATGAAGAAACCCCAAACAAGGAAGAAGCTGAAGTTGCTGAAGAGGAAGAAGCCCCAGTGGAAGCGGCGGGGAGGGAGAAAGGGAAGGGAGAGGAAGTGGAGGAGGGGAAAGAGGAAGAGCCAAAGCCGAAAGAAGAGGAAGAAGCGGGATTGGAGGAGGAAGAAGATGAAAGAGATAAAGGGGATGATGATGCTGATGATGATCCGAAGGAGAAGGCGGAGGTGGATCCGAATGAGAAACCAGTGGCTGAGGAAAATGGAGAAGAAGAAGAAGATTGGGAGGAGGACGATCCGAAGGCGAAACCCGACATCTCGATCGATCTCCGGCGGAAGAGACTGTCAACTGAGGGTTTTAACGGGAATACTGTCACCTATTGTTACTAA

Coding sequence (CDS)

ATGGACAATAAAACAAAGAAAGTAAAGAACTTACCGAAAGAGCCTGGTGCTTGGGATGATGAAGCAGCAGTTGATGTTTTGGTCGGCAACGATAAGGAACCAATTGCACTTGATGAAGAAGCCGTGCTTGTGACACCGAAACCAGTAAATGAACTCACAGCACCCGAAGAAGAAGCCGAGGGAGCGGAGGGTGTGCCGAATGAGAAGCTCGAGGAACTAGTAGAGGCTGATGTAAGAGAAGAAGAAGATGCAGTGGTAACATTAGTAGTTTTGGACAAAGATGTGGTCGAAAATGAAAACCCAGAAGAAGAAGAAGCCGCAAACGGTGAAGACGAACTCAAATTCTGGGAAGAACTCGAAGAAAGAGAGTTCTGGAATGGAGAAGTCGATGTAGATGATGAAGATGACGCAAACAAGTTTGAAGCGGAAACCGAAGAAGATGCACCGAAGGGACTAGACCCAAACAAAGTTGAACCTGCACTTCCTGAAGATGTAGATGTCCCAAACAGGGGGGAGCTAGAAGCAGAAGCCGCGGCAGCAGAAGCGCCAAACAACGCTGATCCCGGACTTGTAGTGGATGCAGATGTGCCAAACAATGGTGCACTGGAAGTAGTTGCAGAAGATACCCCACCAAACAAGGACGGAGCCGAGGCCCCGGCAGATGGAGCAGCCCCAAACAAGGGCGTAGATGAGCTCCCAGAGGACGGAAGAGCCCCAAACGAGGGCACAAGTGAGGTCCCAGAAGAGGGAGTAGCCCCAAACAAGGGCGCAGATGAGCTCCCAGAGGACGAAGCCGCTCCAAACAAGGGCGCAGATGAGCTCCCAGAGGACGAAGCCGCCCCAAACACGGGCGCAGACGAGCTCCCAGAGGATAGAGCAGCCCCAAACAAGGACGCAGACGAGTTCCCTGATGAAGATGAAGCCCCAAATCCGAAAGAAGTCAATCCACCTGAGGATGAAGAAACCCCAAACAAGGAAGAAGCTGAAGTTGCTGAAGAGGAAGAAGCCCCAGTGGAAGCGGCGGGGAGGGAGAAAGGGAAGGGAGAGGAAGTGGAGGAGGGGAAAGAGGAAGAGCCAAAGCCGAAAGAAGAGGAAGAAGCGGGATTGGAGGAGGAAGAAGATGAAAGAGATAAAGGGGATGATGATGCTGATGATGATCCGAAGGAGAAGGCGGAGGTGGATCCGAATGAGAAACCAGTGGCTGAGGAAAATGGAGAAGAAGAAGAAGATTGGGAGGAGGACGATCCGAAGGCGAAACCCGACATCTCGATCGATCTCCGGCGGAAGAGACTGTCAACTGAGGGTTTTAACGGGAATACTGTCACCTATTGTTACTAA

Protein sequence

MDNKTKKVKNLPKEPGAWDDEAAVDVLVGNDKEPIALDEEAVLVTPKPVNELTAPEEEAEGAEGVPNEKLEELVEADVREEEDAVVTLVVLDKDVVENENPEEEEAANGEDELKFWEELEEREFWNGEVDVDDEDDANKFEAETEEDAPKGLDPNKVEPALPEDVDVPNRGELEAEAAAAEAPNNADPGLVVDADVPNNGALEVVAEDTPPNKDGAEAPADGAAPNKGVDELPEDGRAPNEGTSEVPEEGVAPNKGADELPEDEAAPNKGADELPEDEAAPNTGADELPEDRAAPNKDADEFPDEDEAPNPKEVNPPEDEETPNKEEAEVAEEEEAPVEAAGREKGKGEEVEEGKEEEPKPKEEEEAGLEEEEDERDKGDDDADDDPKEKAEVDPNEKPVAEENGEEEEDWEEDDPKAKPDISIDLRRKRLSTEGFNGNTVTYCY
Homology
BLAST of Lsi09G016400 vs. ExPASy TrEMBL
Match: A0A5A7T8D7 (Major centromere autoantigen B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003170 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.2e-87
Identity = 238/352 (67.61%), Postives = 256/352 (72.73%), Query Frame = 0

Query: 88  LVVLDKDVVENENPEEEEAANGEDELKFWEELEEREFWNGEVDVDDEDDANKFEAET--- 147
           LVVLDK +V NENP E EAANGEDE+KFWEELEERE WNGE+   D+DDANKFE ET   
Sbjct: 2   LVVLDKVLVGNENP-EGEAANGEDEVKFWEELEERELWNGEL---DKDDANKFEVETDDE 61

Query: 148 --EEDAPKGLDPNKVEPALPED-VDVPNRGELEAEAAAAEAPNNADPGLVVDADVPNNGA 207
             EEDAPKGLDPNK EP LPED  DVPNR   E E A AEAPNNADP L  DA VPNNGA
Sbjct: 62  VPEEDAPKGLDPNKPEPVLPEDGADVPNREAPEPE-AGAEAPNNADPELAADAAVPNNGA 121

Query: 208 LEVVAEDTPPNKDGA-EAPADGAAPNKGVDELP-EDGRAPNEGTSEVPEEGVAPNKGADE 267
           LEVVAED PPNKDGA +APADGAAPNKG DE+P E+ RAP EG +E+PE+G APN GA E
Sbjct: 122 LEVVAEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGE 181

Query: 268 LPEDEAAPNKGADELPEDEAAPNTGADELPEDRAAPNKDADEFPDEDEAPNPKEVNPPED 327
           LP    APNK ADE+PE+EAAPN G              A+EF DEDEAPNPKE+NP ED
Sbjct: 182 LP----APNKEADEVPEEEAAPNKG--------------AEEFADEDEAPNPKELNPVED 241

Query: 328 EETPNKEEAEVAE-----EEEAPVEAAGREKGKGEEVEEGKEEEPKPKEEEEAG------ 387
           EETPNK+EAE AE     EE+APVEA  REK KGEEVEE KEEEPKPKEEEE G      
Sbjct: 242 EETPNKDEAEGAEEEGTLEEDAPVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGL 301

Query: 388 ----------LEEEEDERDKGDDDADDDPKEKAEVDPNEKPVAEENGEEEED 411
                      EEEED+RDKG+    DDPKEK  VDP EKPV EENGEEEED
Sbjct: 302 GNGEDEEVGFEEEEEDDRDKGE---ADDPKEKV-VDPKEKPVVEENGEEEED 326

BLAST of Lsi09G016400 vs. ExPASy TrEMBL
Match: A0A2P5CJH4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_147870 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.1e-09
Identity = 161/434 (37.10%), Postives = 206/434 (47.47%), Query Frame = 0

Query: 33  EPIALDEEAVLVTPKPVNELTAPEEEAEGAEGVPNEKLEELVEADVRE-EEDAVV----T 92
           E +A D++A+     P  +  A  EE    +  PNEKLEELVE +V E  E+AVV    +
Sbjct: 113 EKVAADDDAL---RDPNKDWEAKAEE----DCCPNEKLEELVEDNVVEGTEEAVVVDAES 172

Query: 93  LVVLDK-DVVENENPEEEEAA-NGEDELKFWEELEEREFWN-----------------GE 152
           +V   K ++VENE PEE+EAA  GE  ++F  EL   +F N                 GE
Sbjct: 173 VVGFPKAELVENEKPEEDEAAKKGEAGVEFEVELVVDKFGNAGVAEAEEEELEEPNKEGE 232

Query: 153 VDVDDEDDANKFEAE--TEEDAPK----GLDPNKVEPALPEDVDVPNRGELEAEAAAAEA 212
            + +  DD NK  AE   +E  P     GLDPN+  P L  + DVPNRGELEAE AA +A
Sbjct: 233 ENAEAVDDPNKDGAELGADEGVPNRVGVGLDPNRNGPELVTEEDVPNRGELEAELAAEKA 292

Query: 213 PNNADPGLVVDADVPNNGALEVVAEDTPPNKDGAEAPADGAAPNKGVDELPEDGRAPNEG 272
              A         V NNG LE+         D AE    G A   GVD++  +   PN  
Sbjct: 293 EPEA---------VANNGELEIAG-------DEAEEANKGEAEVGGVDDVAAEVE-PNRD 352

Query: 273 TSEVPEEGVAPNKGADELPEDEAAPNKGADELPEDEAAPNTGADELPEDRAAPNKDADEF 332
               P E   PNK   +  EDE APNK   +  EDEA    G D   ++  APN+   + 
Sbjct: 353 ----PAEDEDPNKDGVDAAEDE-APNKDGVDAAEDEAPNKDGVDAAEDE--APNRGGVDA 412

Query: 333 PDEDEAPNPKEVNPPEDEETPNKEEAEVAEEEEAPVEAAGREKGKGEEVEEGKEEEP--- 392
             E EAPN   V+   DE  P +    V EE+  P +    E G G   EE +E++    
Sbjct: 413 AAE-EAPNKDGVDKGADEGVPKR---GVEEEDVNPNKGEAEELGFGVAEEEDEEDDDVLK 472

Query: 393 -KPKEEEEAGLEEEEDERDKGDDDADDDPKEKAEVDPNEKPVAEENGEEEEDWEEDD--- 426
            K K E E G EE   E D  D   + DP    E DPNE   +E+  E+EE+ EED+   
Sbjct: 473 GKEKAEVELGFEEGRGE-DPNDRPVELDPNTGVE-DPNESGDSEDEDEDEEEVEEDEGFE 509

BLAST of Lsi09G016400 vs. ExPASy TrEMBL
Match: A0A267F393 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig019565g3 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.8e-04
Identity = 141/436 (32.34%), Postives = 208/436 (47.71%), Query Frame = 0

Query: 12  PKEPGAWDDEAAVDVLVGNDKEPIALDEEAVLVTPKPVNELTAPEEEAEGAEGVPNE--- 71
           P+E     +E   +  V  +K+P    EE V    K   E  A EEE    E V  E   
Sbjct: 549 PQEEDVEKEEKPQEEDVEEEKKP---QEEDVEEEEKLKEEEDAEEEEKPQEEDVDEEEKL 608

Query: 72  KLEELVEAD--VREEEDAVVTLVVLDKDVVENENPEEEEAANGEDELKFWEELEEREFWN 131
           K EE VE +  ++EEEDA       ++DV E E P+EE+    E++LK  E+ EE E   
Sbjct: 609 KEEEDVEEEEKLKEEEDAEEEEKPQEEDVEEEEKPQEEDVEE-EEKLKEEEDAEEEE-KP 668

Query: 132 GEVDVDDEDDANKFEAETEEDAPKGLDPNKVEPALPEDVDVPNRGELEAEAAAAEAPNNA 191
            E DV++E+   + + + EE+ P+  D  + E    EDVD   + + E +A   E P   
Sbjct: 669 QEEDVEEEEKPQEEDVD-EEEKPQEEDAEEEEKPQEEDVDEEEKLKEEEDAEEEEKPQEE 728

Query: 192 D----PGLVVDADVPNNGALEVVAEDTPPNKDGAEAPADGAAPNKGVDELPEDGRAPNEG 251
           D      L  + D       E V E+  P ++  E   D   P +  D   E+     E 
Sbjct: 729 DVDEEEKLKEEEDAEEEKPQEDVEEEEKPQEEDVE---DKDNPKEEEDVEDEEKPKEEED 788

Query: 252 TSEVPEEGVAPNKGADELPEDEAAPNKGADELPEDEAAPNTGADELPEDRAAPNKDADEF 311
             E P+E     + A+E P++E    + A+E P++E        E  E++    +DA+E 
Sbjct: 789 MEEKPKE----EEDAEEKPKEE----EDAEEKPKEE--------EDAEEKPKEEEDAEEK 848

Query: 312 P--DEDEAPNPKEVNPPEDEETPNKEEAEVAEEEEAPVEAAGREKGKGEEVEEGKEEEPK 371
           P  +ED    PKE    EDEE P ++  E  E+ +   +A   EK K ++V    EEE K
Sbjct: 849 PKEEEDAEEKPKEEEDAEDEEKPKEDYVEEEEKPKKEEDAEDEEKPKEDDV----EEEEK 908

Query: 372 PKEEEEAGLEE-------EEDERDKGDDDADDDPKEKA-EVDPNEKPVAEENGEEEEDWE 423
           PKEEE+A  +E       EE+E+ K ++DA+D  K K  +V+  EKP  EE+ E+EE  +
Sbjct: 909 PKEEEDAEDKEKPKEDDVEEEEKPKEEEDAEDKEKPKEDDVEEEEKPKKEEDAEDEEKPK 955

BLAST of Lsi09G016400 vs. NCBI nr
Match: KAA0039742.1 (hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa] >TYK24754.1 major centromere autoantigen B [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 4.5e-87
Identity = 238/352 (67.61%), Postives = 256/352 (72.73%), Query Frame = 0

Query: 88  LVVLDKDVVENENPEEEEAANGEDELKFWEELEEREFWNGEVDVDDEDDANKFEAET--- 147
           LVVLDK +V NENP E EAANGEDE+KFWEELEERE WNGE+   D+DDANKFE ET   
Sbjct: 2   LVVLDKVLVGNENP-EGEAANGEDEVKFWEELEERELWNGEL---DKDDANKFEVETDDE 61

Query: 148 --EEDAPKGLDPNKVEPALPED-VDVPNRGELEAEAAAAEAPNNADPGLVVDADVPNNGA 207
             EEDAPKGLDPNK EP LPED  DVPNR   E E A AEAPNNADP L  DA VPNNGA
Sbjct: 62  VPEEDAPKGLDPNKPEPVLPEDGADVPNREAPEPE-AGAEAPNNADPELAADAAVPNNGA 121

Query: 208 LEVVAEDTPPNKDGA-EAPADGAAPNKGVDELP-EDGRAPNEGTSEVPEEGVAPNKGADE 267
           LEVVAED PPNKDGA +APADGAAPNKG DE+P E+ RAP EG +E+PE+G APN GA E
Sbjct: 122 LEVVAEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGE 181

Query: 268 LPEDEAAPNKGADELPEDEAAPNTGADELPEDRAAPNKDADEFPDEDEAPNPKEVNPPED 327
           LP    APNK ADE+PE+EAAPN G              A+EF DEDEAPNPKE+NP ED
Sbjct: 182 LP----APNKEADEVPEEEAAPNKG--------------AEEFADEDEAPNPKELNPVED 241

Query: 328 EETPNKEEAEVAE-----EEEAPVEAAGREKGKGEEVEEGKEEEPKPKEEEEAG------ 387
           EETPNK+EAE AE     EE+APVEA  REK KGEEVEE KEEEPKPKEEEE G      
Sbjct: 242 EETPNKDEAEGAEEEGTLEEDAPVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGL 301

Query: 388 ----------LEEEEDERDKGDDDADDDPKEKAEVDPNEKPVAEENGEEEED 411
                      EEEED+RDKG+    DDPKEK  VDP EKPV EENGEEEED
Sbjct: 302 GNGEDEEVGFEEEEEDDRDKGE---ADDPKEKV-VDPKEKPVVEENGEEEED 326

BLAST of Lsi09G016400 vs. NCBI nr
Match: PON61197.1 (hypothetical protein PanWU01x14_147870 [Parasponia andersonii])

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-08
Identity = 161/434 (37.10%), Postives = 206/434 (47.47%), Query Frame = 0

Query: 33  EPIALDEEAVLVTPKPVNELTAPEEEAEGAEGVPNEKLEELVEADVRE-EEDAVV----T 92
           E +A D++A+     P  +  A  EE    +  PNEKLEELVE +V E  E+AVV    +
Sbjct: 113 EKVAADDDAL---RDPNKDWEAKAEE----DCCPNEKLEELVEDNVVEGTEEAVVVDAES 172

Query: 93  LVVLDK-DVVENENPEEEEAA-NGEDELKFWEELEEREFWN-----------------GE 152
           +V   K ++VENE PEE+EAA  GE  ++F  EL   +F N                 GE
Sbjct: 173 VVGFPKAELVENEKPEEDEAAKKGEAGVEFEVELVVDKFGNAGVAEAEEEELEEPNKEGE 232

Query: 153 VDVDDEDDANKFEAE--TEEDAPK----GLDPNKVEPALPEDVDVPNRGELEAEAAAAEA 212
            + +  DD NK  AE   +E  P     GLDPN+  P L  + DVPNRGELEAE AA +A
Sbjct: 233 ENAEAVDDPNKDGAELGADEGVPNRVGVGLDPNRNGPELVTEEDVPNRGELEAELAAEKA 292

Query: 213 PNNADPGLVVDADVPNNGALEVVAEDTPPNKDGAEAPADGAAPNKGVDELPEDGRAPNEG 272
              A         V NNG LE+         D AE    G A   GVD++  +   PN  
Sbjct: 293 EPEA---------VANNGELEIAG-------DEAEEANKGEAEVGGVDDVAAEVE-PNRD 352

Query: 273 TSEVPEEGVAPNKGADELPEDEAAPNKGADELPEDEAAPNTGADELPEDRAAPNKDADEF 332
               P E   PNK   +  EDE APNK   +  EDEA    G D   ++  APN+   + 
Sbjct: 353 ----PAEDEDPNKDGVDAAEDE-APNKDGVDAAEDEAPNKDGVDAAEDE--APNRGGVDA 412

Query: 333 PDEDEAPNPKEVNPPEDEETPNKEEAEVAEEEEAPVEAAGREKGKGEEVEEGKEEEP--- 392
             E EAPN   V+   DE  P +    V EE+  P +    E G G   EE +E++    
Sbjct: 413 AAE-EAPNKDGVDKGADEGVPKR---GVEEEDVNPNKGEAEELGFGVAEEEDEEDDDVLK 472

Query: 393 -KPKEEEEAGLEEEEDERDKGDDDADDDPKEKAEVDPNEKPVAEENGEEEEDWEEDD--- 426
            K K E E G EE   E D  D   + DP    E DPNE   +E+  E+EE+ EED+   
Sbjct: 473 GKEKAEVELGFEEGRGE-DPNDRPVELDPNTGVE-DPNESGDSEDEDEDEEEVEEDEGFE 509

BLAST of Lsi09G016400 vs. NCBI nr
Match: PON85590.1 (hypothetical protein TorRG33x02_185920 [Trema orientale])

HSP 1 Score: 59.3 bits (142), Expect = 9.7e-05
Identity = 160/423 (37.83%), Postives = 199/423 (47.04%), Query Frame = 0

Query: 33  EPIALDEEAVLVTPKPVNELTAPEEEAEGAEGVPNEKLEELVEADVRE-EEDAVV----T 92
           E +A D++A+     P  +  A  EE    +  PNEKLEELVE +V E  E+AVV    +
Sbjct: 113 EKVAADDDAL---RDPNKDWEAEAEE----DCCPNEKLEELVEDNVVEATEEAVVVGAES 172

Query: 93  LVVLDK-DVVENENPEEEEAA-NGEDELKFWEELEEREFWNGEVDVDDEDDANKFEAETE 152
           +V   K ++VENE PEE+EAA  GE  ++F  E    +F N  V   ++++  +   E E
Sbjct: 173 VVGFPKAELVENEKPEEDEAAKKGEAGVEFEVEPVVDKFGNAGVAEAEDEELEEPNKEGE 232

Query: 153 EDAPKGL--DPNKVEPALPEDVDVPNRGELEAEAAAAEAPNNADPGLVVDADVPNNGAL- 212
           E+A +    DPNK    L  D  VPNR            PN+  P LV + DVPN G L 
Sbjct: 233 ENADEEAVDDPNKDGAELGADEGVPNR------VGVVLDPNSDGPELVTEEDVPNRGELE 292

Query: 213 -EVVAEDTPPNKDGAEAPADGAAPNKGVDELPE--DGRAPNEGTSEVPEEGVAPNKGADE 272
            E+ AE   P     EA A+        DE  E   G A   G  EV  E V PN+    
Sbjct: 293 AELAAEKAEP-----EAVANNGELEIAGDEAEEANKGEAEVGGVDEVAAE-VEPNRD--- 352

Query: 273 LPEDEAAPNK-GADELPEDEAAPNTGADELPEDRAAPNKDADEFPDEDEAPNPKEV---- 332
            P ++  PNK G DE      APN    +  ED  APNKD  E  D DEAPN   V    
Sbjct: 353 -PAEDEDPNKDGVDE------APNKDGVDAAEDE-APNKDGVEAAD-DEAPNKDGVEGVP 412

Query: 333 --NPPEDEETPNKEEAEVAEEEEAPVEAAGREKGKGEEVEEGKEEEPKPKEEEEAGLEEE 392
                E++  PNK EA     EE     A  E    +EV EGKE     K E E G EE 
Sbjct: 413 KRGVEEEDVNPNKGEA-----EELGFGVAEEEDEDDDEVLEGKE-----KAEVELGFEEG 472

Query: 393 EDERDKGDDDADDDPKEKAEVDPNEK--PVAEENGEEEEDWE-EDDPKAKPDISIDLRRK 433
             E D  D   + DP    E DPNE      EE  +E+E +E ED P  KPDI  D R +
Sbjct: 473 RGE-DPNDKPVELDPNAGVE-DPNENGDGAEEEEVDEDEGFENEDVPNGKPDIFADFRFR 492

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T8D72.2e-8767.61Major centromere autoantigen B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A2P5CJH49.1e-0937.10Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_147870 PE... [more]
A0A267F3936.8e-0432.34Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig019565g3 P... [more]
Match NameE-valueIdentityDescription
KAA0039742.14.5e-8767.61hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa] >TYK2475... [more]
PON61197.11.9e-0837.10hypothetical protein PanWU01x14_147870 [Parasponia andersonii][more]
PON85590.19.7e-0537.83hypothetical protein TorRG33x02_185920 [Trema orientale][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 362..382
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 383..400
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 363..382
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016400.1Lsi09G016400.1mRNA