Lsi09G016230 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G016230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PLATZ transcription factor family protein
Location	chr09: 24442457 .. 24442903 (+)
RNA-Seq Expression	Lsi09G016230
Synteny	Lsi09G016230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGTTCATTTAATTTGATGCCTTGGCTGGCTTTGACTACTTCTTCTTCTAATTTGTCTCTGTTTTTTTTTGTTTTTTGTTTTTGTTGCATTACAGCGCTCACTACCCATCTGGCTCCAAGCGCTTCTCAGCGAGAAATTCTTCAATGCGTGTGTGGTTCATGAAGATGCCAAAAAGAATGAAAAAAACATCTTCTGTTTTGACTGTTCCCTCGGTATTTGCCCTCACTGCTTGTCTTCTCACTCTTCTCACAAACTCCTCCAGGTAAAAATTTCAACCCATTGAACGAAAACCCATTTCTCTGTCCATCGAATTGTAATTCAATTCAGGTGGGTTTTGGTTGTTTTTGTTTTTTTGTTATGTTTCAGATTAGGCGATATGTGTATCATGATGTGATTCGATTGGACGATGCTACTAAGTTAATTGACTGTGCTTTTGTACAA

mRNA sequence

ATGGTGGCGCTCACTACCCATCTGGCTCCAAGCGCTTCTCAGCGAGAAATTCTTCAATGCGTGTGTGATGCCAAAAAGAATGAAAAAAACATCTTCTGTTTTGACTGTTCCCTCGGTATTTGCCCTCACTGCTTGTCTTCTCACTCTTCTCACAAACTCCTCCAGATTAGGCGATATGTGTATCATGATGTGATTCGATTGGACGATGCTACTAAGTTAATTGACTGTGCTTTTGTACAA

Coding sequence (CDS)

ATGGTGGCGCTCACTACCCATCTGGCTCCAAGCGCTTCTCAGCGAGAAATTCTTCAATGCGTGTGTGATGCCAAAAAGAATGAAAAAAACATCTTCTGTTTTGACTGTTCCCTCGGTATTTGCCCTCACTGCTTGTCTTCTCACTCTTCTCACAAACTCCTCCAGATTAGGCGATATGTGTATCATGATGTGATTCGATTGGACGATGCTACTAAGTTAATTGACTGTGCTTTTGTACAA

Protein sequence

MVALTTHLAPSASQREILQCVCDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ

Homology

[Close]

BLAST of Lsi09G016230 vs. ExPASy Swiss-Prot
Match: Q1G3Q4 (Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=RITF1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-18
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 24 AKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          AKKNE+N+ C DC   +CPHC+ SH  H+LLQ+RRYVYHDV+RL+D  KLIDC+ VQ
Sbjct: 27 AKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVYHDVVRLEDLQKLIDCSNVQ 83

[Close]

BLAST of Lsi09G016230 vs. ExPASy TrEMBL
Match: A0A0A0KCM1 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-26
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M +L   L    +++    CV   DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR
Sbjct: 1  MCSLPIWLQALLTEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDATKLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDATKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. ExPASy TrEMBL
Match: A0A1S3C8E3 (uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-26
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M +L   L    +++    CV   DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR
Sbjct: 1  MCSLPIWLQALLTEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDATKLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDATKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. ExPASy TrEMBL
Match: A0A6J1HHL3 (uncharacterized protein LOC111464390 OS=Cucurbita moschata OX=3662 GN=LOC111464390 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.6e-26
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M  +   L P  S++    CV   DAKKNEKNIFCFDCSLGICPHCLSSH SHKLLQIRR
Sbjct: 1  MYTVPIWLQPLLSEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHRSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDA KLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDAVKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. ExPASy TrEMBL
Match: A0A6J1KHE0 (uncharacterized protein LOC111494393 OS=Cucurbita maxima OX=3661 GN=LOC111494393 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.3e-26
Identity = 63/82 (76.83%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M AL   L    S++    CV   DAKKNEKNIFCFDCSLGICPHCLSSH SHKLLQIRR
Sbjct: 1  MYALPIWLQALLSEKFFNACVLHEDAKKNEKNIFCFDCSLGICPHCLSSHRSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDA KLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDAVKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. ExPASy TrEMBL
Match: A0A6J1H7K0 (uncharacterized protein LOC111460295 OS=Cucurbita moschata OX=3662 GN=LOC111460295 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 24 AKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          AKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ
Sbjct: 26 AKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. NCBI nr
Match: XP_038875076.1 (uncharacterized protein LOC120067605 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 64/82 (78.05%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M +L   L    S++    CV   DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR
Sbjct: 1  MRSLPIWLQALLSEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDATKLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDATKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. NCBI nr
Match: XP_008458138.1 (PREDICTED: uncharacterized protein LOC103497663 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-26
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M +L   L    +++    CV   DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR
Sbjct: 1  MCSLPIWLQALLTEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDATKLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDATKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. NCBI nr
Match: XP_011656872.1 (uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical protein Csa_005519 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-26
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M +L   L    +++    CV   DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR
Sbjct: 1  MCSLPIWLQALLTEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDATKLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDATKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. NCBI nr
Match: XP_022964357.1 (uncharacterized protein LOC111464390 [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M  +   L P  S++    CV   DAKKNEKNIFCFDCSLGICPHCLSSH SHKLLQIRR
Sbjct: 1  MYTVPIWLQPLLSEKFFNACVVHEDAKKNEKNIFCFDCSLGICPHCLSSHRSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDA KLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDAVKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. NCBI nr
Match: XP_023000095.1 (uncharacterized protein LOC111494393 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 63/82 (76.83%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MVALTTHLAPSASQREILQCVC--DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRR 60
          M AL   L    S++    CV   DAKKNEKNIFCFDCSLGICPHCLSSH SHKLLQIRR
Sbjct: 1  MYALPIWLQALLSEKFFNACVLHEDAKKNEKNIFCFDCSLGICPHCLSSHRSHKLLQIRR 60

Query: 61 YVYHDVIRLDDATKLIDCAFVQ 81
          YVYHDVIRLDDA KLIDCAFVQ
Sbjct: 61 YVYHDVIRLDDAVKLIDCAFVQ 82

[Close]

BLAST of Lsi09G016230 vs. TAIR 10
Match: AT3G60670.1 (PLATZ transcription factor family protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 23 DAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          D KKNEKNI C DC L ICPHCLSSH+SH+LLQIRRYVY DV+R++D +KL+DC+ +Q
Sbjct: 27 DDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRYVYRDVLRVEDGSKLMDCSLIQ 84

[Close]

BLAST of Lsi09G016230 vs. TAIR 10
Match: AT1G31040.1 (PLATZ transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 7.8e-20
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 25 KKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          +K+EKN+FC  C L +CPHCL SH SH LLQ+RRYVYHDV+RL D  KLIDC++VQ
Sbjct: 41 RKSEKNVFCLLCCLSVCPHCLPSHRSHPLLQVRRYVYHDVVRLSDLEKLIDCSYVQ 96

[Close]

BLAST of Lsi09G016230 vs. TAIR 10
Match: AT2G12646.1 (PLATZ transcription factor family protein )

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-19
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 24 AKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          AKKNE+N+ C DC   +CPHC+ SH  H+LLQ+RRYVYHDV+RL+D  KLIDC+ VQ
Sbjct: 27 AKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVYHDVVRLEDLQKLIDCSNVQ 83

[Close]

BLAST of Lsi09G016230 vs. TAIR 10
Match: AT2G01818.1 (PLATZ transcription factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 25 KKNEKNIFCFDCSLGICPHCLS----SHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          +KNEKN+FC DC++ IC HC +    SH  H+ LQI +YVY DVIRL +     DC+ +Q
Sbjct: 33 RKNEKNVFCIDCNVEICRHCCNTVTDSHFLHRRLQICKYVYQDVIRLLEIQNYFDCSEIQ 92

[Close]

BLAST of Lsi09G016230 vs. TAIR 10
Match: AT1G21000.1 (PLATZ transcription factor family protein )

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-11
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 23 DAKKNEKNIFCFDCS-LGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQ 81
          D+ KNE N+FC DC+    C +CL  H  H+++QIRR  YH+V+R+++  K ID A VQ
Sbjct: 36 DSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSYHNVVRVNEIQKFIDIACVQ 94

The following BLAST results are available for this feature:

BLAST of Lsi09G016230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3Q4	4.2e-18	64.91	Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi09G016230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCM1	2.5e-26	76.83	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 ...	[more]
A0A1S3C8E3	2.5e-26	76.83	uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=...	[more]
A0A6J1HHL3	5.6e-26	75.61	uncharacterized protein LOC111464390 OS=Cucurbita moschata OX=3662 GN=LOC1114643...	[more]
A0A6J1KHE0	7.3e-26	76.83	uncharacterized protein LOC111494393 OS=Cucurbita maxima OX=3661 GN=LOC111494393...	[more]
A0A6J1H7K0	1.3e-25	100.00	uncharacterized protein LOC111460295 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]

BLAST of Lsi09G016230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875076.1	4.0e-26	78.05	uncharacterized protein LOC120067605 [Benincasa hispida]	[more]
XP_008458138.1	5.2e-26	76.83	PREDICTED: uncharacterized protein LOC103497663 [Cucumis melo]	[more]
XP_011656872.1	5.2e-26	76.83	uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical ...	[more]
XP_022964357.1	1.2e-25	75.61	uncharacterized protein LOC111464390 [Cucurbita moschata]	[more]
XP_023000095.1	1.5e-25	76.83	uncharacterized protein LOC111494393 [Cucurbita maxima]	[more]

BLAST of Lsi09G016230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60670.1	2.4e-21	70.69	PLATZ transcription factor family protein	[more]
AT1G31040.1	7.8e-20	67.86	PLATZ transcription factor family protein	[more]
AT2G12646.1	3.0e-19	64.91	PLATZ transcription factor family protein	[more]
AT2G01818.1	1.0e-11	50.00	PLATZ transcription factor family protein	[more]
AT1G21000.1	3.9e-11	47.46	PLATZ transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31065	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 23..80
None	No IPR available	PANTHER	PTHR31065:SF78	SUBFAMILY NOT NAMED	coord: 23..80
None	No IPR available	SUPERFAMILY	57845	B-box zinc-binding domain	coord: 20..61
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 15..56 score: 9.214516

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016230.1	Lsi09G016230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding