Lsi09G015480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G015480
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 23595830 .. 23597042 (+)
RNA-Seq ExpressionLsi09G015480
SyntenyLsi09G015480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAAGAATGTTAATGTTTAGGCTTGATCCCTTTGCTTTTCTTTTGGAATCAACTCCTGTACTTTGTCAAGTTGGTCAAAAAGTGGATATCAAAAGCACAGCCACCACCTTAACTCTAATGCTCACACACTCTTCCCCTCACTTCATTGCTGCTCTCCAAATCTCCCATGAATTTTTCAACCTCTTTCACTCTGATCAGACTCACCATTGCAGATTTTCCCTTGAAATTTTTTACGTTATTATGTATCAAATGGAACTCCAAGGTTTTTCTTCATTGCATTTCAGTATTGTGCCACAATTAAACGCTGTCATCCTTATATTTTATGGTAATAGTTCAAGTAAGTATTCTACTCATTTTCTTGCTTCCTATATATTCAAGAATTAATTAAGAATAATAGTACTCTTTCGACTCACTCCCTTTGATGATCATTTCGTTTTTGGCTTTTCATTTGTTTTTTGTCAACTTCTACCGTGGTTTTTATTGTTTCTAACACTCTCTTTGTTAACGATTTCATTTTTCGTTTTCTGTTTTTTGAAAGTTAATGTTTGTTTTTGGATCTCGATAAGGGTTTTAAATAAACAAAAATAAGCTTTTGAAAATAACAAAACTTAAAAATTATATTGTCATTTTTAGGTCAAATTAGGTGTGTTTTTCTAGTTTCAAGAATCAAGGAATATTGGTTTCCTTTTACAAGTGTTAATAATATCGTTTCCTATTCAAGAATCAAGAATCATCCTTCCACTCCATGTTTGATACCTATTTTGATTTTTTTGTCTTGATTTTTGAAATTTGTGTTTGTTTTCATACAAACTTTTTACCATGTGATTCATCATTCTTAATATGTTGTTTTGACAATAATTTTCATTTTACGTTTTCTATTTTTTAAATTTATGCTTGCTTCGTCTCAACTTTTCGATAATGATTTTTACTCTTAAGGAAATCCTGAAATTCCTACTCAAATTTTAAAAATAAAATTAAGTTAATTTTCAAAAACTAAATGATTATTGTCATATTTAATTAGGTCCAGAACCAAAAGTGATGGCCAATTGGATTTGTTACCTTACGAAGTGGAGCTAGAAGATCATATTGATTATAGAACTTTTGTTTCAATTGATTCACGAGACTTCAAACTTGTTGTTTCAGAATTAAATGCTGATTCTGGTGATGATTTTTATATCCACAATTATTCTTCCTTGAAATCTTATATTATT

mRNA sequence

AAGGAAGAATGTTAATGTTTAGGCTTGATCCCTTTGCTTTTCTTTTGGAATCAACTCCTGTACTTTGTCAAGTTGGTCAAAAAGTGGATATCAAAAGCACAGCCACCACCTTAACTCTAATGCTCACACACTCTTCCCCTCACTTCATTGCTGCTCTCCAAATCTCCCATGAATTTTTCAACCTCTTTCACTCTGATCAGACTCACCATTGCAGATTTTCCCTTGAAATTTTTTACGTTATTATGTATCAAATGGAACTCCAAGGTTTTTCTTCATTGCATTTCAGTATTGTGCCACAATTAAACGCTGTCATCCTTATATTTTATGAAGATCATATTGATTATAGAACTTTTGTTTCAATTGATTCACGAGACTTCAAACTTGTTGTTTCAGAATTAAATGCTGATTCTGGTGATGATTTTTATATCCACAATTATTCTTCCTTGAAATCTTATATTATT

Coding sequence (CDS)

ATGTTAATGTTTAGGCTTGATCCCTTTGCTTTTCTTTTGGAATCAACTCCTGTACTTTGTCAAGTTGGTCAAAAAGTGGATATCAAAAGCACAGCCACCACCTTAACTCTAATGCTCACACACTCTTCCCCTCACTTCATTGCTGCTCTCCAAATCTCCCATGAATTTTTCAACCTCTTTCACTCTGATCAGACTCACCATTGCAGATTTTCCCTTGAAATTTTTTACGTTATTATGTATCAAATGGAACTCCAAGGTTTTTCTTCATTGCATTTCAGTATTGTGCCACAATTAAACGCTGTCATCCTTATATTTTATGAAGATCATATTGATTATAGAACTTTTGTTTCAATTGATTCACGAGACTTCAAACTTGTTGTTTCAGAATTAAATGCTGATTCTGGTGATGATTTTTATATCCACAATTATTCTTCCTTGAAATCTTATATTATT

Protein sequence

MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLFHSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSIVPQLNAVILIFYEDHIDYRTFVSIDSRDFKLVVSELNADSGDDFYIHNYSSLKSYII
Homology
BLAST of Lsi09G015480 vs. ExPASy TrEMBL
Match: A0A1S4E5E3 (uncharacterized protein LOC103503425 OS=Cucumis melo OX=3656 GN=LOC103503425 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 95/161 (59.01%), Postives = 114/161 (70.81%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           MLMFRLD FA LL+STPVLCQVG  VDIKST  TLTLMLTH SP F+AALQ+S+EFFNLF
Sbjct: 1   MLMFRLDEFALLLKSTPVLCQVGLTVDIKSTPKTLTLMLTHHSPRFVAALQMSNEFFNLF 60

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSIVPQLNAVILIFYEDH----------- 120
           + D+T H RFSLE FYV+MYQMELQ +S +HF+++P+L+AV L F ED+           
Sbjct: 61  YCDETLHLRFSLEKFYVLMYQMELQAYSLMHFTLLPELHAVFLTF-EDYNSGQKPRITTR 120

Query: 121 --------------IDYRTFVSIDSRDFKLVVSELNADSGD 137
                         IDY+ FVSIDS+DFK VV E++A S D
Sbjct: 121 QLDMLPYKVDQQLRIDYKAFVSIDSKDFKRVVLEISAHSSD 160

BLAST of Lsi09G015480 vs. ExPASy TrEMBL
Match: A0A6J1L0Z0 (uncharacterized protein LOC111498891 OS=Cucurbita maxima OX=3661 GN=LOC111498891 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 74/154 (48.05%), Postives = 96/154 (62.34%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           MLMFRLDPF  LL++  +L  V  K +IKSTA+TLTL +   + HFIA LQ+  EFFN F
Sbjct: 1   MLMFRLDPFVPLLDAIRLLSYVAPKANIKSTASTLTLSVAPPTQHFIAGLQMLPEFFNFF 60

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSIVPQLNAVILIFYEDH----------- 120
           +SD  HH R  L++  +IM +MEL+GFSS++F++   L+ V+L F E H           
Sbjct: 61  YSDDIHHSRIPLDLLCIIMDRMELRGFSSMYFALFQSLSNVLLTFQEGHEPNVMRELDLL 120

Query: 121 ---------IDYRTFVSIDSRDFKLVVSELNADS 135
                    IDY TFVSIDS DF+ V+ ELNA S
Sbjct: 121 PLEVEKIEQIDYGTFVSIDSHDFRRVLLELNAYS 154

BLAST of Lsi09G015480 vs. ExPASy TrEMBL
Match: A0A0A0K9W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.0e-25
Identity = 73/155 (47.10%), Postives = 101/155 (65.16%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           ML FR++P + LL  TPVL  +G++VDI+ +   L+LML + SP FIA LQ++HEFFNL+
Sbjct: 3   MLKFRVNPLSGLLNPTPVLSHLGEEVDIRVSPLKLSLMLPNFSPSFIAGLQMTHEFFNLY 62

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSI-VPQLNAVILIFYEDH---------- 120
            SD+T+  RFSL  FY  MY+MELQGFSS+ F++ + +L +V L F  ++          
Sbjct: 63  ISDRTYQFRFSLRKFYTFMYRMELQGFSSMLFTVDMKRLLSVYLTFENNNAKRERRRLKL 122

Query: 121 ----------IDYRTFVSIDSRDFKLVVSELNADS 135
                     I+Y TFVSIDSRDF+ + SELN+ S
Sbjct: 123 LAYDLDLDGDIEYTTFVSIDSRDFRRIASELNSRS 157

BLAST of Lsi09G015480 vs. ExPASy TrEMBL
Match: A0A1S3C901 (uncharacterized protein LOC103498007 OS=Cucumis melo OX=3656 GN=LOC103498007 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.9e-23
Identity = 68/155 (43.87%), Postives = 98/155 (63.23%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           +L FR++P + LL  TPVL  +G+ VDI+ +   L+LMLT+ SP FIA LQ+SHE FN++
Sbjct: 3   ILKFRVNPLSILLNPTPVLSHLGENVDIRVSPLKLSLMLTNFSPSFIAGLQLSHELFNVY 62

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSI-VPQLNAVILIFYED----------- 120
            SD+T+  RF++  FY  MY+MEL+GFSS+ F+I + +L  + L F ++           
Sbjct: 63  VSDRTYQFRFNIRRFYTYMYRMELRGFSSMLFTIDMKRLQTIFLTFQDNKAKRERRTLKL 122

Query: 121 ---------HIDYRTFVSIDSRDFKLVVSELNADS 135
                     I+Y TF SIDS+DFK +VSE N+ S
Sbjct: 123 LAYDLDLYGDIEYTTFFSIDSKDFKHIVSEFNSRS 157

BLAST of Lsi09G015480 vs. ExPASy TrEMBL
Match: A0A6J1H487 (uncharacterized protein LOC111460007 OS=Cucurbita moschata OX=3662 GN=LOC111460007 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = 0

Query: 35  LTLMLTHSSPHFIAALQISHEFFNLFHSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSI 94
           LTL +   + HFIAALQ+  EFFN FHSD THH R  L++  +IM +MEL+GFSS++F+I
Sbjct: 2   LTLSVAPPTRHFIAALQMLPEFFNFFHSDDTHHSRIPLDLLCIIMDRMELRGFSSMYFAI 61

Query: 95  VPQLNAVILIFYEDH--------------------IDYRTFVSIDSRDFKLVVSELNADS 135
              L+ V+L F E H                    IDY TFVSIDS DF+ V+ ELNA S
Sbjct: 62  FQSLSNVLLTFQEGHEPNVMRELDLLPLEVENIEQIDYGTFVSIDSHDFRRVLFELNAYS 121

BLAST of Lsi09G015480 vs. NCBI nr
Match: XP_016903444.1 (PREDICTED: uncharacterized protein LOC103503425 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-38
Identity = 95/161 (59.01%), Postives = 114/161 (70.81%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           MLMFRLD FA LL+STPVLCQVG  VDIKST  TLTLMLTH SP F+AALQ+S+EFFNLF
Sbjct: 1   MLMFRLDEFALLLKSTPVLCQVGLTVDIKSTPKTLTLMLTHHSPRFVAALQMSNEFFNLF 60

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSIVPQLNAVILIFYEDH----------- 120
           + D+T H RFSLE FYV+MYQMELQ +S +HF+++P+L+AV L F ED+           
Sbjct: 61  YCDETLHLRFSLEKFYVLMYQMELQAYSLMHFTLLPELHAVFLTF-EDYNSGQKPRITTR 120

Query: 121 --------------IDYRTFVSIDSRDFKLVVSELNADSGD 137
                         IDY+ FVSIDS+DFK VV E++A S D
Sbjct: 121 QLDMLPYKVDQQLRIDYKAFVSIDSKDFKRVVLEISAHSSD 160

BLAST of Lsi09G015480 vs. NCBI nr
Match: XP_023006014.1 (uncharacterized protein LOC111498891 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-25
Identity = 74/154 (48.05%), Postives = 96/154 (62.34%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           MLMFRLDPF  LL++  +L  V  K +IKSTA+TLTL +   + HFIA LQ+  EFFN F
Sbjct: 1   MLMFRLDPFVPLLDAIRLLSYVAPKANIKSTASTLTLSVAPPTQHFIAGLQMLPEFFNFF 60

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSIVPQLNAVILIFYEDH----------- 120
           +SD  HH R  L++  +IM +MEL+GFSS++F++   L+ V+L F E H           
Sbjct: 61  YSDDIHHSRIPLDLLCIIMDRMELRGFSSMYFALFQSLSNVLLTFQEGHEPNVMRELDLL 120

Query: 121 ---------IDYRTFVSIDSRDFKLVVSELNADS 135
                    IDY TFVSIDS DF+ V+ ELNA S
Sbjct: 121 PLEVEKIEQIDYGTFVSIDSHDFRRVLLELNAYS 154

BLAST of Lsi09G015480 vs. NCBI nr
Match: XP_023548338.1 (uncharacterized protein LOC111807006 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-24
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           ML FRLDPF+ LL++  +L  V  K +IKST +TLTL +   +  FI ALQ+  EFFN F
Sbjct: 1   MLTFRLDPFSPLLDAIRILSYVAPKANIKSTTSTLTLSVAPPTRRFIGALQMLPEFFNFF 60

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSIVPQLNAVILIFYEDH----------- 120
           HSD TH  R  L++  +IM +MEL+GFSS++F+I   L+ V+L F E H           
Sbjct: 61  HSDDTHQSRIPLDLLCIIMDRMELRGFSSMYFAIFQSLSNVLLTFQEGHEPNVMRELDLL 120

Query: 121 ---------IDYRTFVSIDSRDFKLVVSELNADS 135
                    IDY TFVSIDS DF+ V+ ELNA S
Sbjct: 121 PSEVENIEQIDYGTFVSIDSHDFRRVLLELNAYS 154

BLAST of Lsi09G015480 vs. NCBI nr
Match: XP_008458679.1 (PREDICTED: uncharacterized protein LOC103498007 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 6.0e-23
Identity = 68/155 (43.87%), Postives = 98/155 (63.23%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           +L FR++P + LL  TPVL  +G+ VDI+ +   L+LMLT+ SP FIA LQ+SHE FN++
Sbjct: 3   ILKFRVNPLSILLNPTPVLSHLGENVDIRVSPLKLSLMLTNFSPSFIAGLQLSHELFNVY 62

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSI-VPQLNAVILIFYED----------- 120
            SD+T+  RF++  FY  MY+MEL+GFSS+ F+I + +L  + L F ++           
Sbjct: 63  VSDRTYQFRFNIRRFYTYMYRMELRGFSSMLFTIDMKRLQTIFLTFQDNKAKRERRTLKL 122

Query: 121 ---------HIDYRTFVSIDSRDFKLVVSELNADS 135
                     I+Y TF SIDS+DFK +VSE N+ S
Sbjct: 123 LAYDLDLYGDIEYTTFFSIDSKDFKHIVSEFNSRS 157

BLAST of Lsi09G015480 vs. NCBI nr
Match: KGN45639.2 (hypothetical protein Csa_005012, partial [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 7.6e-18
Identity = 56/106 (52.83%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 1   MLMFRLDPFAFLLESTPVLCQVGQKVDIKSTATTLTLMLTHSSPHFIAALQISHEFFNLF 60
           ML FR++P + LL  TPVL  +G++VDI+ +   L+LML + SP FIA LQ++HEFFNL+
Sbjct: 3   MLKFRVNPLSGLLNPTPVLSHLGEEVDIRVSPLKLSLMLPNFSPSFIAGLQMTHEFFNLY 62

Query: 61  HSDQTHHCRFSLEIFYVIMYQMELQGFSSLHFSI-VPQLNAVILIF 106
            SD+T+  RFSL  FY  MY+MELQGFSS+ F++ + +L +V L F
Sbjct: 63  ISDRTYQFRFSLRKFYTFMYRMELQGFSSMLFTVDMKRLLSVYLTF 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4E5E31.1e-3859.01uncharacterized protein LOC103503425 OS=Cucumis melo OX=3656 GN=LOC103503425 PE=... [more]
A0A6J1L0Z01.4e-2548.05uncharacterized protein LOC111498891 OS=Cucurbita maxima OX=3661 GN=LOC111498891... [more]
A0A0A0K9W89.0e-2547.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002330 PE=4 SV=1[more]
A0A1S3C9012.9e-2343.87uncharacterized protein LOC103498007 OS=Cucumis melo OX=3656 GN=LOC103498007 PE=... [more]
A0A6J1H4872.4e-1748.33uncharacterized protein LOC111460007 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
Match NameE-valueIdentityDescription
XP_016903444.12.3e-3859.01PREDICTED: uncharacterized protein LOC103503425 [Cucumis melo][more]
XP_023006014.12.9e-2548.05uncharacterized protein LOC111498891 [Cucurbita maxima][more]
XP_023548338.14.1e-2447.40uncharacterized protein LOC111807006 [Cucurbita pepo subsp. pepo][more]
XP_008458679.16.0e-2343.87PREDICTED: uncharacterized protein LOC103498007 [Cucumis melo][more]
KGN45639.27.6e-1852.83hypothetical protein Csa_005012, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G015480.1Lsi09G015480.1mRNA