Lsi09G015450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G015450
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr09: 23563217 .. 23565961 (+)
RNA-Seq ExpressionLsi09G015450
SyntenyLsi09G015450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCTTTGTTGAAAGTTTAGACATATTTTAGAAGTTTTTAATTTGGCAAGAATATACCTTAGTCTTCCTTTCCTACCATTTTTCACAGTACCATCACCATGTTCTCGATCAAGGTTGACAACCTTGATCCTTTTCTGGATGCAACCTCTCTATTCACCGAATTTATTAACGACGAAATTTGCCTCAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTTATGCCGCATCCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCGAGGATTTCCCTCCGATGCTTTCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCAATGAGTATACATCTTCAGGAACCTCAAAATAGCATACTCCTTAAATTTGAGCCTTCAAGTTAGTATACAATAATACCCTTTTTCCTCTCTTTATTCTCTTCAAAAATGAATCAATAGATGCTCTTTTGTTTTCTATTTTTCAACTTTTTTTTTGTCATTTCTTGATTCGAATTTATTTATGAACATGTTTGATCATCAATGCTAATTTGTGTGGATTTTTGTTTTCATCACATCAAATACTTTAGAGTTTTGTTTTTTATGCGTTCAAATACCATGATCTTAGTCCTTGTATTTTGAATTAATACATTTTAATTAGTTCTTGTACTTTCAATAAAATCTCAAATTTAATTCTAGTTGTTAGTTTGTTGATATGTCAATTCAGTGATTCAAATTATTGTTATTAGATGATATGAGATTAAATTTGTCTTCAACCCATTAACTATTTAAGATAATATTAAGAGCAGGTAATTAACTTTTGTTATGCTGGTAATAAACTTTTCCCCATATAACTTTTCTTTTTACTGTTTTAATATCACTTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTTTTGCCCATGGAAGATTGGTCTCCTAGCCAAGTTAGCTTAAATGGAAAATTTTTCTCCATTGAGTCAGAAATGTTTAGCAATATTTTATCAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGCAACTCTTCTTTCCTTTTTCATATCTATTTTTACTTGAAGGAAAGCGCGGTGTATATGTTACTAAAACCTTCCTTCATTTGTCACAGTTTTGATTAATTCAAAGGGTTCACAACTCACATTCTCTGTGGTTCCATTTGAGGAGATAATTATTACAGAAGAGGTATGTTTTGTGAATTTTGTGTAAAAAAATTATTTCAATCATTTACATTAGGGAAATTTTCAGAAATAGAAAAAATGTCAAACTATTTACAGAAAATAGCAAACAAAACACTGATAAACATTGATAGACTTCTATCAACATCTATTAATGATATACTTCTATCATTTCTATCACTGATAGACCCTAATAGACTCCTGATAGACTTCTATCAGCGTTTATTACAACTATCTAAAAATTTTGCTATTTTGTGTAAATGATAGAAGTTTATCATTAGTAGATGCTGATAGAAGTCTATCAATGTCTATTAGTATTTTTTTGCTATTTTTTGTAAATAGTTTGACATTTTTTCTATATTTGAAAATTTTCCTTATTTTTTTTAGGGAAAAAAATACTTTTTTTTCGTCCTGATCCGGTTTTAGGTTTCATTTCCTATTAATCCTTAGGTTTCAAAATGTTAGGGGTGTTTGGCTCACTGACGCTTTTATCAAACAATAGGGACTAAATCATAATCATAAACCATAAGAACTAAATTCTAATTTTCTCTAAACTATAGGGAACAAATTTGTGAACACTTTTTGTTGAATTTATTGATGAATAAAGAAGTAGTTGGACAAAATGTTGTGCAGAGTGGAGATTGTTTGATTATAGGTGATAAAGAAGTTGAAACTCAAATACATATGCCTCTCCATCCATCCTCATTTTTCAGTCATTGTGGACTTCAAGCTCGAAGGGTATGGTTCTTCGAAACAACTGATTCTTGTGCAATAATCCATTTCCCTTTTCAAGTCTATGCTCATTTTTTGATGATTTGTTTTCCCTTTGCAAATGTAAACTCCTCTCAAGATTAACTCACACTCACTAAAAAAAATTAAAGATATCTAGTAGTCTTAGTTGGGATCATTTTGTGTACTATGATACAACTTCTCTTGGCAATATTATAACCTTTAATTTTGTCATTTCTATTCAAGTATTATTAGAGGTCTAATCTCTTTATCATTCTTAATTATGAACAAAAGTTACAAAATTAATTCATAAACAATTAGCATTTGTGGTAATTAATTCGATTTTACTTCAAAAACATAGAATATTTAGTTTTTTGGGATATGATGAGAGTGCTAAGAGTATGTCAACCTAGTTGAGATGTTCCGTTATGCACCTACTGATCCCATCTGCCTTTTGTACATTTGTTCAATTTTTTTTTTTTTTGGTAGATTAACCCTTTTATCAAACTCTAATTATGTATCCTTTTTTGTAAAGTTTAATTTTTGTAGTAATGGGTTGAAACTTTAAGAAACCTACGTTTCATTATTAAGATTTTTTTTGAGAATGCATCAGGTCTTCGGATTAACGTCGATAAATCCACTTTCTCTGGGATTAACGTGACCAATGGTGATCTTCCAAGACTATTGAGACCAACTATTCCTCCACTGCTCCTATGCTAATTTTATTTACAACAACATATTTGATCTCTCCACTCGCACTTATCGATCGGTTGAATATTTGGCTCGAG

mRNA sequence

ATGGTTACCATCACCATGTTCTCGATCAAGGTTGACAACCTTGATCCTTTTCTGGATGCAACCTCTCTATTCACCGAATTTATTAACGACGAAATTTGCCTCAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTTATGCCGCATCCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCGAGGATTTCCCTCCGATGCTTTCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCAATGAGTATACATCTTCAGGAACCTCAAAATAGCATACTCCTTAAATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTTTTGCCCATGGAAGATTGGTCTCCTAGCCAAGTTAGCTTAAATGGAAAATTTTTCTCCATTGAGTCAGAAATGTTTAGCAATATTTTATCAACATTTTCTGTCTACAATGAAGTTGATACAAGTCTTCGGATTAACGTCGATAAATCCACTTTCTCTGGGATTAACGTGACCAATGGTGATCTTCCAAGACTATTGAGACCAACTATTCCTCCACTGCTCCTATGCTAATTTTATTTACAACAACATATTTGATCTCTCCACTCGCACTTATCGATCGGTTGAATATTTGGCTCGAG

Coding sequence (CDS)

ATGGTTACCATCACCATGTTCTCGATCAAGGTTGACAACCTTGATCCTTTTCTGGATGCAACCTCTCTATTCACCGAATTTATTAACGACGAAATTTGCCTCAAATTCTCGCCATCGACGTTCTCGATAATTGCTCGGTACCAATGCCCTCCCTTCTTTGCAATGATGTTTATGCCGCATCCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCGAGGATTTCCCTCCGATGCTTTCACAATGCTTTGTTGGAAGGCCAAAGCTATTCCTCAATGAGTATACATCTTCAGGAACCTCAAAATAGCATACTCCTTAAATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTTTTGCCCATGGAAGATTGGTCTCCTAGCCAAGTTAGCTTAAATGGAAAATTTTTCTCCATTGAGTCAGAAATGTTTAGCAATATTTTATCAACATTTTCTGTCTACAATGAAGTTGATACAAGTCTTCGGATTAACGTCGATAAATCCACTTTCTCTGGGATTAACGTGACCAATGGTGATCTTCCAAGACTATTGAGACCAACTATTCCTCCACTGCTCCTATGCTAA

Protein sequence

MVTITMFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRPSALPLHHELTFLPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTSLRINVDKSTFSGINVTNGDLPRLLRPTIPPLLLC
Homology
[Close]
BLAST of Lsi09G015450 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 3.1e-49
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0 

Query: 6   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAE 65
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFS+IARYQCP FFAM+FMPHPLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 66  YSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPS 113
           YSVDRNHISRISLRCF NALLEGQSYSSMSIHL+EPQN+IL KFEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]
BLAST of Lsi09G015450 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.6e-48
Identity = 102/162 (62.96%), Postives = 125/162 (77.16%), Query Frame = 0 

Query: 6   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAE 65
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFSIIARYQ P FFAM+F+P PLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 66  YSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRPSALPLHHELTF 125
           Y V R+HI R+SL   H AL  GQ+YSS+ IHLQE QN I L FEPSR S +P+  ++ F
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 126 -LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTS 167
            +PMEDWS  ++  + K FSIES++F +I++TF  YNEVDTS
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTS 162

[Close]
BLAST of Lsi09G015450 vs. ExPASy TrEMBL
Match: A0A5A7TVD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001420 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.1e-29
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 0 

Query: 55  MMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRP 114
           MM MP PLFAEYSVDRNHIS +SL   HNAL++G+++++++I ++E QN I L FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 115 SALPLHHELTF-LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTSL 168
           S LPL+ ELTF +PMEDWSP  V  +GK FSIESE+F++I+  FS +NE D  L
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAIL 114

[Close]
BLAST of Lsi09G015450 vs. ExPASy TrEMBL
Match: A0A5D3DSC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00490 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.1e-29
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 0 

Query: 55  MMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRP 114
           MM MP PLFAEYSVDRNHIS +SL   HNAL++G+++++++I ++E QN I L FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 115 SALPLHHELTF-LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTSL 168
           S LPL+ ELTF +PMEDWSP  V  +GK FSIESE+F++I+  FS +NE D  L
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAIL 114

[Close]
BLAST of Lsi09G015450 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 0 

Query: 6   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAE 65
           MF +K+ N DP LDATS F +   D+  +KF+PS F II+ ++ P F A + +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 66  YSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRPSALPLHHELTF 125
           +SVD +H S++SL  FH+A+L+G S++SM+IHL +  N I+L+F+       PLHHEL  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 126 LP--MEDWSPSQVSLN-GKFFSIESEMFSNILSTFSVY 161
            P   ED    Q  L+ GK+F ++S+    I+    ++
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIF 158

[Close]
BLAST of Lsi09G015450 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-50
Identity = 105/163 (64.42%), Postives = 130/163 (79.75%), Query Frame = 0 

Query: 6   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAE 65
           MFSIK+D++DPFLDAT LF E  +DEICLKF PST SII RY+CP FF  M +P PLF E
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 66  YSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRPSALPLHHELTF 125
           YSVDRNHISRISL  F++ALLE Q++++++IHLQE QN ILL FEPS PS LPL+ ELTF
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSPSTLPLNRELTF 120

Query: 126 -LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTSL 168
            +PMEDWS +QV+ +GK FSIES++F +I+  FS + E +T L
Sbjct: 121 VVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTIL 163

[Close]
BLAST of Lsi09G015450 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 6.4e-49
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0 

Query: 6   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAE 65
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFS+IARYQCP FFAM+FMPHPLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 66  YSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPS 113
           YSVDRNHISRISLRCF NALLEGQSYSSMSIHL+EPQN+IL KFEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]
BLAST of Lsi09G015450 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.4e-48
Identity = 102/162 (62.96%), Postives = 125/162 (77.16%), Query Frame = 0 

Query: 6   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSIIARYQCPPFFAMMFMPHPLFAE 65
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFSIIARYQ P FFAM+F+P PLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 66  YSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRPSALPLHHELTF 125
           Y V R+HI R+SL   H AL  GQ+YSS+ IHLQE QN I L FEPSR S +P+  ++ F
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 126 -LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTS 167
            +PMEDWS  ++  + K FSIES++F +I++TF  YNEVDTS
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTS 162

[Close]
BLAST of Lsi09G015450 vs. NCBI nr
Match: KAA0047513.1 (hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 0 

Query: 55  MMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRP 114
           MM MP PLFAEYSVDRNHIS +SL   HNAL++G+++++++I ++E QN I L FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 115 SALPLHHELTF-LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTSL 168
           S LPL+ ELTF +PMEDWSP  V  +GK FSIESE+F++I+  FS +NE D  L
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAIL 114

[Close]
BLAST of Lsi09G015450 vs. NCBI nr
Match: TYK26483.1 (hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 0 

Query: 55  MMFMPHPLFAEYSVDRNHISRISLRCFHNALLEGQSYSSMSIHLQEPQNSILLKFEPSRP 114
           MM MP PLFAEYSVDRNHIS +SL   HNAL++G+++++++I ++E QN I L FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 115 SALPLHHELTF-LPMEDWSPSQVSLNGKFFSIESEMFSNILSTFSVYNEVDTSL 168
           S LPL+ ELTF +PMEDWSP  V  +GK FSIESE+F++I+  FS +NE D  L
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAIL 114

The following BLAST results are available for this feature:
BLAST of Lsi09G015450 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi09G015450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIE03.1e-4992.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1[more]
A0A0A0KB762.6e-4862.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1[more]
A0A5A7TVD76.1e-2958.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DSC26.1e-2958.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K9021.5e-2239.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1[more]
BLAST of Lsi09G015450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031736681.11.2e-5064.42uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact... [more]
KGN61523.16.4e-4992.52hypothetical protein Csa_006491 [Cucumis sativus][more]
KGN45637.15.4e-4862.96hypothetical protein Csa_005027 [Cucumis sativus][more]
KAA0047513.11.3e-2858.77hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa][more]
TYK26483.11.3e-2858.77hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa][more]
BLAST of Lsi09G015450 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 4..186
e-value: 2.1E-12
score: 48.9
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 6..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G015450.1Lsi09G015450.1mRNA