Lsi09G015300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G015300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SWIM-type domain-containing protein
Location	chr09: 23414202 .. 23416817 (-)
RNA-Seq Expression	Lsi09G015300
Synteny	Lsi09G015300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTACTCTCCCGGCGGAATGGCTAGCAGTGTGCAGAGGAGCCCTCGGTTGGATCAGATCCATGGCGAAATTCACGACAGTTTTCGTGCCATTCCGTATGTTCCTTAACCACGCCCCTCTCTATTTAGTGATTGTTTCTGATTATATTGCCTTGTTGTTGGTTTTATATATGCATTAAACACTTCCAATGACAATGGTTGCTGTCTCGTATAATTATCAATTTTTATGTTCAGGGACCCTTCAAGCCTTTGATTCTGTTTGGTCTCTCACACCTTCATTGAAGTGTGGTTTTGTGGATTAGTAGACCTTTCTTTTTTTCTTTTTTTCTTTTTTTTTTTCCCCTGTTAAATTAATGTTTACGAAAAACTATTTCATTGACCGAATGGAGGGGAGAAGAAGATCTCATTCCAACAATGGAATTTAAGAAAAGACGTCTGGTTAGCACATTGATTTGTTAGGCTAGGTCAGTGGACCCCGTTTTAAACATTTGTTTTGGGAAAAAATGGGAGTATTTCATTGATAAATGACGATGTAGTGTCTTTTAGGAAATATTGTTTTGTTTCCTTTCTTTTTGTATTCTTTGGGAGTTCTTGAGTTCTTTAAACACTCTCCTGGTTAGTTCTTTTACCTTTTGTTAACCTTTTACCTCTTGGTAATAGTTTAAGAGATGTAATTTTTCTTTAGCTTCTATTTTATTTCTTTACCTCGGGTAATAAGGTAAAGTTAGTTTGTATTCGCAGTTTTCAGCCTATAAATCAGGCTGATTACTTTCAGTTGAAGTTAATAAGAAGTTATCATTTCTTTGAGAACTTTGTCCTCACCAAATGAAACGACCCCCAAAGGTGCATTGCAAAAATGATCTTCAATCATGAAGAAAGACTATATCTTTGGCTGTTTAGAAGTGTAACCAAATCCTTTTTGAAAAAGACTATGTATGAAGATACTCCAAGTTAAAGCAAGAAAAGAAGTAGAATAAACAAAAGATTGTATGCTTTGTTGTTAATCTATGAAGAGGCGAGTATTTATTTTGAGCCATAAGTTTCAATAGAAAGTGTAGATAAAGTTCCTCGTCTTCCATAGGATTTTTCTCTCGTTTTTGAACGGGTGTCCATTAGGGGACACATCAAGGAGGGTGAAGAAATCCTTAGGTCTTGTGAAGCGGTAGTGATGTAGCCTAAATAGCCTCAAAGAGTAATCCTCCAAGAATCAAGCTTGTGAATCTTTTATTAGAATGATCATGTCAAGGGGGAAAAGACTCATATTTATAGACTTTATTATAAGTGGAGTAAAAAGGGAATTAAGGTAGAATATTATTCAATTAATCTTGTACTTCCTACATCATTCTACCCCTCCAAAAAGAAAACTTGTCCTCGAGTTTAAAAAAAAAAATGAAACAAATAAGGAACGAAATAAACTCGTTCGACGGAATATGACCAAACCAACCTCCTACATCTTGAACAAAAATATTTTGATCAAAAAATGTTCTGATCAAAGGGGTAATTTCGAGACAGAAAATCCAACATTGCCACCAAAAACTGAACTTTTCCATCGGCCATAAACTCAAAAAAGATGTTTTTTTTTTTGGGATAAAAACAATAACTTTCATTGAGAAAAAAATGAAAGAATACACGGGCATGAAAAGAAAAAAAACCCAACCCTGTAGAAAGGGGCTCCAACTATGCAAAATAATATCTACAGAATAATTACAAAAGATCTTCGAAACTGAAGCCTCGCACTGCCAGAGAATATAATCCAGATCTTCCTCCGCCTTTCGACAAAGGGTACAACAGAATGGCCCAACAAGCAAGGAGAGTTTCCTGAAAAGACGATCCATCGTATTCGCACGACCATAAAGAACTTGCCAGGTAAAGAATCTCACTTTCTTAGGAACCTTAATCCTCCAAAGGATTGAAAAGACGGACTCACCTAAGGGAGAGGGATCCACGAGACTATGAAAAAAGGGCTTGCACGAGAACCCCTCCAAAGGATTGGGGCTCTAGACCCTCACATCCCTTCTCCCTCACCTAAAAGAGTGACCCTCAAGCAAAGCAAGAAAAGAAGCCATGTCAGTCGCCTCCCTATTGGAAAGGGGGTGATGAAAGTCGAACGAGAAGGAAAAAGAGTCTCCCCGACCACACAAGGAAATTAGCAACAAGGGCTACCACCCTCGATAAACCTATCAATCCTACTTCTCGCTCTACTATTGGCCCAAGTAAACTTCCCATTCAGCAAAGGAGGATCAACTAGCCTACCACCCTTGATAAACCTATTAAAATTCTATGTAGATCTAGTGCCTTTCCCTACTGGGGCCCTCTCTTCTTGGGAACAAGTTAAGTTAAAATCACTAGCTAAACCCTAGTTCGAACGACAAAGACCAAAAGGATCCCCTAACTCATCCAAGAAAGCAACTCTCCCTCTAGATCTAGAAGGACCATACACACCCGTCACCCAACAGCTTTCGCCCCGTGGTATCCTAATCAAAACTGAAAGGGAGAAGACTCCTCCAGCCACCTCCATAGCGACAGCTTACGACTATTCCACATCATCAAAATGCCTTTGGACTTCCTTACAGAATCAAGACTCTCCCGTTCCACCCTTCTTGACCTTCAGATGCTAC

mRNA sequence

TTTACTCTCCCGGCGGAATGGCTAGCAGTGTGCAGAGGAGCCCTCGGTTGGATCAGATCCATGGCGAAATTCACGACAGTTTTCGTGCCATTCCGTATTTCGAACGACAAAGACCAAAAGGATCCCCTAACTCATCCAAGAAAGCAACTCTCCCTCTAGATCTAGAAGGACCATACACACCCGTCACCCAACAGCTTTCGCCCCGTGGTATCCTAATCAAAACTGAAAGGGAGAAGACTCCTCCAGCCACCTCCATAGCGACAGCTTACGACTATTCCACATCATCAAAATGCCTTTGGACTTCCTTACAGAATCAAGACTCTCCCGTTCCACCCTTCTTGACCTTCAGATGCTAC

Coding sequence (CDS)

ATGGCTAGCAGTGTGCAGAGGAGCCCTCGGTTGGATCAGATCCATGGCGAAATTCACGACAGTTTTCGTGCCATTCCGTATTTCGAACGACAAAGACCAAAAGGATCCCCTAACTCATCCAAGAAAGCAACTCTCCCTCTAGATCTAGAAGGACCATACACACCCGTCACCCAACAGCTTTCGCCCCGTGGTATCCTAATCAAAACTGAAAGGGAGAAGACTCCTCCAGCCACCTCCATAGCGACAGCTTACGACTATTCCACATCATCAAAATGCCTTTGGACTTCCTTACAGAATCAAGACTCTCCCGTTCCACCCTTCTTGACCTTCAGATGCTAC

Protein sequence

MASSVQRSPRLDQIHGEIHDSFRAIPYFERQRPKGSPNSSKKATLPLDLEGPYTPVTQQLSPRGILIKTEREKTPPATSIATAYDYSTSSKCLWTSLQNQDSPVPPFLTFRCY

Homology

[Close]

BLAST of Lsi09G015300 vs. ExPASy TrEMBL
Match: A0A1S3C8R6 (uncharacterized protein LOC103497748 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497748 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MASSVQRSPRLDQIHGEIHDSFRAIPY 28
          MASSVQRSP+LDQIHGEI DSFRAIPY
Sbjct: 1  MASSVQRSPQLDQIHGEIRDSFRAIPY 27

[Close]

BLAST of Lsi09G015300 vs. ExPASy TrEMBL
Match: A0A1S3C712 (uncharacterized protein LOC103497748 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497748 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MASSVQRSPRLDQIHGEIHDSFRAIPY 28
          MASSVQRSP+LDQIHGEI DSFRAIPY
Sbjct: 1  MASSVQRSPQLDQIHGEIRDSFRAIPY 27

[Close]

BLAST of Lsi09G015300 vs. ExPASy TrEMBL
Match: A0A0A0KCW9 (SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G001720 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.0e-04
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  MASSVQRSPRLDQIHGEIHDSFRAIPY 28
          MASSVQRSPRLDQIHGEI DSFR IPY
Sbjct: 1  MASSVQRSPRLDQIHGEIRDSFRPIPY 27

[Close]

BLAST of Lsi09G015300 vs. NCBI nr
Match: XP_038906599.1 (uncharacterized protein LOC120092551 isoform X1 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MASSVQRSPRLDQIHGEIHDSFRAIPY 28
          MASSVQRSPRLDQIHGEI DSFRA+PY
Sbjct: 1  MASSVQRSPRLDQIHGEIRDSFRALPY 27

[Close]

BLAST of Lsi09G015300 vs. NCBI nr
Match: XP_008458284.1 (PREDICTED: uncharacterized protein LOC103497748 isoform X2 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MASSVQRSPRLDQIHGEIHDSFRAIPY 28
          MASSVQRSP+LDQIHGEI DSFRAIPY
Sbjct: 1  MASSVQRSPQLDQIHGEIRDSFRAIPY 27

[Close]

BLAST of Lsi09G015300 vs. NCBI nr
Match: XP_008458283.1 (PREDICTED: uncharacterized protein LOC103497748 isoform X1 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  MASSVQRSPRLDQIHGEIHDSFRAIPY 28
          MASSVQRSP+LDQIHGEI DSFRAIPY
Sbjct: 1  MASSVQRSPQLDQIHGEIRDSFRAIPY 27

The following BLAST results are available for this feature:

BLAST of Lsi09G015300 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G015300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8R6	3.8e-04	92.59	uncharacterized protein LOC103497748 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C712	3.8e-04	92.59	uncharacterized protein LOC103497748 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KCW9	5.0e-04	92.59	SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G001720 P...	[more]

BLAST of Lsi09G015300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906599.1	4.6e-04	92.59	uncharacterized protein LOC120092551 isoform X1 [Benincasa hispida]	[more]
XP_008458284.1	7.9e-04	92.59	PREDICTED: uncharacterized protein LOC103497748 isoform X2 [Cucumis melo]	[more]
XP_008458283.1	7.9e-04	92.59	PREDICTED: uncharacterized protein LOC103497748 isoform X1 [Cucumis melo]	[more]

BLAST of Lsi09G015300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G015300.1	Lsi09G015300.1	mRNA