Lsi09G015080 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAAGTTAGGATCCACCTAATTACCTTGTTTTTTCTTGCATCAGTTGGTGTTGGCGTCAGCATATCAAATGAACGTGGCAATCAAACTTTAAATCTGCATCCTCTGCCTGCCATCTACTCTTCTCATACATTTACCAACTCCAAGCAGTAGCCTATAAAAAGGGCACAAGTGAGGTTCAAAGCCATATCATTACAACGGTTGAAAAGTAAATATCAAACCATGGGAGAATATGGTATAAGCATTACCGCCGCAGTTGTCAGCTTCCTCATCATCCTCCATCTGCCAACTCATTGTAATGCAATTGTCAGAAAGGCAAATAATTCCATTCCCCAAGAAGATGTTGATCTTATAGAATTCGCACTGAATTTAGAGTATCTAGAAGCCGAACTCTTCTTATATGGTCCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCCCCCATTGGTGCTAAAATGGCTAACTTGGGTCCTTTCATCAAGGACATCATATTGCAATTTGGCTACCAGGAAGTTGGTCACTTGAGGTATTTTTTTTTTCTAGTTGACATCCACTGACTTTTTACTGTCATATGAGTCTCTGCAAGTCATTTCACATCACACATTTATGTAGGGCAATAAAAAATAGAGTCGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCAGCGACATTTGCCAAAGTGATGGACAAAGCATTTGATCGTCAGTTGAAACCACCTTTTGACCCTTATGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTTATTCCTTATGTTGGACTCACTGGGTATGTTGGAGCAAATCCAAGACTCGAATCTGCTGTCGCCAAGAAGGTATTCTAATAGAACCCAAACAAAACTAGAATTATATTGCAATGTAAAAGATGAACTTACAAGATAAACTAAGTATTTCAGAAATTTGGACCTGAGATCACTCAAGCCATAAACCAACTGAATCAGCGTCTAAAGTCCTCCTTTCCGAAACTCCATACCAACCTTTCCAACTAATCACTAACGTACCTTTATAATATCCCTAAGAATGCTTAGATTCCTATTATATTCCCTGAAATTCAAAGATAAATTTAATGCTTACATACATACATAACACTAACCACAATTCTACGAGCCAATGTTTCAGCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTAATCAGAACGCTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATATGGAGTGACAGTGGCAGAGTTCACGGAGCGCATTTCAGATCTGCGGAATAAATTAGGACGTGCAGGTATAAAAGATGAAGGCATTGTGGTACCCGAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAAATCAGAACTCACTCGCATATCCAAGAACGCCCGAGGAGATTTTAAGGATTGTGTATGGTGGAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCAAAGGGAGCCGATGGCCACATAGCTAAATCCAATGCACTTAGCAAATAATGCTGTTCTAGATGTTTTCTACTTCTAGATCATCAATAAAGAGGATTTCACTTGCTTTATCATGGAGTCATCCTTCTCCTCCCAGCTCATCTATCGTTCTATCACAATATAGGTGTTTTTAGTTACTATTCCACAGATAGAAGTCTCTTCTGTATTCTATTTCATCAATCAATGAAACGGTTTCCCTTTCCTATTTATAAAAATAAAATTCCAATAGTAATCACGATTT GGAAGTTAGGATCCACCTAATTACCTTGTTTTTTCTTGCATCAGTTGGTGTTGGCGTCAGCATATCAAATGAACGTGGCAATCAAACTTTAAATCTGCATCCTCTGCCTGCCATCTACTCTTCTCATACATTTACCAACTCCAAGCAGTAGCCTATAAAAAGGGCACAAGTGAGGTTCAAAGCCATATCATTACAACGGTTGAAAAGTAAATATCAAACCATGGGAGAATATGGTATAAGCATTACCGCCGCAGTTGTCAGCTTCCTCATCATCCTCCATCTGCCAACTCATTGTAATGCAATTGTCAGAAAGGCAAATAATTCCATTCCCCAAGAAGATGTTGATCTTATAGAATTCGCACTGAATTTAGAGTATCTAGAAGCCGAACTCTTCTTATATGGTCCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCCCCCATTGGTGCTAAAATGGCTAACTTGGGTCCTTTCATCAAGGACATCATATTGCAATTTGGCTACCAGGAAGTTGGTCACTTGAGGGCAATAAAAAATAGAGTCGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCAGCGACATTTGCCAAAGTGATGGACAAAGCATTTGATCGTCAGTTGAAACCACCTTTTGACCCTTATGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTTATTCCTTATGTTGGACTCACTGGGTATCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTAATCAGAACGCTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATATGGAGTGACAGTGGCAGAGTTCACGGAGCGCATTTCAGATCTGCGGAATAAATTAGGACGTGCAGGTATAAAAGATGAAGGCATTGTGGTACCCGAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAAATCAGAACTCACTCGCATATCCAAGAACGCCCGAGGAGATTTTAAGGATTGTGTATGGTGGAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCAAAGGGAGCCGATGGCCACATAGCTAAATCCAATGCACTTAGCAAATAATGCTGTTCTAGATGTTTTCTACTTCTAGATCATCAATAAAGAGGATTTCACTTGCTTTATCATGGAGTCATCCTTCTCCTCCCAGCTCATCTATCGTTCTATCACAATATAGGTGTTTTTAGTTACTATTCCACAGATAGAAGTCTCTTCTGTATTCTATTTCATCAATCAATGAAACGGTTTCCCTTTCCTATTTATAAAAATAAAATTCCAATAGTAATCACGATTT ATGGGAGAATATGGTATAAGCATTACCGCCGCAGTTGTCAGCTTCCTCATCATCCTCCATCTGCCAACTCATTGTAATGCAATTGTCAGAAAGGCAAATAATTCCATTCCCCAAGAAGATGTTGATCTTATAGAATTCGCACTGAATTTAGAGTATCTAGAAGCCGAACTCTTCTTATATGGTCCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCCCCCATTGGTGCTAAAATGGCTAACTTGGGTCCTTTCATCAAGGACATCATATTGCAATTTGGCTACCAGGAAGTTGGTCACTTGAGGGCAATAAAAAATAGAGTCGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCAGCGACATTTGCCAAAGTGATGGACAAAGCATTTGATCGTCAGTTGAAACCACCTTTTGACCCTTATGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTTATTCCTTATGTTGGACTCACTGGGTATCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTAATCAGAACGCTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATATGGAGTGACAGTGGCAGAGTTCACGGAGCGCATTTCAGATCTGCGGAATAAATTAGGACGTGCAGGTATAAAAGATGAAGGCATTGTGGTACCCGAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAAATCAGAACTCACTCGCATATCCAAGAACGCCCGAGGAGATTTTAAGGATTGTGTATGGTGGAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCAAAGGGAGCCGATGGCCACATAGCTAAATCCAATGCACTTAGCAAATAA MGEYGISITAAVVSFLIILHLPTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGYLVAGLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKSNALSK Homology
BLAST of Lsi09G015080 vs. ExPASy Swiss-Prot
Match: P22242 (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 1.1e-87 Identity = 166/291 (57.04%), Postives = 204/291 (70.10%), Query Frame = 0
BLAST of Lsi09G015080 vs. ExPASy TrEMBL
Match: A0A0A0KF49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324880 PE=4 SV=1) HSP 1 Score: 511.1 bits (1315), Expect = 3.0e-141 Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 0
BLAST of Lsi09G015080 vs. ExPASy TrEMBL
Match: A0A5D3BXK9 (Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00500 PE=4 SV=1) HSP 1 Score: 509.6 bits (1311), Expect = 8.7e-141 Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 0
BLAST of Lsi09G015080 vs. ExPASy TrEMBL
Match: A0A1S3C876 (desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC103497774 PE=4 SV=1) HSP 1 Score: 509.6 bits (1311), Expect = 8.7e-141 Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 0
BLAST of Lsi09G015080 vs. ExPASy TrEMBL
Match: A0A6J1L2P1 (desiccation-related protein PCC13-62-like OS=Cucurbita maxima OX=3661 GN=LOC111499294 PE=4 SV=1) HSP 1 Score: 471.1 bits (1211), Expect = 3.4e-129 Identity = 235/305 (77.05%), Postives = 264/305 (86.56%), Query Frame = 0
BLAST of Lsi09G015080 vs. ExPASy TrEMBL
Match: A0A6J1H409 (desiccation-related protein PCC13-62-like OS=Cucurbita moschata OX=3662 GN=LOC111460222 PE=4 SV=1) HSP 1 Score: 463.0 bits (1190), Expect = 9.4e-127 Identity = 230/305 (75.41%), Postives = 262/305 (85.90%), Query Frame = 0
BLAST of Lsi09G015080 vs. NCBI nr
Match: XP_038875467.1 (desiccation-related protein PCC13-62-like [Benincasa hispida]) HSP 1 Score: 517.3 bits (1331), Expect = 8.6e-143 Identity = 259/309 (83.82%), Postives = 277/309 (89.64%), Query Frame = 0
BLAST of Lsi09G015080 vs. NCBI nr
Match: XP_004148796.2 (LOW QUALITY PROTEIN: desiccation-related protein PCC13-62 [Cucumis sativus]) HSP 1 Score: 510.0 bits (1312), Expect = 1.4e-140 Identity = 259/310 (83.55%), Postives = 271/310 (87.42%), Query Frame = 0
BLAST of Lsi09G015080 vs. NCBI nr
Match: XP_008458324.1 (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo] >TYK02966.1 desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa]) HSP 1 Score: 509.6 bits (1311), Expect = 1.8e-140 Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 0
BLAST of Lsi09G015080 vs. NCBI nr
Match: XP_023006619.1 (desiccation-related protein PCC13-62-like [Cucurbita maxima]) HSP 1 Score: 471.1 bits (1211), Expect = 7.1e-129 Identity = 235/305 (77.05%), Postives = 264/305 (86.56%), Query Frame = 0
BLAST of Lsi09G015080 vs. NCBI nr
Match: XP_023548155.1 (desiccation-related protein PCC13-62-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 465.7 bits (1197), Expect = 3.0e-127 Identity = 231/305 (75.74%), Postives = 263/305 (86.23%), Query Frame = 0
BLAST of Lsi09G015080 vs. TAIR 10
Match: AT1G47980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 375.2 bits (962), Expect = 4.9e-104 Identity = 188/274 (68.61%), Postives = 215/274 (78.47%), Query Frame = 0
BLAST of Lsi09G015080 vs. TAIR 10
Match: AT3G62730.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 307.0 bits (785), Expect = 1.7e-83 Identity = 160/272 (58.82%), Postives = 190/272 (69.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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