Lsi09G014850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G014850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger CCHC domain-containing protein 10
Location	chr09: 22901875 .. 22902669 (+)
RNA-Seq Expression	Lsi09G014850
Synteny	Lsi09G014850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCCGAAAGGATTAAGGCTGCGGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCCGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAAATGTATTTGATGAGTACTGAAAAGGCAGTCAGATTGGGTGAAAGAAAGGACATTAAGGTCTCTATGTCGAGTGCTGGTGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGATGGGACACTGGACCTATGAATGCAAAAACGAACGAGTTTACATATCCCGACCATCTCGAACTCAACAACTCAAAAACCCGAAACTGAGGATGAAGATGGCAGTCTCATTGGAGTTGGACAACCCAGATTCTGGTGAGGAGAAGAAGCCCAAGAAGCATTCAAAGAAGAAAAGTAAAAGAAAGCATCGGTCCGATGCAAAATCCAATAGCGATAGTGAGGCCTCTGTATTTGAGACTGACAGTGGTTCATCATCAGTTACTGAATCTGATGATTCTTCCGAAGAAAGCAGTTCAGATTACAGTTCTTCGTCCGAATCAGAGTCGGAAAGGAGTCGAAGAAGGAGAAAGAAGCAGAAGAGGGGGAGAAGAAAGAGGAGGTACAGTTCGTCTTCTGATTCTTCTGATTCAGACTCAGGGTCTGAATCAGAGTCTGATTCCGACAATGAACGTAGTAGGAGGAAGAGCCGAAGACACAGCAGAAAACGCTAG

mRNA sequence

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCCGAAAGGATTAAGGCTGCGGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCCGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAAATGTATTTGATGAGTACTGAAAAGGCAGTCAGATTGGGTGAAAGAAAGGACATTAAGGTCTCTATGTCGAGTGCTGGTGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGATGGGACACTGGACCTATGAATGCAAAAACGAACGAGTTTACATATCCCGACCATCTCGAACTCAACAACTCAAAAACCCGAAACTGAGGATGAAGATGGCAGTCTCATTGGAGTTGGACAACCCAGATTCTGGTGAGGAGAAGAAGCCCAAGAAGCATTCAAAGAAGAAAAGTAAAAGAAAGCATCGGTCCGATGCAAAATCCAATAGCGATAGTGAGGCCTCTGTATTTGAGACTGACAGTGGTTCATCATCAGTTACTGAATCTGATGATTCTTCCGAAGAAAGCAGTTCAGATTACAGTTCTTCGTCCGAATCAGAGTCGGAAAGGAGTCGAAGAAGGAGAAAGAAGCAGAAGAGGGGGAGAAGAAAGAGGAGGTACAGTTCGTCTTCTGATTCTTCTGATTCAGACTCAGGGTCTGAATCAGAGTCTGATTCCGACAATGAACGTAGTAGGAGGAAGAGCCGAAGACACAGCAGAAAACGCTAG

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCCGAAAGGATTAAGGCTGCGGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCCGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAAATGTATTTGATGAGTACTGAAAAGGCAGTCAGATTGGGTGAAAGAAAGGACATTAAGGTCTCTATGTCGAGTGCTGGTGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGATGGGACACTGGACCTATGAATGCAAAAACGAACGAGTTTACATATCCCGACCATCTCGAACTCAACAACTCAAAAACCCGAAACTGAGGATGAAGATGGCAGTCTCATTGGAGTTGGACAACCCAGATTCTGGTGAGGAGAAGAAGCCCAAGAAGCATTCAAAGAAGAAAAGTAAAAGAAAGCATCGGTCCGATGCAAAATCCAATAGCGATAGTGAGGCCTCTGTATTTGAGACTGACAGTGGTTCATCATCAGTTACTGAATCTGATGATTCTTCCGAAGAAAGCAGTTCAGATTACAGTTCTTCGTCCGAATCAGAGTCGGAAAGGAGTCGAAGAAGGAGAAAGAAGCAGAAGAGGGGGAGAAGAAAGAGGAGGTACAGTTCGTCTTCTGATTCTTCTGATTCAGACTCAGGGTCTGAATCAGAGTCTGATTCCGACAATGAACGTAGTAGGAGGAAGAGCCGAAGACACAGCAGAAAACGCTAG

Protein sequence

MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDSGSESESDSDNERSRRKSRRHSRKR

Homology

[Close]

BLAST of Lsi09G014850 vs. ExPASy Swiss-Prot
Match: Q9CX48 (Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc10 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-07
Identity = 66/164 (40.24%), Postives = 85/164 (51.83%), Query Frame = 0


Query: 96  QCQKCYQMGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKH 155
           +CQKC + GHWTYECK +R Y+ RPSRT +LK      +  + L+      GE    KK 
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKKALKEKENRLLLQ----SIGETNIEKKI 81

Query: 156 SKKKSKRKHRSDAKSNSDSEASVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRR 215
            KKK  +   S + S+SDS AS    +S S S T +  SSE+S SD S SS S S  S  
Sbjct: 82  KKKKRSKSVTSSSTSSSDSSAS----ESSSESETSASSSSEDSDSDESLSSSSSSSSSSA 141

Query: 216 RRKKQKRGRRKRRYSSSSDSSDSDSGSESESDSDNERSRRKSRR 260
                          S S SS S S S SES SD+E  ++K ++
Sbjct: 142 CSSSSSSSSSSSSSDSDSSSSSSSSSSSSESSSDDEPQKKKKKK 177

[Close]

BLAST of Lsi09G014850 vs. ExPASy Swiss-Prot
Match: Q8TBK6 (Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 66/181 (36.46%), Postives = 92/181 (50.83%), Query Frame = 0


Query: 85  VSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLELDNP 144
           + +S A     +CQKC + GHWTYEC  +R Y+ RPSRT +LK      +  + L+    
Sbjct: 33  IVISEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIG 92

Query: 145 DSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFETDSGSSSVTESDDSSEESSSDYSS 204
           ++  E+K    +KKK  +   S + S+SDS AS     S  S  T +  SSE+S +D SS
Sbjct: 93  ETNVERK----AKKKRSKSVTSSSSSSSDSSAS---DSSSESEETSTSSSSEDSDTDESS 152

Query: 205 SSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDSGSES------ESDSDNERSRRKSR 260
           SS S S  S                SSSS  SDSDS S S      +S SD+E  ++K +
Sbjct: 153 SSSSSSASSTT--------------SSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKKKK 192

[Close]

BLAST of Lsi09G014850 vs. ExPASy Swiss-Prot
Match: Q5EB97 (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 0


Query: 96  QCQKCYQMGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKH 155
           +CQKC + GHWTYECK +R Y+ RPSRT +LK   L+ K    L+    ++  E+K KK 
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKK-ALKEKENRLLQQSMGETNTERKTKKK 81

Query: 156 SKKKSKRKHRSDAKSNSDSEASVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRR 215
            + KS       + S+SDS AS    +S S S T +  SSE+S +D S SS S S     
Sbjct: 82  RRPKS-----VTSTSSSDSSAS----ESSSESETSASSSSEDSDADGSLSSSSSSSAYSS 141

Query: 216 RRKKQKRGRRKRRYSSSSDSSDSDSGSESESDSDNERSRRK 257
                         S SS SS S S SES SD +  + R+K
Sbjct: 142 SSSSSSSSSSSSSDSDSSSSSSSSSSSESSSDDEPPKKRKK 172

[Close]

BLAST of Lsi09G014850 vs. ExPASy TrEMBL
Match: A0A0A0LJ33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.3e-115
Identity = 258/264 (97.73%), Postives = 259/264 (98.11%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMS AGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VSLELDNPD GEEKKPKKHSKKKSKRKHRS+AKSNSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFE 180

Query: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240
           TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSDNERSRRKSRRHSRKR 265
            SESESDSDNERSRRKSRRHSRKR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Lsi09G014850 vs. ExPASy TrEMBL
Match: A0A1S3CDQ2 (zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC103499707 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.0e-113
Identity = 254/264 (96.21%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VSLELDNPD GEE+KPKKHSK KSKRKHRS+AKS+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240
           TDSGSSSVTESDDSSEESSSDYSSSSESE ERSRRRRKKQKRGRRKRRYSSSSDSSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSDNERSRRKSRRHSRKR 265
            SESESDSDNERSRRKSRRHSR+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Lsi09G014850 vs. ExPASy TrEMBL
Match: A0A5A7TW64 (Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001260 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.0e-113
Identity = 254/264 (96.21%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VSLELDNPD GEE+KPKKHSK KSKRKHRS+AKS+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240
           TDSGSSSVTESDDSSEESSSDYSSSSESE ERSRRRRKKQKRGRRKRRYSSSSDSSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSDNERSRRKSRRHSRKR 265
            SESESDSDNERSRRKSRRHSR+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Lsi09G014850 vs. ExPASy TrEMBL
Match: A0A6J1H6H5 (zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111460472 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.8e-108
Identity = 252/268 (94.03%), Postives = 257/268 (95.90%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKK--PKKHSKKKSKRKHRSDAKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLELDNPDSG+E+K   KK  KKKSKRKHRS+ KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESESERS--RRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SESERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDNERSRRKSRRHSRKR 265
           DSDSGSESESDSD+ERSRRKSRRHSRKR
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lsi09G014850 vs. ExPASy TrEMBL
Match: A0A6J1L1Z2 (zinc finger CCHC domain-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111499120 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 4.3e-107
Identity = 252/268 (94.03%), Postives = 256/268 (95.52%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSG-EEKKPKKHS-KKKSKRKHRSDAKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLE+DNPDSG EEKK KK   KKKSKRKHRS+ KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180

Query: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESESERS--RRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SESERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDNERSRRKSRRHSRKR 265
           DSDS SESESDSD+ERSRRKSRRHSRKR
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lsi09G014850 vs. NCBI nr
Match: XP_011649249.1 (zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypothetical protein Csa_006617 [Cucumis sativus])

HSP 1 Score: 423.3 bits (1087), Expect = 1.5e-114
Identity = 258/264 (97.73%), Postives = 259/264 (98.11%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMS AGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VSLELDNPD GEEKKPKKHSKKKSKRKHRS+AKSNSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFE 180

Query: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240
           TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSDNERSRRKSRRHSRKR 265
            SESESDSDNERSRRKSRRHSRKR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Lsi09G014850 vs. NCBI nr
Match: XP_008460988.2 (PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_008460989.1 PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >KAA0045615.1 zinc finger CCHC domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 416.4 bits (1069), Expect = 1.9e-112
Identity = 254/264 (96.21%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPKKHSKKKSKRKHRSDAKSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VSLELDNPD GEE+KPKKHSK KSKRKHRS+AKS+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240
           TDSGSSSVTESDDSSEESSSDYSSSSESE ERSRRRRKKQKRGRRKRRYSSSSDSSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSDNERSRRKSRRHSRKR 265
            SESESDSDNERSRRKSRRHSR+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Lsi09G014850 vs. NCBI nr
Match: XP_022959515.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 402.1 bits (1032), Expect = 3.6e-108
Identity = 252/268 (94.03%), Postives = 257/268 (95.90%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKK--PKKHSKKKSKRKHRSDAKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLELDNPDSG+E+K   KK  KKKSKRKHRS+ KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESESERS--RRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SESERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDNERSRRKSRRHSRKR 265
           DSDSGSESESDSD+ERSRRKSRRHSRKR
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lsi09G014850 vs. NCBI nr
Match: KAG7013679.1 (Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.1 bits (1024), Expect = 3.1e-107
Identity = 251/268 (93.66%), Postives = 256/268 (95.52%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKK--PKKHSKKKSKRKHRSDAKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLELDNPDSG+E+K   KK  KKKSKRKHRS+ KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESESERS--RRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SESERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDNERSRRKSRRHSRKR 265
           DSDS SESESDSD+ERSRRKSRRHSRKR
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lsi09G014850 vs. NCBI nr
Match: KAG6575110.1 (Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397.9 bits (1021), Expect = 6.8e-107
Identity = 250/268 (93.28%), Postives = 256/268 (95.52%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 40  MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 99

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMS+AGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 100 EAKRQMYLMSTEKAVRLGERKDIKVSMSTAGGAAAQCQKCYQSGHWTYECKNERVYISRP 159

Query: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGEEKK--PKKHSKKKSKRKHRSDAKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLELDNPDSG+E+K   KK  KKKSKRKHRS+ KSNSDSEASV
Sbjct: 160 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 219

Query: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESESERS--RRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SESERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 220 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 279

Query: 241 DSDSGSESESDSDNERSRRKSRRHSRKR 265
           DSDS SESESDSD+ERSRRKSRRHSRKR
Sbjct: 280 DSDSESESESDSDHERSRRKSRRHSRKR 307

[Close]

BLAST of Lsi09G014850 vs. TAIR 10
Match: AT5G49400.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 266.2 bits (679), Expect = 2.9e-71
Identity = 186/282 (65.96%), Postives = 215/282 (76.24%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA+RIKAA L+AAKGLSR QAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAG---GAAAQCQKCYQMGHWTYECKNERVYI 120
           E KRQMYLMSTEKAVRLGERKD  +S S+ G    AA+QCQKC+Q GHWTYECKNERVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKLRMKMAVSLELDNPDSGEEKKPK--------KHSKKKSKRKHRSDAK 180
           SRPSRTQQLKNPKLR K +V     + D  EE++P         +   KKSKRKHRS + 
Sbjct: 121 SRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSD 180

Query: 181 SNSDSEASVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRRR-------RKKQKR 240
           S SDSEASVFETD        SD SS ESSS+YSSSS+SE ER RRR       ++KQ++
Sbjct: 181 SESDSEASVFETD--------SDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRK 240

Query: 241 GRRKRRYSSSSDSSDSDSGSESESDSDNERSRRKSRRHSRKR 265
            RR+R  SSSS+SS+S+S S+S+SD D  R ++KS+RHS KR
Sbjct: 241 ERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKR 274

The following BLAST results are available for this feature:

BLAST of Lsi09G014850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CX48	3.7e-07	40.24	Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc1...	[more]
Q8TBK6	3.2e-06	36.46	Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10...	[more]
Q5EB97	1.6e-05	39.75	Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Z...	[more]

BLAST of Lsi09G014850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ33	7.3e-115	97.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1	[more]
A0A1S3CDQ2	9.0e-113	96.21	zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7TW64	9.0e-113	96.21	Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1H6H5	1.8e-108	94.03	zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1L1Z2	4.3e-107	94.03	zinc finger CCHC domain-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Lsi09G014850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649249.1	1.5e-114	97.73	zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypo...	[more]
XP_008460988.2	1.9e-112	96.21	PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_0084...	[more]
XP_022959515.1	3.6e-108	94.03	zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata]	[more]
KAG7013679.1	3.1e-107	93.66	Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. arg...	[more]
KAG6575110.1	6.8e-107	93.28	Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma s...	[more]

BLAST of Lsi09G014850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49400.1	2.9e-71	65.96	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 92..129 e-value: 2.9E-20 score: 71.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..206
IPR039715	Zinc finger CCHC domain-containing protein 10	PANTHER	PTHR13491	ZCCHC10 PROTEIN	coord: 1..253
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 91..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G014850.1	Lsi09G014850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding