Lsi09G014700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G014700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF3511)
Location	chr09: 22696419 .. 22696712 (+)
RNA-Seq Expression	Lsi09G014700
Synteny	Lsi09G014700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCAGAGGAAACAGAGAGAGAGGAGGTGAGCTAAAATCACCTTGTAGGTCAGATATGTATATAGACAGCAGTGAGAATCATCAGCGGTTTCAGGCGGCGTGGAATACGCAAAGCCATTTGCACGGTGGATCGTCGTCGTTTTCCAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCCTACGCCGTTGAAAGCAAATTGAAAGCGTCGCTTAGGAATGGGATACGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTCATCGTTGA

mRNA sequence

ATGGCTGCCAGAGGAAACAGAGAGAGAGGAGGTGAGCTAAAATCACCTTGTAGGTCAGATATGTATATAGACAGCAGTGAGAATCATCAGCGGTTTCAGGCGGCGTGGAATACGCAAAGCCATTTGCACGGTGGATCGTCGTCGTTTTCCAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCCTACGCCGTTGAAAGCAAATTGAAAGCGTCGCTTAGGAATGGGATACGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTCATCGTTGA

Coding sequence (CDS)

ATGGCTGCCAGAGGAAACAGAGAGAGAGGAGGTGAGCTAAAATCACCTTGTAGGTCAGATATGTATATAGACAGCAGTGAGAATCATCAGCGGTTTCAGGCGGCGTGGAATACGCAAAGCCATTTGCACGGTGGATCGTCGTCGTTTTCCAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCCTACGCCGTTGAAAGCAAATTGAAAGCGTCGCTTAGGAATGGGATACGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTCATCGTTGA

Protein sequence

MAARGNRERGGELKSPCRSDMYIDSSENHQRFQAAWNTQSHLHGGSSSFSNGHDEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR

Homology

[Close]

BLAST of Lsi09G014700 vs. ExPASy TrEMBL
Match: A0A0A0KCE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MAARGNRERGGELKSPCRSDMYIDSSENHQRFQAAWNTQSHLHGGSSSFSNGHDEPEVKR 60
          MAA+GNRERGG LKSPCRSD Y  +         AWNT SHLHGGSSS SNGHDEPEVKR
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAA-------PTAWNTHSHLHGGSSSVSNGHDEPEVKR 60

Query: 61 QRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
          QRRIAKYKAYAVESKLK+SLR+GIRWVKIKC+ELL R
Sbjct: 61 QRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]

BLAST of Lsi09G014700 vs. ExPASy TrEMBL
Match: A0A5D3BVC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00180 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 75/100 (75.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1  MAARGNRERGGELKSPCRSDMYIDSSENHQRFQA---AWNTQSHLHGGSSSFSNGHDEPE 60
          MA +GNRE GG LKS CRSDMY  SS+N QRF A   AWNT        SS SNGHDE E
Sbjct: 1  MAGKGNREGGGVLKSTCRSDMYTSSSDNPQRFTAAPTAWNT--------SSVSNGHDEQE 60

Query: 61 VKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
          VKRQRRIAKYKAYAVESKLK+SLRNGIRWVKIK SELLHR
Sbjct: 61 VKRQRRIAKYKAYAVESKLKSSLRNGIRWVKIKYSELLHR 92

[Close]

BLAST of Lsi09G014700 vs. ExPASy TrEMBL
Match: A0A6J1CB45 (uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009876 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.8e-26
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MAARGNRERGGELKSP--CRSDMYIDS----SENHQRFQAAW-NTQSHLHGGSSSFSNGH 60
           MA  GNRERG E KS   C SD Y +     S+ +QRF AAW NT  H+HGG SSFS G+
Sbjct: 1   MATGGNRERGSEFKSAYICSSDNYGNEMNGRSQVNQRFPAAWNNTHGHMHGG-SSFSGGY 60

Query: 61  DEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
           DEPE KRQRRIAKYKAYAVESKLK+S RNGIRWVKIKC+++ HR
Sbjct: 61  DEPEAKRQRRIAKYKAYAVESKLKSSFRNGIRWVKIKCNDIFHR 103

[Close]

BLAST of Lsi09G014700 vs. ExPASy TrEMBL
Match: I1GQX4 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g16830v3 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 44  GGSSSFSNGHDEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
           G SSS+  G D+ E+KR+ R+A YKAYAVE K+KAS+R GIRW+K KCS ++HR
Sbjct: 49  GSSSSWLAGPDQAEMKRRGRVASYKAYAVEGKVKASIRRGIRWIKTKCSHIVHR 102

[Close]

BLAST of Lsi09G014700 vs. ExPASy TrEMBL
Match: A0A438DWT2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081073 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 38  TQSHLHGGSSSFSNGHDEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLH 97
           ++++ +  SSS S G  +PE+KR++RIA YKAY VE K+KASLR G RWVK KCS+L+H
Sbjct: 48  SKNYYYEDSSSSSWGFSDPEIKRRKRIALYKAYGVEGKMKASLRGGFRWVKNKCSQLIH 106

[Close]

BLAST of Lsi09G014700 vs. NCBI nr
Match: KGN47400.1 (hypothetical protein Csa_023055 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MAARGNRERGGELKSPCRSDMYIDSSENHQRFQAAWNTQSHLHGGSSSFSNGHDEPEVKR 60
          MAA+GNRERGG LKSPCRSD Y  +         AWNT SHLHGGSSS SNGHDEPEVKR
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAA-------PTAWNTHSHLHGGSSSVSNGHDEPEVKR 60

Query: 61 QRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
          QRRIAKYKAYAVESKLK+SLR+GIRWVKIKC+ELL R
Sbjct: 61 QRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]

BLAST of Lsi09G014700 vs. NCBI nr
Match: TYK02938.1 (hypothetical protein E5676_scaffold46G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 75/100 (75.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1  MAARGNRERGGELKSPCRSDMYIDSSENHQRFQA---AWNTQSHLHGGSSSFSNGHDEPE 60
          MA +GNRE GG LKS CRSDMY  SS+N QRF A   AWNT        SS SNGHDE E
Sbjct: 1  MAGKGNREGGGVLKSTCRSDMYTSSSDNPQRFTAAPTAWNT--------SSVSNGHDEQE 60

Query: 61 VKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
          VKRQRRIAKYKAYAVESKLK+SLRNGIRWVKIK SELLHR
Sbjct: 61 VKRQRRIAKYKAYAVESKLKSSLRNGIRWVKIKYSELLHR 92

[Close]

BLAST of Lsi09G014700 vs. NCBI nr
Match: KAG7026338.1 (hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MAARGNRERGGELKSPCRSDMYIDSSENHQRF----QAAWNTQSHLHGGSSSFSNGHDEP 60
           MAARG+ ERGG+LKSPCRSD YID +EN Q+F     AA N  SHLHGGS+    G DE 
Sbjct: 1   MAARGHTERGGQLKSPCRSDTYID-TENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDES 60

Query: 61  EVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
           EVKRQ+RIAKYKAYAVESK KAS+R+GIRWVKIKC +LL R
Sbjct: 61  EVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 100

[Close]

BLAST of Lsi09G014700 vs. NCBI nr
Match: XP_022138799.1 (uncharacterized protein LOC111009876 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MAARGNRERGGELKSP--CRSDMYIDS----SENHQRFQAAW-NTQSHLHGGSSSFSNGH 60
           MA  GNRERG E KS   C SD Y +     S+ +QRF AAW NT  H+HGG SSFS G+
Sbjct: 1   MATGGNRERGSEFKSAYICSSDNYGNEMNGRSQVNQRFPAAWNNTHGHMHGG-SSFSGGY 60

Query: 61  DEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
           DEPE KRQRRIAKYKAYAVESKLK+S RNGIRWVKIKC+++ HR
Sbjct: 61  DEPEAKRQRRIAKYKAYAVESKLKSSFRNGIRWVKIKCNDIFHR 103

[Close]

BLAST of Lsi09G014700 vs. NCBI nr
Match: KAG6575094.1 (hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013667.1 hypothetical protein SDJN02_23834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 65/97 (67.01%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1  MAARGNRERGGELKSPCRSDMYIDSSENHQRFQAAWNTQSHLHGGSSSFSNGHDEPEVKR 60
          MAA GNR RG ELK PCRSD Y+ SSENHQ               ++S +  HDEPE KR
Sbjct: 1  MAANGNRGRGRELKKPCRSDTYV-SSENHQL-------------PAASTAACHDEPEAKR 60

Query: 61 QRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
          QRR+AKYKAYAVESK KASLRNGIRWVKIKCSELL+R
Sbjct: 61 QRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLNR 83

[Close]

BLAST of Lsi09G014700 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-10
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 43  HGGSSSFSNGHDEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLHR 98
           +  SS    G  + E+KR++RIA+YKAY VE K+K++L+NG RW+K KC +++HR
Sbjct: 55  NASSSLRIGGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHR 109

[Close]

BLAST of Lsi09G014700 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 60.5 bits (145), Expect = 8.8e-10
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 14  KSPCRSDMYIDSSENHQRFQAAWNTQSHLHGGSSSFSNGHDEPEVKRQRRIAKYKAYAVE 73
           +SP ++D++   S      +    + SH    S+ F    ++PE+KR+RR+AKYK Y+ E
Sbjct: 45  RSPIKTDIWRKMSYKDMPVRPR-RSSSH----STLFKGWWNDPEIKRKRRVAKYKLYSAE 104

Query: 74  SKLKASLRNGIRWVKIKCSELLH 97
            K+K +LR   +W+KI+CS+++H
Sbjct: 105 GKMKITLRKSYKWIKIQCSKIIH 122

[Close]

BLAST of Lsi09G014700 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-08
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 46  SSSFSNGHDEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLH 97
           SSS S G  +P+++R++R+  Y+AY VE KLK S R   +W+K KC++LL+
Sbjct: 66  SSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of Lsi09G014700 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 48  SFSNGHDEPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLH 97
           S S G  +PE++R++R+A YK Y VE K+K S RN  RW+K + +++++
Sbjct: 54  SKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVY 102

[Close]

BLAST of Lsi09G014700 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 55  EPEVKRQRRIAKYKAYAVESKLKASLRNGIRWVKIKCSELLH 97
           + E KR++RIA YK YA+E K+K++++ G  W+K + S ++H
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIH 109

The following BLAST results are available for this feature:

BLAST of Lsi09G014700 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G014700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCE9	1.3e-32	78.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1	[more]
A0A5D3BVC0	1.5e-28	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CB45	6.8e-26	67.31	uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
I1GQX4	1.5e-09	61.11	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g16830v3 P...	[more]
A0A438DWT2	2.0e-09	57.63	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081073 PE=4 SV=1	[more]

BLAST of Lsi09G014700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47400.1	2.7e-32	78.35	hypothetical protein Csa_023055 [Cucumis sativus]	[more]
TYK02938.1	3.0e-28	75.00	hypothetical protein E5676_scaffold46G00180 [Cucumis melo var. makuwa]	[more]
KAG7026338.1	1.5e-27	70.30	hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022138799.1	1.4e-25	67.31	uncharacterized protein LOC111009876 [Momordica charantia]	[more]
KAG6575094.1	1.5e-22	67.01	hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi09G014700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47480.1	5.2e-10	49.09	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	8.8e-10	36.14	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	4.9e-08	47.06	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	4.5e-06	42.86	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.0e-05	42.86	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 54..96 e-value: 4.5E-22 score: 77.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 14..93
None	No IPR available	PANTHER	PTHR33193:SF41	SUBFAMILY NOT NAMED	coord: 14..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G014700.1	Lsi09G014700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010090	trichome morphogenesis