Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAATCAAAGATGCTTCTTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTGGATAGATTATTGTCTAATCCTCATGAATTGGAATCTGCTGTGGATGATCAGGACGATGCTTGCTCCTGCAGCTGCAATGATTTTACTAATGATGATCTCAGAGCCCTTGATTTCCAAGATGATGGGGATGCCGATGGAGATCAAGCCGTTGGTTTGATTGGTGACGGTGGAAGGCGGCGAAGCGGGGCAGCGTTGGAGTACGGTTACGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGCCGTGATTCGTAATATGGATGAAATGGAAGATAAGCTCTTTTGGGACACTTGTATGGCAGGAGGGTATCCCTGA
mRNA sequence
ATGGACCAAATCAAAGATGCTTCTTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTGGATAGATTATTGTCTAATCCTCATGAATTGGAATCTGCTGTGGATGATCAGGACGATGCTTGCTCCTGCAGCTGCAATGATTTTACTAATGATGATCTCAGAGCCCTTGATTTCCAAGATGATGGGGATGCCGATGGAGATCAAGCCGTTGGTTTGATTGGTGACGGTGGAAGGCGGCGAAGCGGGGCAGCGTTGGAGTACGGTTACGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGCCGTGATTCGTAATATGGATGAAATGGAAGATAAGCTCTTTTGGGACACTTGTATGGCAGGAGGGTATCCCTGA
Coding sequence (CDS)
ATGGACCAAATCAAAGATGCTTCTTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTGGATAGATTATTGTCTAATCCTCATGAATTGGAATCTGCTGTGGATGATCAGGACGATGCTTGCTCCTGCAGCTGCAATGATTTTACTAATGATGATCTCAGAGCCCTTGATTTCCAAGATGATGGGGATGCCGATGGAGATCAAGCCGTTGGTTTGATTGGTGACGGTGGAAGGCGGCGAAGCGGGGCAGCGTTGGAGTACGGTTACGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGCCGTGATTCGTAATATGGATGAAATGGAAGATAAGCTCTTTTGGGACACTTGTATGGCAGGAGGGTATCCCTGA
Protein sequence
MDQIKDASSFFLWEDSADSEVDRLLSNPHELESAVDDQDDACSCSCNDFTNDDLRALDFQDDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNMDEMEDKLFWDTCMAGGYP
Homology
BLAST of Lsi09G013870 vs. ExPASy TrEMBL
Match:
A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 115/139 (82.73%), Postives = 123/139 (88.49%), Query Frame = 0
Query: 1 MDQIKDASSFFLWEDSADSEVDRLLSNPHELESAV--DDQDDACSCSC--NDFTNDDLRA 60
MDQIKDASSFFLWEDSADSEVD+LLS+PHELESAV DDQ+DACSCSC NDF+ DDLRA
Sbjct: 1 MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60
Query: 61 LDFQDD---GDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN 120
LDFQDD GD D DQ + LIGDGGRRRSGAAL+YGY EEEEEEEEEESS+DV VIRN
Sbjct: 61 LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGY---EEEEEEEEEESSDDVGVIRN 120
Query: 121 MDEMEDKLFWDTCMAGGYP 133
M+EMEDKLFWDTCMAGGYP
Sbjct: 121 MNEMEDKLFWDTCMAGGYP 136
BLAST of Lsi09G013870 vs. ExPASy TrEMBL
Match:
A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 7.8e-41
Identity = 105/139 (75.54%), Postives = 114/139 (82.01%), Query Frame = 0
Query: 1 MDQIKDASSFFLWEDSADSEVDRLLSN-PHELESAV---DDQDDACSCSCNDFTNDDLRA 60
MDQIKDASSFFLWEDSADSEVD+LLS+ PH+LESAV DDQ+DACSCSCN N+D
Sbjct: 1 MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN---NNDFSI 60
Query: 61 LDFQD--DGD-ADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN 120
DFQD DGD DGDQ +GLIGDGGRRRSGA GY EEEEEEEEEE S+NDV IRN
Sbjct: 61 DDFQDAYDGDNGDGDQDIGLIGDGGRRRSGA----GY--EEEEEEEEEESSNNDVGAIRN 120
Query: 121 MDEMEDKLFWDTCMAGGYP 133
M+EMEDK+FWDTCMAGGYP
Sbjct: 121 MNEMEDKVFWDTCMAGGYP 130
BLAST of Lsi09G013870 vs. ExPASy TrEMBL
Match:
A0A7J7CXK2 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01570 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 9.7e-07
Identity = 57/133 (42.86%), Postives = 68/133 (51.13%), Query Frame = 0
Query: 3 QIKDASSFFLWEDSADSEVDRLLSNPHELESAVDDQDDACSCSCNDFTNDDLRALDFQDD 62
++ D SSF L E SADSE+D + DD DDA SCSC D LDF DD
Sbjct: 10 RVLDISSFLLVEGSADSEMDDGYLDTFIAGDDDDDDDDAESCSC------DSPVLDFSDD 69
Query: 63 GDADGDQAVGLIGD--GGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN-MDEMED 122
D+ + + GD + + G E EE EEEEE S D+ R DEMED
Sbjct: 70 -----DRHMNVHGDYHCWNNCNMWWSDLGIEGMAPEEGEEEEEVSLDLHKTRQAKDEMED 129
Query: 123 KLFWDTCMAGGYP 133
KLFW+TCM GYP
Sbjct: 130 KLFWETCMELGYP 131
BLAST of Lsi09G013870 vs. ExPASy TrEMBL
Match:
A0A067G8N3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032474mg PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 0
Query: 6 DASSFFLWEDSADSEVDRLLSNP--HELESAVDDQDDACSCSCNDFT--------NDDLR 65
D SSF L E+SADSEVD L + A D+DDA SCSC+ + +L+
Sbjct: 8 DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67
Query: 66 ALDFQDDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNM- 125
+F DDGD I + A + ++EEE SS D+ + N+
Sbjct: 68 NEEFDDDGDGSSTDQHRQINWSSSCKIWWA---------DGADDEEEYSSWDIGINNNIS 127
Query: 126 ----DEMEDKLFWDTCMAGGYP 133
DEMED+LFW+TCMA GYP
Sbjct: 128 RKVKDEMEDRLFWETCMAFGYP 140
BLAST of Lsi09G013870 vs. ExPASy TrEMBL
Match:
A0A5E4EN68 (PREDICTED: LOC110601647 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000347 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 4.8e-06
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 0
Query: 6 DASSFFLWEDSADSEVDR-----LLSNPHELESAVDDQDDACSCSCNDFTNDDLRALDFQ 65
D S FFLWEDSADSE D N ++E A+ + +DA SCS ++ A +
Sbjct: 9 DVSCFFLWEDSADSEADHHTGPLNADNSSKIEIAL-EAEDAESCSSGTLSDHAFGACEAL 68
Query: 66 DDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEE----EEEEEEEEESSNDVAVIRNMDE 125
D + ++ R++S + + G + + EE+EEEE ES V ++MDE
Sbjct: 69 DSYCKNAEE---------RQQSRCSSKVGLQSDAGSGYEEDEEEEVESKMVCHVNKSMDE 128
Query: 126 M-EDKLFWDTCMAGGYP 133
M ED+LFW+TCMA GYP
Sbjct: 129 MEEDRLFWETCMAVGYP 135
BLAST of Lsi09G013870 vs. NCBI nr
Match:
KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])
HSP 1 Score: 205.7 bits (522), Expect = 2.5e-49
Identity = 115/139 (82.73%), Postives = 123/139 (88.49%), Query Frame = 0
Query: 1 MDQIKDASSFFLWEDSADSEVDRLLSNPHELESAV--DDQDDACSCSC--NDFTNDDLRA 60
MDQIKDASSFFLWEDSADSEVD+LLS+PHELESAV DDQ+DACSCSC NDF+ DDLRA
Sbjct: 1 MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60
Query: 61 LDFQDD---GDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN 120
LDFQDD GD D DQ + LIGDGGRRRSGAAL+YGY EEEEEEEEEESS+DV VIRN
Sbjct: 61 LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGY---EEEEEEEEEESSDDVGVIRN 120
Query: 121 MDEMEDKLFWDTCMAGGYP 133
M+EMEDKLFWDTCMAGGYP
Sbjct: 121 MNEMEDKLFWDTCMAGGYP 136
BLAST of Lsi09G013870 vs. NCBI nr
Match:
KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 154.8 bits (390), Expect = 5.0e-34
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 4 IKDASSFFLWEDSADSEVDRLLSNPHELESAVDDQDDACSCSCNDFTNDDLRALDFQDDG 63
+ +ASS FLWED+ADSEVDRLLS+PH+LESAVDD +DA SCSC+D+ D A+D QDDG
Sbjct: 1 MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYAT-DRSAVDLQDDG 60
Query: 64 DADGDQAVGLIGDGGR-------RRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNMDE 123
D D D+AVG GD R R SGA LEY EE+EEEEEES+N+V IR+M+E
Sbjct: 61 DGDEDRAVGSTGDDARSSHLDETRPSGATLEY----SSEEDEEEEEESNNNVGAIRDMNE 120
Query: 124 MEDKLFWDTCMAGGYP 133
MEDKLFWDTCM GGYP
Sbjct: 121 MEDKLFWDTCMEGGYP 131
BLAST of Lsi09G013870 vs. NCBI nr
Match:
KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])
HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 90/124 (72.58%), Postives = 99/124 (79.84%), Query Frame = 0
Query: 16 SADSEVDRLLSN-PHELESAV---DDQDDACSCSCNDFTNDDLRALDFQD--DGD-ADGD 75
SADSEVD+LLS+ PH+LESAV DDQ+DACSCSCN N+D DFQD DGD DGD
Sbjct: 31 SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN---NNDFSIDDFQDAYDGDNGDGD 90
Query: 76 QAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNMDEMEDKLFWDTCMA 133
Q +GLIGDGGRRRSGA GY EEEEEEEEEE S+NDV IRNM+EMEDK+FWDTCMA
Sbjct: 91 QDIGLIGDGGRRRSGA----GY--EEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCMA 145
BLAST of Lsi09G013870 vs. NCBI nr
Match:
KAF5738669.1 (hypothetical protein HS088_TW13G01570 [Tripterygium wilfordii])
HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 57/133 (42.86%), Postives = 68/133 (51.13%), Query Frame = 0
Query: 3 QIKDASSFFLWEDSADSEVDRLLSNPHELESAVDDQDDACSCSCNDFTNDDLRALDFQDD 62
++ D SSF L E SADSE+D + DD DDA SCSC D LDF DD
Sbjct: 10 RVLDISSFLLVEGSADSEMDDGYLDTFIAGDDDDDDDDAESCSC------DSPVLDFSDD 69
Query: 63 GDADGDQAVGLIGD--GGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN-MDEMED 122
D+ + + GD + + G E EE EEEEE S D+ R DEMED
Sbjct: 70 -----DRHMNVHGDYHCWNNCNMWWSDLGIEGMAPEEGEEEEEVSLDLHKTRQAKDEMED 129
Query: 123 KLFWDTCMAGGYP 133
KLFW+TCM GYP
Sbjct: 130 KLFWETCMELGYP 131
BLAST of Lsi09G013870 vs. NCBI nr
Match:
KDO74975.1 (hypothetical protein CISIN_1g032474mg [Citrus sinensis])
HSP 1 Score: 61.6 bits (148), Expect = 5.8e-06
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 0
Query: 6 DASSFFLWEDSADSEVDRLLSNP--HELESAVDDQDDACSCSCNDFT--------NDDLR 65
D SSF L E+SADSEVD L + A D+DDA SCSC+ + +L+
Sbjct: 8 DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67
Query: 66 ALDFQDDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNM- 125
+F DDGD I + A + ++EEE SS D+ + N+
Sbjct: 68 NEEFDDDGDGSSTDQHRQINWSSSCKIWWA---------DGADDEEEYSSWDIGINNNIS 127
Query: 126 ----DEMEDKLFWDTCMAGGYP 133
DEMED+LFW+TCMA GYP
Sbjct: 128 RKVKDEMEDRLFWETCMAFGYP 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SSL9 | 1.2e-49 | 82.73 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0A0KBF3 | 7.8e-41 | 75.54 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1 | [more] |
A0A7J7CXK2 | 9.7e-07 | 42.86 | Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01570 ... | [more] |
A0A067G8N3 | 2.8e-06 | 37.32 | Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032474mg PE=4 SV=1 | [more] |
A0A5E4EN68 | 4.8e-06 | 37.96 | PREDICTED: LOC110601647 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000347 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0033453.1 | 2.5e-49 | 82.73 | hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa] | [more] |
KAG6575041.1 | 5.0e-34 | 63.97 | hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8646684.1 | 2.3e-31 | 72.58 | hypothetical protein Csa_005604 [Cucumis sativus] | [more] |
KAF5738669.1 | 2.0e-06 | 42.86 | hypothetical protein HS088_TW13G01570 [Tripterygium wilfordii] | [more] |
KDO74975.1 | 5.8e-06 | 37.32 | hypothetical protein CISIN_1g032474mg [Citrus sinensis] | [more] |
Match Name | E-value | Identity | Description | |