Lsi09G013600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G013600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	serine incorporator 3
Location	chr09: 21627042 .. 21627308 (+)
RNA-Seq Expression	Lsi09G013600
Synteny	Lsi09G013600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTGCTTGTTTTCATGCTGTGCATCTCTCACGTGCGGTCTCTGCTCCTCCGTCGCCGCCGGCATCTCCAAAAGCTCCGCTAGACTTGCTTACTGTGGCCTTTTCGGCGTCTCCTTGGTCGTTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATTCCATGTGAGTTTCATCACTTGCTTGAATTTTCGTTATTCTACCTGATTTCAATTGTTTGCTCGTATCTTCGATTTTGTTTTTCTTTAGCTTCTTGA

mRNA sequence

ATGTCCTGCTTGTTTTCATGCTGTGCATCTCTCACGTGCGGTCTCTGCTCCTCCGTCGCCGCCGGCATCTCCAAAAGCTCCGCTAGACTTGCTTACTGTGGCCTTTTCGGCGTCTCCTTGGTCGTTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATTCCATGTGAGTTTCATCACTTGCTTGAATTTTCGTTATTCTACCTGATTTCAATTGTTTGCTCGTATCTTCGATTTTGTTTTTCTTTAGCTTCTTGA

Coding sequence (CDS)

ATGTCCTGCTTGTTTTCATGCTGTGCATCTCTCACGTGCGGTCTCTGCTCCTCCGTCGCCGCCGGCATCTCCAAAAGCTCCGCTAGACTTGCTTACTGTGGCCTTTTCGGCGTCTCCTTGGTCGTTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATTCCATGTGAGTTTCATCACTTGCTTGAATTTTCGTTATTCTACCTGATTTCAATTGTTTGCTCGTATCTTCGATTTTGTTTTTCTTTAGCTTCTTGA

Protein sequence

MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIPCEFHHLLEFSLFYLISIVCSYLRFCFSLAS

Homology

[Close]

BLAST of Lsi09G013600 vs. ExPASy TrEMBL
Match: A0A5A7SW70 (Serine incorporator 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00810 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAPLMEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPLMEKMP 58

[Close]

BLAST of Lsi09G013600 vs. ExPASy TrEMBL
Match: A0A1S3C9C5 (serine incorporator 3 OS=Cucumis melo OX=3656 GN=LOC103497921 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAPLMEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPLMEKMP 58

[Close]

BLAST of Lsi09G013600 vs. ExPASy TrEMBL
Match: A0A0A0KCI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G238640 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAP+MEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPIMEKMP 58

[Close]

BLAST of Lsi09G013600 vs. ExPASy TrEMBL
Match: A0A6J1L1J4 (serine incorporator 3 OS=Cucurbita maxima OX=3661 GN=LOC111499015 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKI 58
          MSCLFSCCASLTCGLCSSVA+GIS+SSARLAYCGLFG+SLV SWILREFGAPLMEK+
Sbjct: 1  MSCLFSCCASLTCGLCSSVASGISRSSARLAYCGLFGISLVTSWILREFGAPLMEKM 57

[Close]

BLAST of Lsi09G013600 vs. ExPASy TrEMBL
Match: A0A6J1H4T3 (serine incorporator 3 OS=Cucurbita moschata OX=3662 GN=LOC111460400 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKI 58
          MSCLFSCCASLTCGLCSSVA+GIS+SSARLAYCGLFG+SLV SWILREFGAPLMEK+
Sbjct: 1  MSCLFSCCASLTCGLCSSVASGISRSSARLAYCGLFGISLVTSWILREFGAPLMEKM 57

[Close]

BLAST of Lsi09G013600 vs. NCBI nr
Match: XP_038906601.1 (serine incorporator 3 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAPLMEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPLMEKMP 58

[Close]

BLAST of Lsi09G013600 vs. NCBI nr
Match: XP_008458551.1 (PREDICTED: serine incorporator 3 [Cucumis melo] >KAA0033429.1 serine incorporator 3 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAPLMEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPLMEKMP 58

[Close]

BLAST of Lsi09G013600 vs. NCBI nr
Match: XP_004150322.1 (serine incorporator 3 [Cucumis sativus] >KGN47263.1 hypothetical protein Csa_017009 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-21
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAP+MEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPIMEKMP 58

[Close]

BLAST of Lsi09G013600 vs. NCBI nr
Match: XP_023548171.1 (serine incorporator 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKI 58
          MSCLFSCCASLTCGLCSSVA+GIS+SSARLAYCGLFGVSLV SWILREFGAPLMEK+
Sbjct: 1  MSCLFSCCASLTCGLCSSVASGISRSSARLAYCGLFGVSLVTSWILREFGAPLMEKM 57

[Close]

BLAST of Lsi09G013600 vs. NCBI nr
Match: XP_022959416.1 (serine incorporator 3 [Cucurbita moschata] >KAG6575017.1 Serine incorporator 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013590.1 Serine incorporator 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-19
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKI 58
          MSCLFSCCASLTCGLCSSVA+GIS+SSARLAYCGLFG+SLV SWILREFGAPLMEK+
Sbjct: 1  MSCLFSCCASLTCGLCSSVASGISRSSARLAYCGLFGISLVTSWILREFGAPLMEKM 57

[Close]

BLAST of Lsi09G013600 vs. TAIR 10
Match: AT3G06170.1 (Serinc-domain containing serine and sphingolipid biosynthesis protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 3  CLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          CL SCCAS TCGLCSSVA+GIS+ SAR+AYCGLFG SLVVSWILRE GAPL+EK+P
Sbjct: 4  CLASCCASATCGLCSSVASGISRKSARIAYCGLFGASLVVSWILRETGAPLLEKLP 59

[Close]

BLAST of Lsi09G013600 vs. TAIR 10
Match: AT1G16180.1 (Serinc-domain containing serine and sphingolipid biosynthesis protein )

HSP 1 Score: 80.5 bits (197), Expect = 7.5e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2  SCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          SCL SCCA+  C  C +V +GIS+ SAR+AYCGLF +SL+VSWILRE  APLMEK+P
Sbjct: 5  SCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLP 61

[Close]

BLAST of Lsi09G013600 vs. TAIR 10
Match: AT1G16180.2 (Serinc-domain containing serine and sphingolipid biosynthesis protein )

HSP 1 Score: 80.5 bits (197), Expect = 7.5e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2  SCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          SCL SCCA+  C  C +V +GIS+ SAR+AYCGLF +SL+VSWILRE  APLMEK+P
Sbjct: 5  SCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLP 61

The following BLAST results are available for this feature:

BLAST of Lsi09G013600 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G013600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SW70	1.2e-21	96.55	Serine incorporator 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A1S3C9C5	1.2e-21	96.55	serine incorporator 3 OS=Cucumis melo OX=3656 GN=LOC103497921 PE=3 SV=1	[more]
A0A0A0KCI8	2.1e-21	94.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G238640 PE=3 SV=1	[more]
A0A6J1L1J4	8.7e-20	91.23	serine incorporator 3 OS=Cucurbita maxima OX=3661 GN=LOC111499015 PE=3 SV=1	[more]
A0A6J1H4T3	8.7e-20	91.23	serine incorporator 3 OS=Cucurbita moschata OX=3662 GN=LOC111460400 PE=3 SV=1	[more]

BLAST of Lsi09G013600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906601.1	2.5e-21	96.55	serine incorporator 3 [Benincasa hispida]	[more]
XP_008458551.1	2.5e-21	96.55	PREDICTED: serine incorporator 3 [Cucumis melo] >KAA0033429.1 serine incorporato...	[more]
XP_004150322.1	4.3e-21	94.83	serine incorporator 3 [Cucumis sativus] >KGN47263.1 hypothetical protein Csa_017...	[more]
XP_023548171.1	1.4e-19	92.98	serine incorporator 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022959416.1	1.8e-19	91.23	serine incorporator 3 [Cucurbita moschata] >KAG6575017.1 Serine incorporator 3, ...	[more]

BLAST of Lsi09G013600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06170.1	2.9e-20	82.14	Serinc-domain containing serine and sphingolipid biosynthesis protein	[more]
AT1G16180.1	7.5e-16	66.67	Serinc-domain containing serine and sphingolipid biosynthesis protein	[more]
AT1G16180.2	7.5e-16	66.67	Serinc-domain containing serine and sphingolipid biosynthesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005016	Serine incorporator/TMS membrane protein	PANTHER	PTHR10383	SERINE INCORPORATOR	coord: 2..62
None	No IPR available	PANTHER	PTHR10383:SF52	BNAANNG35710D PROTEIN	coord: 2..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G013600.1	Lsi09G013600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane