Lsi09G013520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G013520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	chr09: 21457445 .. 21458167 (-)
RNA-Seq Expression	Lsi09G013520
Synteny	Lsi09G013520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTTTGTGGCTAAAGTCTCTATGATGGTAGGCCCAGTATCGCTTGTGCGTTCTCTCTCTTGCTTGTGTGTACGTACTTTAAGCAACCTTTCCATAGATAAGCTAGAGGGCCCGTGATCTACGACCACCCTCATGGGTAGTGTTTTCACTCTCGGGCGGGGAGAGGGTGGTTGTAGATCATGGGCCTTGTGAAATTTTACATCGAGTGCTCCACCCTCCCACTCGGTAAAGCAATCTCTTATCTTCTTAGTGGCAGTATGTGCTTGGAGGCATTCCTGTCAATACTTTCTAGTATTTACAAAGGGAGGTTACATTAATTTAAGGTTGAAAAAAGAGTGCGTTGAGGATATGCTTTTATTCCTCACCCCATTATCAATTCCACATTCACCAATATAATGTAATTGATATATAATTGGTGTAATTTAGTGCTTGACTCTTGTCCTGTGAGATATTTCACTTTCTTTAATAAATCATCTATGTTTTTTGTAACTTTATTTGGATGGAGTTTTTCCTTTTTGCAAATTTCATAGGTTTGACCCTTTTATGGTAGATATTGGCGCACATACTCCCTTCTATATTTTTAGAGAAAGAAAATTAGTATATGATCTATTTGAAACAGCCACCAGTATGAGAATGATGCATAATTCTCATATACAAAATCTTAAATTGGATTTCTGCAAATTAGTATATGTATCACGGCTGGTCTACCTCGTGAATGGATAA

mRNA sequence

GGGTTTGTGGCTAAAGTCTCTATGATGGTAGGCCCAGTATCGCTTGTGCGTTCTCTCTCTTGCTTGTGTGTACGTACTTTAAGCAACCTTTCCATAGATAAGCTAGAGGGCCCTGCTCCACCCTCCCACTCGGTAAAGCAATCTCTTATCTTCTTAGTGGCATGCTTGACTCTTGTCCTGTTTGACCCTTTTATGGTAGATATTGGCGCACATACTCCCTTCTATATTTTTAGAGAAAGAAAATTAGTATATGATCTATTTGAAACAGCCACCAGTATGAGAATGATGCATAATTCTCATATACAAAATCTTAAATTGGATTTCTGCAAATTAGTATATGTATCACGGCTGGTCTACCTCGTGAATGGATAA

Coding sequence (CDS)

GGGTTTGTGGCTAAAGTCTCTATGATGGTAGGCCCAGTATCGCTTGTGCGTTCTCTCTCTTGCTTGTGTGTACGTACTTTAAGCAACCTTTCCATAGATAAGCTAGAGGGCCCTGCTCCACCCTCCCACTCGGTAAAGCAATCTCTTATCTTCTTAGTGGCATGCTTGACTCTTGTCCTGTTTGACCCTTTTATGGTAGATATTGGCGCACATACTCCCTTCTATATTTTTAGAGAAAGAAAATTAGTATATGATCTATTTGAAACAGCCACCAGTATGAGAATGATGCATAATTCTCATATACAAAATCTTAAATTGGATTTCTGCAAATTAGTATATGTATCACGGCTGGTCTACCTCGTGAATGGATAA

Protein sequence

GFVAKVSMMVGPVSLVRSLSCLCVRTLSNLSIDKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTPFYIFRERKLVYDLFETATSMRMMHNSHIQNLKLDFCKLVYVSRLVYLVNG

Homology

[Close]

BLAST of Lsi09G013520 vs. ExPASy Swiss-Prot
Match: Q70XV8 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Amborella trichopoda OX=13333 GN=ndhH PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-10
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+L+YDLFETAT MRMMHN
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELLYDLFETATGMRMMHN 156

[Close]

BLAST of Lsi09G013520 vs. ExPASy Swiss-Prot
Match: B1A990 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya OX=3649 GN=ndhH PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHN 156

[Close]

BLAST of Lsi09G013520 vs. ExPASy Swiss-Prot
Match: Q09MC0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhH PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Sbjct: 117 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHN 158

[Close]

BLAST of Lsi09G013520 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHN 156

[Close]

BLAST of Lsi09G013520 vs. ExPASy Swiss-Prot
Match: Q49KU2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhH PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHN 156

[Close]

BLAST of Lsi09G013520 vs. ExPASy TrEMBL
Match: A0A6B9VXE5 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Allium cyathophorum OX=105302 GN=ndhH PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 33  DKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETAT 92
           ++LE    P  +    LI L     L+   PFM DIGA TP FYIFRER+L+YDLFE AT
Sbjct: 87  ERLESVQVPKRASYIRLIMLGIASHLLWLGPFMADIGAQTPFFYIFRERELLYDLFEAAT 146

Query: 93  SMRMMHN 99
            MRMMHN
Sbjct: 147 GMRMMHN 153

[Close]

BLAST of Lsi09G013520 vs. ExPASy TrEMBL
Match: A0A5D2I6G1 (Complex1_49kDa domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D12G079800v1 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD 108
           L+   PFM DIGA TP FYIFRER+LVYDLFE ATSMRMMHN  HI+ +  D
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATSMRMMHNYFHIRGMAAD 166

[Close]

BLAST of Lsi09G013520 vs. ExPASy TrEMBL
Match: A0A7J9D739 (Complex1_49kDa domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_005605 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 58 LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
          L+   PFM DIGA TP FYIFRER+LVYDLFETATSMRMMHN
Sbjct: 19 LLWLGPFMADIGAQTPSFYIFRERELVYDLFETATSMRMMHN 60

[Close]

BLAST of Lsi09G013520 vs. ExPASy TrEMBL
Match: A0A5D2A7C6 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D12G079000v1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLK---------- 117
           L+   PFM DIGA TP FYIFRER+LVYDLFE ATS+RMMHN  HI+ +           
Sbjct: 105 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATSIRMMHNYFHIRGMAADLTYGWIDK 164

Query: 118 -LDFCKLVYVSRLVY 120
            LDFC   +++R+ Y
Sbjct: 165 CLDFCD-YFLTRICY 178

[Close]

BLAST of Lsi09G013520 vs. ExPASy TrEMBL
Match: A0A4D6Q3Y4 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Kandelia obovata OX=413952 GN=ndhH PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+LVYDLFETAT MRMMHN
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELVYDLFETATGMRMMHN 156

[Close]

BLAST of Lsi09G013520 vs. NCBI nr
Match: YP_009729227.1 (NADH-plastoquinone oxidoreductase subunit 7 [Allium cyathophorum] >QHQ72902.1 NADH-plastoquinone oxidoreductase subunit 7 [Allium cyathophorum])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 33  DKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETAT 92
           ++LE    P  +    LI L     L+   PFM DIGA TP FYIFRER+L+YDLFE AT
Sbjct: 87  ERLESVQVPKRASYIRLIMLGIASHLLWLGPFMADIGAQTPFFYIFRERELLYDLFEAAT 146

Query: 93  SMRMMHN 99
            MRMMHN
Sbjct: 147 GMRMMHN 153

[Close]

BLAST of Lsi09G013520 vs. NCBI nr
Match: MBA0756553.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 68.6 bits (166), Expect = 4.4e-08
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 58 LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
          L+   PFM DIGA TP FYIFRER+LVYDLFETATSMRMMHN
Sbjct: 19 LLWLGPFMADIGAQTPSFYIFRERELVYDLFETATSMRMMHN 60

[Close]

BLAST of Lsi09G013520 vs. NCBI nr
Match: TYH37998.1 (hypothetical protein ES332_D12G079800v1 [Gossypium tomentosum])

HSP 1 Score: 68.6 bits (166), Expect = 4.4e-08
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD 108
           L+   PFM DIGA TP FYIFRER+LVYDLFE ATSMRMMHN  HI+ +  D
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATSMRMMHNYFHIRGMAAD 166

[Close]

BLAST of Lsi09G013520 vs. NCBI nr
Match: TYG40260.1 (hypothetical protein ES288_D12G079000v1 [Gossypium darwinii])

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-08
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLK---------- 117
           L+   PFM DIGA TP FYIFRER+LVYDLFE ATS+RMMHN  HI+ +           
Sbjct: 105 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATSIRMMHNYFHIRGMAADLTYGWIDK 164

Query: 118 -LDFCKLVYVSRLVY 120
            LDFC   +++R+ Y
Sbjct: 165 CLDFCD-YFLTRICY 178

[Close]

BLAST of Lsi09G013520 vs. NCBI nr
Match: KAB1998239.1 (hypothetical protein ES319_D12G075400v1 [Gossypium barbadense])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD 108
           L+   PFM DIGA TP FYIFRER+LVYDLFE ATS+RMMHN  HI+ +  D
Sbjct: 105 LLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATSIRMMHNYFHIRGMAAD 156

[Close]

BLAST of Lsi09G013520 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 58  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN 99
           L+   PFM DIGA TP FYIFRER+ VYDLFE AT MRMMHN
Sbjct: 115 LLWLGPFMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHN 156

The following BLAST results are available for this feature:

BLAST of Lsi09G013520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70XV8	3.8e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Amborella trichopoda ...	[more]
B1A990	6.4e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya OX=3649...	[more]
Q09MC0	6.4e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=27...	[more]
Q4VZL2	6.4e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q49KU2	6.4e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus s...	[more]

BLAST of Lsi09G013520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9VXE5	1.3e-08	55.22	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Allium cyathophorum O...	[more]
A0A5D2I6G1	2.1e-08	69.23	Complex1_49kDa domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES3...	[more]
A0A7J9D739	2.1e-08	80.95	Complex1_49kDa domain-containing protein OS=Gossypium gossypioides OX=34282 GN=G...	[more]
A0A5D2A7C6	4.8e-08	53.33	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D12G079000v1 PE=...	[more]
A0A4D6Q3Y4	6.2e-08	78.57	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Kandelia obovata OX=4...	[more]

BLAST of Lsi09G013520 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009729227.1	2.6e-08	55.22	NADH-plastoquinone oxidoreductase subunit 7 [Allium cyathophorum] >QHQ72902.1 NA...	[more]
MBA0756553.1	4.4e-08	80.95	hypothetical protein [Gossypium gossypioides]	[more]
TYH37998.1	4.4e-08	69.23	hypothetical protein ES332_D12G079800v1 [Gossypium tomentosum]	[more]
TYG40260.1	9.8e-08	53.33	hypothetical protein ES288_D12G079000v1 [Gossypium darwinii]	[more]
KAB1998239.1	1.3e-07	67.31	hypothetical protein ES319_D12G075400v1 [Gossypium barbadense]	[more]

BLAST of Lsi09G013520 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	1.3e-10	73.81	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11993:SF39	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 57..98
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 57..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G013520.1	Lsi09G013520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H