Lsi09G012630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G012630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor bHLH92
Location	chr09: 20303550 .. 20304929 (-)
RNA-Seq Expression	Lsi09G012630
Synteny	Lsi09G012630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCCCATAATTCCCAGTTTCCCCCTCTCTTCTCTTCTCTCCTCCATTTCCTTCCACTAGACCGTTGCAAAATCCCAACTGAATTTTGAAAAGAACAAAAACTTGATTACCCACCTGATATGGATGATAATTTTCCTGTCGAATTCTGGCATAACGATTTCTTTTGGCTCGACGCTCCCATTTCCGTCCCTGTACCCGCCCCCGCCTCTACCTCCACTCCCACGAGACAGATAAGTGCTTTCGTACCATATCTGTCTCAACCGTCTACCGAATTGGAACAAGAAAACAATCAGACAACTACTACTACTACCACTATCATCACCACCACCAGCACCAGCTATAATTCTAGGAATGTCAACAAGAGGATGGTTGAGTATTGGAGGAGGCATTGGGAGGAAAAGAAAGAACCAACTGCCTTAGTAGATTTAGAAAGAGAAAAATGTCACAGGCACATGTTGAATGAGAGGACGAGGAGAGAGAAACAGAAACAGAGTTATTTGGCACTCCACTCCATTCTCCCAAAAAACACTAAGGTAGGAAAATACAATTTTAACTTACCATATTCAAAATTACTTTGAAATATGTCATAAAGTTAGACAGTTATGTCTTTTATTACCTGATCTTCGATATTTCGTTAGATCCAAATTAACTATTTGTCATTGTTTTTCGTAGAACGATAAGAACTCAATCGTTCAAAGCGCAGCAAGAACGATACAAGAAATGAAAGCCTTAGAGAAGATTTTAAAGAGGAGAAACTTAGAGTTGGAGATGGCAATAGCAATGAAGAAGAAAGAAAAAGAAAAAGGGACAACACCAATAATAAGTGTAGCAATGCCCAACCCTTCTTGTGGGATCAACTCAATGTTGACTGTTCTCAATGTTCTCAAAAGTGTAGGAGCAAATTCCAAAGCCATTCGTGCTACTTTCTTCAAGTCTCAGTTTTCAGCCCAATTAGCCATTGATACCCATGTAAGAATATTAAACCTTCTTCTCAAATTTACCCTCCATTAGATGTACGGGAGAAAAATTGTCGTAATTTGAAATATGGATGAATCTGTTCTAATATCTGCATATCTCTTAATAACTATTAGATACATATTCGATATCATTACGAGGTTCGAGTTGAATAATTTATTATTATTATTTTTGAAAAAAAAAGGAAATTTTATTGTGTTGTTTGGTTGAGATTTGTAGATGGGAGCTGCCGAAGTAGAAAGAGCATTGCAGGTGACGCTAAACGAAGCAGAGAGGAAATTTCAAAGGCAATGCAAGGAAGGATCCAAAGAAATAAAAAAGAGCCATTTTAATTTTAATAATAATAATGGGGCCCACGAGGTGGGTCCAGAATTTGAAATCTAGATAGCTACGTGGACACGTGG

mRNA sequence

CAATCCCATAATTCCCAGTTTCCCCCTCTCTTCTCTTCTCTCCTCCATTTCCTTCCACTAGACCGTTGCAAAATCCCAACTGAATTTTGAAAAGAACAAAAACTTGATTACCCACCTGATATGGATGATAATTTTCCTGTCGAATTCTGGCATAACGATTTCTTTTGGCTCGACGCTCCCATTTCCGTCCCTGTACCCGCCCCCGCCTCTACCTCCACTCCCACGAGACAGATAAGTGCTTTCGTACCATATCTGTCTCAACCGTCTACCGAATTGGAACAAGAAAACAATCAGACAACTACTACTACTACCACTATCATCACCACCACCAGCACCAGCTATAATTCTAGGAATGTCAACAAGAGGATGGTTGAGTATTGGAGGAGGCATTGGGAGGAAAAGAAAGAACCAACTGCCTTAGTAGATTTAGAAAGAGAAAAATGTCACAGGCACATGTTGAATGAGAGGACGAGGAGAGAGAAACAGAAACAGAGTTATTTGGCACTCCACTCCATTCTCCCAAAAAACACTAAGAACGATAAGAACTCAATCGTTCAAAGCGCAGCAAGAACGATACAAGAAATGAAAGCCTTAGAGAAGATTTTAAAGAGGAGAAACTTAGAGTTGGAGATGGCAATAGCAATGAAGAAGAAAGAAAAAGAAAAAGGGACAACACCAATAATAAGTGTAGCAATGCCCAACCCTTCTTGTGGGATCAACTCAATGTTGACTGTTCTCAATGTTCTCAAAAGTGTAGGAGCAAATTCCAAAGCCATTCGTGCTACTTTCTTCAAGTCTCAGTTTTCAGCCCAATTAGCCATTGATACCCATATGGGAGCTGCCGAAGTAGAAAGAGCATTGCAGGTGACGCTAAACGAAGCAGAGAGGAAATTTCAAAGGCAATGCAAGGAAGGATCCAAAGAAATAAAAAAGAGCCATTTTAATTTTAATAATAATAATGGGGCCCACGAGGTGGGTCCAGAATTTGAAATCTAGATAGCTACGTGGACACGTGG

Coding sequence (CDS)

ATGGATGATAATTTTCCTGTCGAATTCTGGCATAACGATTTCTTTTGGCTCGACGCTCCCATTTCCGTCCCTGTACCCGCCCCCGCCTCTACCTCCACTCCCACGAGACAGATAAGTGCTTTCGTACCATATCTGTCTCAACCGTCTACCGAATTGGAACAAGAAAACAATCAGACAACTACTACTACTACCACTATCATCACCACCACCAGCACCAGCTATAATTCTAGGAATGTCAACAAGAGGATGGTTGAGTATTGGAGGAGGCATTGGGAGGAAAAGAAAGAACCAACTGCCTTAGTAGATTTAGAAAGAGAAAAATGTCACAGGCACATGTTGAATGAGAGGACGAGGAGAGAGAAACAGAAACAGAGTTATTTGGCACTCCACTCCATTCTCCCAAAAAACACTAAGAACGATAAGAACTCAATCGTTCAAAGCGCAGCAAGAACGATACAAGAAATGAAAGCCTTAGAGAAGATTTTAAAGAGGAGAAACTTAGAGTTGGAGATGGCAATAGCAATGAAGAAGAAAGAAAAAGAAAAAGGGACAACACCAATAATAAGTGTAGCAATGCCCAACCCTTCTTGTGGGATCAACTCAATGTTGACTGTTCTCAATGTTCTCAAAAGTGTAGGAGCAAATTCCAAAGCCATTCGTGCTACTTTCTTCAAGTCTCAGTTTTCAGCCCAATTAGCCATTGATACCCATATGGGAGCTGCCGAAGTAGAAAGAGCATTGCAGGTGACGCTAAACGAAGCAGAGAGGAAATTTCAAAGGCAATGCAAGGAAGGATCCAAAGAAATAAAAAAGAGCCATTTTAATTTTAATAATAATAATGGGGCCCACGAGGTGGGTCCAGAATTTGAAATCTAG

Protein sequence

MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTTTTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRREKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHFNFNNNNGAHEVGPEFEI

Homology

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BLAST of Lsi09G012630 vs. ExPASy Swiss-Prot
Match: Q9FIX5 (Transcription factor bHLH92 OS=Arabidopsis thaliana OX=3702 GN=BHLH92 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-28
Identity = 83/180 (46.11%), Postives = 110/180 (61.11%), Query Frame = 0


Query: 78  NVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRREKQKQSYLALHSILPKNT 137
           NV KRMV   R++WEEKK   A    E+E+  RHML ERTRREKQKQSYLALHS+LP  T
Sbjct: 60  NVKKRMVNLLRKNWEEKKNTVA---PEKERSRRHMLKERTRREKQKQSYLALHSLLPFAT 119

Query: 138 KNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEKEKGTTPIISVAMPNPSC 197
           KNDKNSIV+ A   I +++ L+K L RR   +E   A    ++   T   + V +  P  
Sbjct: 120 KNDKNSIVEKAVDEIAKLQRLKKELVRRIKVIEEKSAKDGHDEMSETK--VRVNLKEPLS 179

Query: 198 GINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGAAEVERALQVTLNEAERK 257
           G++SML  L+ LKS+G   K + A F   +FSA + I+T +   EVE+ ++  L E E K
Sbjct: 180 GLDSMLEALHYLKSMGTKLKTVHANFSPQEFSATMTIETQIRGEEVEKRVERRLQETEWK 234

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BLAST of Lsi09G012630 vs. ExPASy Swiss-Prot
Match: Q75KV9 (Transcription factor BHLH148 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-16
Identity = 59/155 (38.06%), Postives = 91/155 (58.71%), Query Frame = 0


Query: 102 DLEREKCHRHMLNERTRREKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKI 161
           D+E  +  RHM+ ER RREK  QSY  L++++   +K DKNSIVQSAA  I E+K     
Sbjct: 123 DVESSRGFRHMMRERQRREKLSQSYADLYAMVSSRSKGDKNSIVQSAAIYIHELKVARDQ 182

Query: 162 LKRRNLELEMAIAMKKKEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRA 221
           L+RRN EL+  I M   E++   T  +   +  PS  I+SM+  L  LK +   ++ IR+
Sbjct: 183 LQRRNEELKAQI-MGHDEQQPCVT--VQFEVDEPSSSIDSMIAALRRLKGMSVKARGIRS 242

Query: 222 TFFKSQFSAQLAIDTHMGAAEVERALQVTLNEAER 257
           +   ++   ++ ++T + A EVE+A++  L E ER
Sbjct: 243 SMSGNRLWTEMNVETTIAACEVEKAVEEALKEVER 274

[Close]

BLAST of Lsi09G012630 vs. ExPASy TrEMBL
Match: A0A5A7UQX2 (Transcription factor bHLH92 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00150 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 7.9e-102
Identity = 215/279 (77.06%), Postives = 234/279 (83.87%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWHND FWLDAPISVP+ AP S+  P  QISAF+PYLS P T L  ++N   
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPLSAP-SSPPPATQISAFLPYLSAPPTGLLGQDNNNI 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKE-PTALVDLEREKCHRHMLNERTRR 120
            TTT   TT +TSY+SRNVNKRM+EYW +HW EKKE P +  DLEREKCHRHMLNER RR
Sbjct: 61  ATTT---TTAATSYDSRNVNKRMIEYWTKHWHEKKELPVSAGDLEREKCHRHMLNERMRR 120

Query: 121 EKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRN--LELEMAIAMKK 180
           EKQKQSYLALHS+LPKNTKNDKNSIVQSAARTIQEMK LEK LKRRN  LE+E+AIAMKK
Sbjct: 121 EKQKQSYLALHSMLPKNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIAIAMKK 180

Query: 181 KEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTH 240
           KEKEK    II+VA+ N SCGINSMLTVLNVLK+VG NSKAI ATFF SQFSAQLAIDTH
Sbjct: 181 KEKEK---RIINVALRNTSCGINSMLTVLNVLKTVGVNSKAIHATFFNSQFSAQLAIDTH 240

Query: 241 MGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHFNF 277
           MGAAEVERALQVTLNEAERKF+RQ  EGSKEIK ++F F
Sbjct: 241 MGAAEVERALQVTLNEAERKFRRQYSEGSKEIKDNYFKF 272

[Close]

BLAST of Lsi09G012630 vs. ExPASy TrEMBL
Match: A0A1S3CPU0 (transcription factor bHLH92 OS=Cucumis melo OX=3656 GN=LOC103502857 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 7.9e-102
Identity = 215/279 (77.06%), Postives = 234/279 (83.87%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWHND FWLDAPISVP+ AP S+  P  QISAF+PYLS P T L  ++N   
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPLSAP-SSPPPATQISAFLPYLSAPPTGLLGQDNNNI 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKE-PTALVDLEREKCHRHMLNERTRR 120
            TTT   TT +TSY+SRNVNKRM+EYW +HW EKKE P +  DLEREKCHRHMLNER RR
Sbjct: 61  ATTT---TTAATSYDSRNVNKRMIEYWTKHWHEKKELPVSAGDLEREKCHRHMLNERMRR 120

Query: 121 EKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRN--LELEMAIAMKK 180
           EKQKQSYLALHS+LPKNTKNDKNSIVQSAARTIQEMK LEK LKRRN  LE+E+AIAMKK
Sbjct: 121 EKQKQSYLALHSMLPKNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIAIAMKK 180

Query: 181 KEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTH 240
           KEKEK    II+VA+ N SCGINSMLTVLNVLK+VG NSKAI ATFF SQFSAQLAIDTH
Sbjct: 181 KEKEK---RIINVALRNTSCGINSMLTVLNVLKTVGVNSKAIHATFFNSQFSAQLAIDTH 240

Query: 241 MGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHFNF 277
           MGAAEVERALQVTLNEAERKF+RQ  EGSKEIK ++F F
Sbjct: 241 MGAAEVERALQVTLNEAERKFRRQYSEGSKEIKDNYFKF 272

[Close]

BLAST of Lsi09G012630 vs. ExPASy TrEMBL
Match: A0A0A0LIK3 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G193320 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.8e-99
Identity = 214/283 (75.62%), Postives = 235/283 (83.04%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPY-LSQPSTE-LEQENNQ 60
           MDD FPVEFWHND FWLDAPISVPV AP S   P +QISAF+PY LS P T  L Q+NN 
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPVSAPTS-PPPAKQISAFLPYDLSPPPTGLLGQDNNI 60

Query: 61  TTTTTTTII----TTTSTSYNSRNVNKRMVEYWRRHWEEKKE-PTALVDLEREKCHRHML 120
            TTT  T+I     + STSY+SRNVNKRM+EYWR+HW EKKE P +  DLEREKCHRHML
Sbjct: 61  ATTTAATVIASASASASTSYDSRNVNKRMIEYWRKHWHEKKELPVSAGDLEREKCHRHML 120

Query: 121 NERTRREKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRN--LELEM 180
           NER RREKQKQ YLALHS+LP+NTKNDKNSIVQSAARTIQEMK LEK LKRRN  LE+E+
Sbjct: 121 NERMRREKQKQCYLALHSMLPRNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEI 180

Query: 181 AIAMKKKEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQ 240
           AIAMKKKEK++G   II+VA+ N SCGINSMLTVLNVLK+VG NS AI ATFF SQFSAQ
Sbjct: 181 AIAMKKKEKKEG---IINVALANTSCGINSMLTVLNVLKTVGVNSNAIHATFFNSQFSAQ 240

Query: 241 LAIDTHMGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHF 275
           LAIDTHM  AEVERALQ+TLNEAERKFQRQ  EGSKEIK+S+F
Sbjct: 241 LAIDTHMRVAEVERALQLTLNEAERKFQRQHSEGSKEIKESYF 279

[Close]

BLAST of Lsi09G012630 vs. ExPASy TrEMBL
Match: A0A6J1KK97 (transcription factor bHLH92-like OS=Cucurbita maxima OX=3661 GN=LOC111494781 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 167/270 (61.85%), Postives = 205/270 (75.93%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWH D +WLD PISV  PAP        QISAFVPYL QP+    Q+NN   
Sbjct: 1   MDDGFPVEFWHTDLYWLDTPISVSDPAPG-------QISAFVPYLPQPAIGSGQKNNPIA 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRRE 120
            T             S N++KR+++YWR+ W+EKK+P  + DLEREK H+HMLNER RRE
Sbjct: 61  AT------------YSENIHKRVIKYWRKKWQEKKKPAEMGDLEREKSHQHMLNERMRRE 120

Query: 121 KQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEK 180
           K ++SY  LHS+LP  TKNDKNSIVQ AARTI+E+KA E +LK+RN+ELEMA++ KK+++
Sbjct: 121 KHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQ 180

Query: 181 EKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGA 240
           EKGTTP I VA+ NPS GINSML VLN+LK+VG N+KAI ATF  SQFS  +AI++HM A
Sbjct: 181 EKGTTP-IRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSQFSTHIAIESHMRA 240

Query: 241 AEVERALQVTLNEAERKFQRQCKEGSKEIK 271
           AEVERALQ+TL+EAERKFQRQC+EGS ++K
Sbjct: 241 AEVERALQMTLSEAERKFQRQCEEGSHDVK 250

[Close]

BLAST of Lsi09G012630 vs. ExPASy TrEMBL
Match: A0A6J1H311 (transcription factor bHLH92 OS=Cucurbita moschata OX=3662 GN=LOC111459950 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 5.5e-79
Identity = 169/263 (64.26%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWHND FWLDAPISVPVP  A      +Q SAFVPYLS+P+  +EQ+N    
Sbjct: 1   MDDTFPVEFWHNDLFWLDAPISVPVPVSAPAQ---QQKSAFVPYLSRPNFRIEQKNKLAA 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRRE 120
                          S +VNKR++EYWR+ W EKKE  AL DLEREKCHRHM+NERTRRE
Sbjct: 61  PAA------------SNSVNKRVIEYWRKQWHEKKEAAALGDLEREKCHRHMMNERTRRE 120

Query: 121 KQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEK 180
           ++KQSYL +HS+LPK TKNDKNSIVQ+AARTIQE++A E++LKRRN ELEMAIA K +E 
Sbjct: 121 REKQSYLGVHSLLPKKTKNDKNSIVQAAARTIQELRASEEMLKRRNSELEMAIAAKNREN 180

Query: 181 EKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAI-DTHMG 240
            KGT P I +  PNPS GI+SML VLNVLK+   N KAI A FF S FSAQLAI DTHMG
Sbjct: 181 AKGTKP-IRLEWPNPSAGIDSMLAVLNVLKTGRINPKAIHANFFNSLFSAQLAIDDTHMG 240

Query: 241 AAEVERALQVTLNEAERKFQRQC 263
            AEVER LQ T+ EA+ +F+RQC
Sbjct: 241 GAEVERVLQATVREADGRFRRQC 247

[Close]

BLAST of Lsi09G012630 vs. NCBI nr
Match: XP_038875776.1 (transcription factor bHLH92 [Benincasa hispida])

HSP 1 Score: 463.8 bits (1192), Expect = 1.1e-126
Identity = 242/290 (83.45%), Postives = 261/290 (90.00%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD+F VE+WHNDFFWLDAPISVPV  PASTS P RQISAFVPYL++P+T L QENN TT
Sbjct: 1   MDDSFSVEYWHNDFFWLDAPISVPV--PASTSAPARQISAFVPYLTRPATGLGQENNPTT 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRRE 120
           +     +TTTS+SYNSRNVNKRMVEYWR+HW EKKEPT+L D EREKCHRHMLNER RRE
Sbjct: 61  SAAAATVTTTSSSYNSRNVNKRMVEYWRKHWHEKKEPTSLGDFEREKCHRHMLNERMRRE 120

Query: 121 KQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEK 180
           KQKQSYLALHS+LPKNTKNDKNSI+QSA RTIQEMKALEK LKRRNLELEMAIA KKKEK
Sbjct: 121 KQKQSYLALHSMLPKNTKNDKNSIIQSATRTIQEMKALEKTLKRRNLELEMAIARKKKEK 180

Query: 181 EKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGA 240
           EKGTTPII+VA+ NPSCGINSML VLN LK+VG NSKAI ATFF SQFSAQLAIDTHMGA
Sbjct: 181 EKGTTPIINVALSNPSCGINSMLAVLNFLKTVGVNSKAIHATFFNSQFSAQLAIDTHMGA 240

Query: 241 AEVERALQVTLNEAERKFQRQCKEGSKEIKKSHFNFNNNNGAHEVGPEFE 291
           AEVERALQVTL+EAERKFQRQCKEGSKEIK++HFNFNN+ G H VGPEFE
Sbjct: 241 AEVERALQVTLDEAERKFQRQCKEGSKEIKETHFNFNNSRGTHHVGPEFE 288

[Close]

BLAST of Lsi09G012630 vs. NCBI nr
Match: XP_008465193.1 (PREDICTED: transcription factor bHLH92 [Cucumis melo] >KAA0057518.1 transcription factor bHLH92 [Cucumis melo var. makuwa] >TYK08199.1 transcription factor bHLH92 [Cucumis melo var. makuwa])

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-101
Identity = 215/279 (77.06%), Postives = 234/279 (83.87%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWHND FWLDAPISVP+ AP S+  P  QISAF+PYLS P T L  ++N   
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPLSAP-SSPPPATQISAFLPYLSAPPTGLLGQDNNNI 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKE-PTALVDLEREKCHRHMLNERTRR 120
            TTT   TT +TSY+SRNVNKRM+EYW +HW EKKE P +  DLEREKCHRHMLNER RR
Sbjct: 61  ATTT---TTAATSYDSRNVNKRMIEYWTKHWHEKKELPVSAGDLEREKCHRHMLNERMRR 120

Query: 121 EKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRN--LELEMAIAMKK 180
           EKQKQSYLALHS+LPKNTKNDKNSIVQSAARTIQEMK LEK LKRRN  LE+E+AIAMKK
Sbjct: 121 EKQKQSYLALHSMLPKNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEIAIAMKK 180

Query: 181 KEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTH 240
           KEKEK    II+VA+ N SCGINSMLTVLNVLK+VG NSKAI ATFF SQFSAQLAIDTH
Sbjct: 181 KEKEK---RIINVALRNTSCGINSMLTVLNVLKTVGVNSKAIHATFFNSQFSAQLAIDTH 240

Query: 241 MGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHFNF 277
           MGAAEVERALQVTLNEAERKF+RQ  EGSKEIK ++F F
Sbjct: 241 MGAAEVERALQVTLNEAERKFRRQYSEGSKEIKDNYFKF 272

[Close]

BLAST of Lsi09G012630 vs. NCBI nr
Match: XP_011649165.2 (transcription factor bHLH92 [Cucumis sativus] >KGN61628.1 hypothetical protein Csa_006720 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 5.8e-99
Identity = 214/283 (75.62%), Postives = 235/283 (83.04%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPY-LSQPSTE-LEQENNQ 60
           MDD FPVEFWHND FWLDAPISVPV AP S   P +QISAF+PY LS P T  L Q+NN 
Sbjct: 1   MDDTFPVEFWHNDHFWLDAPISVPVSAPTS-PPPAKQISAFLPYDLSPPPTGLLGQDNNI 60

Query: 61  TTTTTTTII----TTTSTSYNSRNVNKRMVEYWRRHWEEKKE-PTALVDLEREKCHRHML 120
            TTT  T+I     + STSY+SRNVNKRM+EYWR+HW EKKE P +  DLEREKCHRHML
Sbjct: 61  ATTTAATVIASASASASTSYDSRNVNKRMIEYWRKHWHEKKELPVSAGDLEREKCHRHML 120

Query: 121 NERTRREKQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRN--LELEM 180
           NER RREKQKQ YLALHS+LP+NTKNDKNSIVQSAARTIQEMK LEK LKRRN  LE+E+
Sbjct: 121 NERMRREKQKQCYLALHSMLPRNTKNDKNSIVQSAARTIQEMKGLEKTLKRRNSELEMEI 180

Query: 181 AIAMKKKEKEKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQ 240
           AIAMKKKEK++G   II+VA+ N SCGINSMLTVLNVLK+VG NS AI ATFF SQFSAQ
Sbjct: 181 AIAMKKKEKKEG---IINVALANTSCGINSMLTVLNVLKTVGVNSNAIHATFFNSQFSAQ 240

Query: 241 LAIDTHMGAAEVERALQVTLNEAERKFQRQCKEGSKEIKKSHF 275
           LAIDTHM  AEVERALQ+TLNEAERKFQRQ  EGSKEIK+S+F
Sbjct: 241 LAIDTHMRVAEVERALQLTLNEAERKFQRQHSEGSKEIKESYF 279

[Close]

BLAST of Lsi09G012630 vs. NCBI nr
Match: XP_023000539.1 (transcription factor bHLH92-like [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-79
Identity = 167/270 (61.85%), Postives = 205/270 (75.93%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWH D +WLD PISV  PAP        QISAFVPYL QP+    Q+NN   
Sbjct: 1   MDDGFPVEFWHTDLYWLDTPISVSDPAPG-------QISAFVPYLPQPAIGSGQKNNPIA 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRRE 120
            T             S N++KR+++YWR+ W+EKK+P  + DLEREK H+HMLNER RRE
Sbjct: 61  AT------------YSENIHKRVIKYWRKKWQEKKKPAEMGDLEREKSHQHMLNERMRRE 120

Query: 121 KQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEK 180
           K ++SY  LHS+LP  TKNDKNSIVQ AARTI+E+KA E +LK+RN+ELEMA++ KK+++
Sbjct: 121 KHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQ 180

Query: 181 EKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGA 240
           EKGTTP I VA+ NPS GINSML VLN+LK+VG N+KAI ATF  SQFS  +AI++HM A
Sbjct: 181 EKGTTP-IRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSQFSTHIAIESHMRA 240

Query: 241 AEVERALQVTLNEAERKFQRQCKEGSKEIK 271
           AEVERALQ+TL+EAERKFQRQC+EGS ++K
Sbjct: 241 AEVERALQMTLSEAERKFQRQCEEGSHDVK 250

[Close]

BLAST of Lsi09G012630 vs. NCBI nr
Match: XP_023548519.1 (transcription factor bHLH92 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 6.6e-79
Identity = 169/263 (64.26%), Postives = 198/263 (75.29%), Query Frame = 0


Query: 1   MDDNFPVEFWHNDFFWLDAPISVPVPAPASTSTPTRQISAFVPYLSQPSTELEQENNQTT 60
           MDD FPVEFWHND FWLDAPISVPVP  A      +Q SAFVPYLS+P+  +EQ+NN   
Sbjct: 1   MDDTFPVEFWHNDLFWLDAPISVPVPVSAPAQ---QQKSAFVPYLSRPNFRIEQKNN--- 60

Query: 61  TTTTTIITTTSTSYNSRNVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRRE 120
                 +        S +VNKR++EYWR+ W EKKE  AL DLEREKCHRHM+NERTRRE
Sbjct: 61  ------LAPAPVPAASNSVNKRVIEYWRKQWHEKKEAAALGDLEREKCHRHMMNERTRRE 120

Query: 121 KQKQSYLALHSILPKNTKNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEK 180
           ++KQSYL +HS+LPK TKNDKNSIVQ+AARTIQE++A E++LKRRN ELEMAIA K +E 
Sbjct: 121 REKQSYLGVHSLLPKKTKNDKNSIVQAAARTIQELRASEEMLKRRNTELEMAIAAKNREN 180

Query: 181 EKGTTPIISVAMPNPSCGINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAI-DTHMG 240
            KGT P I + + NPS GI+SML VLNVLK+   N KAI A FF S FSAQLAI DT MG
Sbjct: 181 AKGTKP-IRLELANPSSGIDSMLAVLNVLKTGRINPKAIHANFFNSLFSAQLAIDDTRMG 240

Query: 241 AAEVERALQVTLNEAERKFQRQC 263
            AEVER LQ T+ EA+R+F+RQC
Sbjct: 241 GAEVERVLQATVREADRRFRRQC 250

[Close]

BLAST of Lsi09G012630 vs. TAIR 10
Match: AT5G43650.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-29
Identity = 83/180 (46.11%), Postives = 110/180 (61.11%), Query Frame = 0


Query: 78  NVNKRMVEYWRRHWEEKKEPTALVDLEREKCHRHMLNERTRREKQKQSYLALHSILPKNT 137
           NV KRMV   R++WEEKK   A    E+E+  RHML ERTRREKQKQSYLALHS+LP  T
Sbjct: 60  NVKKRMVNLLRKNWEEKKNTVA---PEKERSRRHMLKERTRREKQKQSYLALHSLLPFAT 119

Query: 138 KNDKNSIVQSAARTIQEMKALEKILKRRNLELEMAIAMKKKEKEKGTTPIISVAMPNPSC 197
           KNDKNSIV+ A   I +++ L+K L RR   +E   A    ++   T   + V +  P  
Sbjct: 120 KNDKNSIVEKAVDEIAKLQRLKKELVRRIKVIEEKSAKDGHDEMSETK--VRVNLKEPLS 179

Query: 198 GINSMLTVLNVLKSVGANSKAIRATFFKSQFSAQLAIDTHMGAAEVERALQVTLNEAERK 257
           G++SML  L+ LKS+G   K + A F   +FSA + I+T +   EVE+ ++  L E E K
Sbjct: 180 GLDSMLEALHYLKSMGTKLKTVHANFSPQEFSATMTIETQIRGEEVEKRVERRLQETEWK 234

The following BLAST results are available for this feature:

BLAST of Lsi09G012630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIX5	4.2e-28	46.11	Transcription factor bHLH92 OS=Arabidopsis thaliana OX=3702 GN=BHLH92 PE=1 SV=1	[more]
Q75KV9	2.2e-16	38.06	Transcription factor BHLH148 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH148...	[more]

BLAST of Lsi09G012630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQX2	7.9e-102	77.06	Transcription factor bHLH92 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CPU0	7.9e-102	77.06	transcription factor bHLH92 OS=Cucumis melo OX=3656 GN=LOC103502857 PE=4 SV=1	[more]
A0A0A0LIK3	2.8e-99	75.62	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G193320 PE=4 S...	[more]
A0A6J1KK97	1.1e-79	61.85	transcription factor bHLH92-like OS=Cucurbita maxima OX=3661 GN=LOC111494781 PE=...	[more]
A0A6J1H311	5.5e-79	64.26	transcription factor bHLH92 OS=Cucurbita moschata OX=3662 GN=LOC111459950 PE=4 S...	[more]

BLAST of Lsi09G012630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875776.1	1.1e-126	83.45	transcription factor bHLH92 [Benincasa hispida]	[more]
XP_008465193.1	1.6e-101	77.06	PREDICTED: transcription factor bHLH92 [Cucumis melo] >KAA0057518.1 transcriptio...	[more]
XP_011649165.2	5.8e-99	75.62	transcription factor bHLH92 [Cucumis sativus] >KGN61628.1 hypothetical protein C...	[more]
XP_023000539.1	2.3e-79	61.85	transcription factor bHLH92-like [Cucurbita maxima]	[more]
XP_023548519.1	6.6e-79	64.26	transcription factor bHLH92 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi09G012630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43650.1	3.0e-29	46.11	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 112..161 e-value: 0.0016 score: 27.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 107..155 e-value: 1.6E-6 score: 28.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 106..155 score: 11.299446
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 106..184 e-value: 4.4E-6 score: 28.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 105..173
IPR044658	Transcription factor bHLH92/bHLH041-like	PANTHER	PTHR46665	TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED	coord: 1..263
None	No IPR available	PANTHER	PTHR46665:SF6	TRANSCRIPTION FACTOR BHLH92	coord: 1..263
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 111..162 e-value: 2.04233E-10 score: 53.3391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G012630.1	Lsi09G012630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding