Lsi09G012200 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGTGGAATTCATGGTATCTTGGTGGTTGATCTTGTAAAGGAGGGGGGTAATCGTCATCTCCAGAAGAATCAGAGTCACATCCCAAAATAGGGCGAGGAAAACCATGTGCAAAATATCTATACTGAAGTTGGGCTGGAAATTGATTCTGCAGTTGATTTTCACGAAAAAAATTCTTGGTTTGGGCCCCTGGAAATGTTTCTTTCAGGTTCTTATCGTTGATTTAAGCCTCTGTAGGAATTCTTGCCATTTCTTGGTTTCTTGGAAAATTTTAGAGAGGGTTTTGTTGTCTTGTCTTCTTTGTTGTTGCATACGAGGTTCCCTAATTCTTGGATTTCTTGATGAACATGGGCTTGTTCTTGGACTCGAGGTTGGTTATTTGATAATCTTCCTATCTCCCGAGTAAGAAGTTCAATCGCTTGTTGCACTCCCGCCATGCTGCCACTCATTTCTCCTAAGGTGGCTTCAACAGTAGTTAACCTTTGGTTATGGCTCGGGGAGAAGAAGAAGATGCTTTCGCGTCATGAGGTGGAGGATCATTATTTTTGTTGGCGTTTTTCCCGCCATCATATGCCCTTCACGAGACGCTTTGATACCAATTGATGAAAGTTTGGAACAAAGTTTTTTTTTATTGAGTGAATGAAGAGAAGAATAACAAGGGTATTTATAGAGGTTGAAGCGACCGGCTGCCTGCTTGATTAAAACAATCAGCAGCCAAAGATTAAAACGACCAACTTAAGGAATTACTTCGTGAACTAAAGCATAAGTGGAAAAAGGACAAAACAATTACAAAACACGGGCTTAACTCAACCTTAGGCTAAAACCCGAGAATACCCCTACATTATTTGGAATGAGGAATGAAGATTCATGTGCATATTGCACTCACATGACCTCATACTTGATTGTTGTTCTAGTTGATTGCTAATTGATAATGAATGATGACGGGTGTTATGACGGATAATGACATGTGCTAGACTACAACTATGCATCTTTCCCACTGTCAAACGAAAGTACTAATTGAATGGAAGTATTGATTGACTGAAGGTTCTGTTTGAATGAAAGTATTGACCGTATGATAACTTTGTATTTGAAAGTATTGAAAGATTTAACTTTATCAAGAGTATGAAAGTTTGTTTATTAAAGATATTGAAAGTTTATTTGGACGTTTTGGATTTATTTTTTGGTAAATTTTGGATTTATTGAAAGACCATTTGAAAGTTTTAGGTTGAAACCTTTAGTTTGGAAAGCTTATTTGATTGAAAGATTTTGATTTTGAAACTACCATTTGTAACAAAGTTTTAACTAGAATCTTTACAATGATTTATATTTTTGTTTATGCAAGTTTTGAAAGCAAATGAATTCCAAATCTTGATATGAAAATTGCTTATTGAGTATTTTTGTACTCATTTTTATTTTTTCAAAATGTTTTCAGATGAAGGATCAAGTGATAATTCTGAAGGAAGCGAAGTTTAGCGTTCTAATGCAAGACATCAAAGAACGTTTCTTTTAGGACTTGGATAGTTTGACTTAGAACTTATATGTAATATGTTACTCCCACTGAAGTGTGTAATTTGTTTGCTTCTAATTGTTATGTTTTCTGCATTTTTGTTTTATTAGTTGTATTGAAAAATACGGGTTGTTACACCATCACCACCATGTTGCCTCCTGAGGGAGCGCCAAGGAAGCGGAAGGAGGTTGAGCCGTATGTGAAGCCGAAAGTTGCAGGAGCCGACTCAGTTTCGGCGAATCGGCTTCTAGCTGGCTATCTCGCTCATGAGTTTCTCAGCAACGGCACTTTGTTTGGGGAGAAGTATGAGCCGGCTCAAAGTGAAGCCATTGGAATGTCTAACTCGCAGTCAACTGAGTGTAAGAGGACAAAGCCGGAAGCCGCCTCGCCGAGCATCAGAAAAGGAAATCATAGCTATGCTGAGGTGGCAAGCATCCTGAAGATGGATGGGACACACTTGCCTGGAATTGTTAACCCGGCGCAGCTCGCTTGGTGGATTAAAATGTAATTGCCAACGTGGCGTCTTTTGATTGGATGTATAATTTTACTTTCTAGTTTACGTTGAAATTTCTCATATCTCAAAACCACAAGAAAAATGAAGTAGAGATGAGTTCTCTCTCTCACTGAATTTGCTTTTGAGAAATTTTCTCTTTCCCTTTTGTTCTCTTGAATCTCTCATCAGCTTAGTGATATCTGTTACTAATCAATGTACAGGACCGAGTTCACAAATGGAGAATTGATTCTGTTTGTTAATAGTTTTGTAATCGTTGTAATCGTACAGTTTCTCTTTTCATATAAATGATTATACATTACTCTTTTTGTTCTTGTTCTGTTTCATATTTTTTATTGCTTTGATTTTTGAAATACAGGTCTGTAATGGATGCATAA ATGGAGGGAGCCGACTCAGTTTCGGCGAATCGGCTTCTAGCTGGCTATCTCGCTCATGAGTTTCTCAGCAACGGCACTTTGTTTGGGGAGAAGTATGAGCCGGCTCAAAGTGAAGCCATTGGAATGTCTAACTCGCAGTCAACTGAGTGTAAGAGGACAAAGCCGGAAGCCGCCTCGCCGAGCATCAGAAAAGGAAATCATAGCTATGCTGAGGTGGCAAGCATCCTGAAGATGGATGGGACACACTTGCCTGGAATTGTTAACCCGGCGCAGCTCGCTTGGTGGATTAAAATGTCTGTAATGGATGCATAA ATGGAGGGAGCCGACTCAGTTTCGGCGAATCGGCTTCTAGCTGGCTATCTCGCTCATGAGTTTCTCAGCAACGGCACTTTGTTTGGGGAGAAGTATGAGCCGGCTCAAAGTGAAGCCATTGGAATGTCTAACTCGCAGTCAACTGAGTGTAAGAGGACAAAGCCGGAAGCCGCCTCGCCGAGCATCAGAAAAGGAAATCATAGCTATGCTGAGGTGGCAAGCATCCTGAAGATGGATGGGACACACTTGCCTGGAATTGTTAACCCGGCGCAGCTCGCTTGGTGGATTAAAATGTCTGTAATGGATGCATAA MEGADSVSANRLLAGYLAHEFLSNGTLFGEKYEPAQSEAIGMSNSQSTECKRTKPEAASPSIRKGNHSYAEVASILKMDGTHLPGIVNPAQLAWWIKMSVMDA Homology
BLAST of Lsi09G012200 vs. ExPASy TrEMBL
Match: A0A0A0LI65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 3.7e-38 Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 0
BLAST of Lsi09G012200 vs. ExPASy TrEMBL
Match: A0A5A7UAS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00360 PE=4 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37 Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 0
BLAST of Lsi09G012200 vs. ExPASy TrEMBL
Match: A0A6J1KXG9 (uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36 Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 0
BLAST of Lsi09G012200 vs. ExPASy TrEMBL
Match: A0A6J1H3W4 (uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC111460190 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34 Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 0
BLAST of Lsi09G012200 vs. ExPASy TrEMBL
Match: A0A6J1HJY7 (uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC111464257 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32 Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 0
BLAST of Lsi09G012200 vs. NCBI nr
Match: XP_038875618.1 (uncharacterized protein LOC120068023 [Benincasa hispida] >XP_038875619.1 uncharacterized protein LOC120068023 [Benincasa hispida] >XP_038875620.1 uncharacterized protein LOC120068023 [Benincasa hispida]) HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43 Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 0
BLAST of Lsi09G012200 vs. NCBI nr
Match: KGN61585.1 (hypothetical protein Csa_006307 [Cucumis sativus]) HSP 1 Score: 167.2 bits (422), Expect = 7.6e-38 Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 0
BLAST of Lsi09G012200 vs. NCBI nr
Match: KAA0050715.1 (hypothetical protein E6C27_scaffold560G00090 [Cucumis melo var. makuwa] >TYK01448.1 hypothetical protein E5676_scaffold772G00360 [Cucumis melo var. makuwa]) HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36 Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 0
BLAST of Lsi09G012200 vs. NCBI nr
Match: XP_023547636.1 (uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.1 uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36 Identity = 81/99 (81.82%), Postives = 90/99 (90.91%), Query Frame = 0
BLAST of Lsi09G012200 vs. NCBI nr
Match: XP_023006321.1 (uncharacterized protein LOC111499092 [Cucurbita maxima]) HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36 Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 0
BLAST of Lsi09G012200 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 96.3 bits (238), Expect = 1.5e-20 Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 0
BLAST of Lsi09G012200 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 ) HSP 1 Score: 75.9 bits (185), Expect = 2.2e-14 Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0
BLAST of Lsi09G012200 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.9 bits (180), Expect = 8.2e-14 Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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