Lsi09G009760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G009760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	mediator of RNA polymerase II transcription subunit 1 isoform X1
Location	chr09: 12986472 .. 12992475 (-)
RNA-Seq Expression	Lsi09G009760
Synteny	Lsi09G009760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAGAGACGTTTGTTTGTTTGTTTGTTTGATTTTCAGAGTGTCAAAGAGAAACCAAAGACGAAACTTATTTTTATTTTTATTTTTATTTTTCACATTCGTTCGCCGTCTCCCCTTCAAGACTTCTTCTTCTATACGCTCGCTTCATCTTCTCTCTTTCTCTCTATCTCTCTCTCAGCCGTTCCGTTTCTCTCTGCCGTTTTACGTTCTCCCCGCCACCGTCACGGCGGCTGAAGCTGACCGAACCCAACCCAACCCAACAAACAGACAAAAACCCTATTCGCTATTCCGAACAACCCAAGCCTCATTTTCTCTCATTCCCAATCCCTTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCGCCGCTTTCTTTCTTCACACTCTGAAACTCGCTCTGTCTATCTATTTTGTTGTTGCCCTCTTCAGACGCATTTCTTTTTCTTTTGGGGATATACAGCAACCACTGGGAGGCAGTTATTGAAACAGTTGCGCCTTCTGGGGTTCGTCAATCAGTCTTGAGGGTAGGGTTAGTTCTTCGTCTTCATCGGATATCTCACAGGTTATATTATCTATTTCTTGTGTATTTTTCTTGCGGGTTTGGACCTCTGCGGAAGTTTTTTTTTTCGGAGGGTGCATATTTGGTTTAGGGTTTCTGATATTTTTCTTTTGGGCACATTCAATCGGAGTTCGGATTCTGGTTATTCCAATTTCTTATTTCGTTAGGGTTTCTTTTTGTTCTCTGATCGAACTGTTTTGACGGGGACAATCTTCGGTTTTGGAATTGCTTCATCTCTTTATTCTTGAGGTATACCTTCTTTATATTTCTGCATCTCAACCGATTCCCTCAAAGATGAGGGTTTTCCGAGCGTGTTTTGCTGACCGAATCTACACTTAATCGAACACGGAGGCCGGGAGACGATAGTGAGGGCCTTTCCTCTTTTACCATTCTTTTCAATTGAACCGCTTCATCTTATCCCTGCTATTTCCTCTGTTTTCGTCATCTGATGTTCCACTCCCGTATGAGAATTAGGTTATATTGATTTTGCACATAAGATAAGATAAATCCCGTTCAGAATGCGTTCAGCTTGTAGCCAAATTGCTAGCTACTTCCTTGAATTCCGGCGGTCGTGAAGTAGGATAGTTGTAGAAGATAGACTTCTTTAGTACCATTCAGGACATAAAGTTTGAGAACCATCCTCTGGGTTCACTACCGTGCGCGAGTTTGCAACTCTGAAGCAATTCACTGCGCATGTTTATCTTTGCTGGACCCCTGGATATGCCATAAAGTTGATGACACATATGGTTTGTTGCCGTGACTTGCATAGTCAGGGATGCTCGTGAAAGTTTATCCAGCTTAAAATAGTGGTTAGGCATTTGGAATAATAAAGTACAGGCTAGGGTTTTATAAATTCCTCTGCACAAGGAGTACAGTTTTTGGAAATTTGAGGTGGTAAAGAAGGCAAGAAGTGCTTTTTCTTCTGATATTTTGATCATGTTCAATATTCCTTATGGAAAGAAGTGAACCCACATTAGTTCCAGAATGGTTGAGAAGTACTGGAAGCGTTACTGGTGGCAGCAATTCAAACCACCATTTTCCGTCGTCTTCTTCCCACTCAGGTACTGCTTTATTTGTTTCTTTCTTTTCTTTTTTTATTGTTGCATGCTTCCAATAAAGATGCGGTCACTTACTACTGTCTTGCCTCTGTTTTGATATTGTGAACGCTGTTAATGTGTATCCTGTGCTGTTGTGTAGATGTGCCCTCTCTATCTCAATCGAGAAATAGAATTTCCAAGACCACTGGCGATTTTGACACTTCGCGTTCTGCTTTTCTGGATCGGACATCTTCATCAAATTCAAGGAGAAGTTCAAGCAATGGTTCTTCCAAACATGCATATAGTAGCTTTAACAGGGGTCATCGTGATAAGGATCGTGAGAAAGAAAAGGATAGGTTAAACTTCGGGGATAATTGGGACCGTGACTCTCATGACCCTCTGGGGAAGATTCTTTCCAACAGGATTGATAAGGATGCTTTGCGGCGGTCCCATTCAATGGTATCCAGGAAGCAAGGTGAGCGCGAGTTGTTTCATAGAAGAGGTGCAACAGAATTAAAAAGTCACAACAATAGCAATGGTATTCTTTCTGGAACTAGTGTCGGCAGTAGCATTCAGAAAGCTGTATTTGAAAAGGATTTCCCATCGCTGGGATCTGAAGAAAAGCAGGGAGCATCAGAAATTGGAAGAGTTTCATCTCCTGGTTTGAGCTCGCCAGTTCAAAGCTTGCCTATTGGCAATTCAGCCTTAATTGTCGGTGGAGAGGGATGGACCTCTGCTCTTGCTGAGGTGCCCAGTATGATTGGAAACACCACAGGGTCATCGTCATTTCAACAAACTGTTCCTGCTACATCAGGGGCAGGGCCTCTGAGCATGACAGCTGGACTTAATATGGCTGAAGCGTTGGTGCAGGCTCCATCTCGAGCTCGTGCTGCTCCCCAGGTATCTGAGGTACCATACTAACCTTCTTGTGCTGTATATTATGTTCTCCTTTTGATCTAACAGTCTCATCCTTTACCCCCACTTTGGTAGTTATCTGTCAAGACCCAGAGGCTTGAGGAGTTGGCTATTAAACAGTCCAGGCAATTAATACCAGTGACGCCTTCTATGCCAAAAGCTATGGTAATTGGAGCTAATGCAATTGTTGAATCTTTGTTGTTAGATCTTCTGCTACTTCCGTATATTTAAATTATTTGGTGTTTGTTGATTTGAAAATTTAAAGGTCCGTAATTAAAATATATAAGAGAACTGAGAACCATCTGCACGGTACCTAGACAACTTGTGCCAATCTCTGATTTCAGCTGGGACTAATACTCTCTTCGAAGCTACTTTTGTGTTGTAGTATTAGGCACTTAAGATGTATAGATAAAAAAAAGTCATTTTTGGGTAAATTATACTGAAAACTATGTGACAAAGATACTATATGTTTTGACATTTTTCTGCATGTGCTGTTAGTGGTTGGTGACTGGTAATATAAATTTTTGGATTTAGGTTGTTAAATAAACTCGGCTACTACATTTTAGGAACTGTATATTTCTTGTGGACGTTTGTTATTCAAGTGTTCTATCTCTTCAACTTACTTGTTGACTAAAGAACAGTGTTTATGTGTTAGATAGCGGAAGTCAAAACATTTGTTAAAAGTTCCAAAGTCATTTGCAATGTGGCTAGATAACTAGACCACTTTCCCCCCTTCTATTTGATGAGAAACTCACTTTAAGGACGATTGGAAGAACAAAATACAAGAGCCCCAGAACAAGAGAGGGAGGGTTAGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTGGCGTGCAGAGGGCTTCTAAACCATCTAAATCTAATGCGTTCTTTGATTTAGGAATTGGTTATTTTAAATTCTTCAAAGGGTTTTGTTTTTGTTTTCTTGCTTTGACCCTTTTGGAAATTTGTAAGAACTAGATGATAGGAAGGAGATAACCAGATTTGATTTTGGATCCCATTTAATAGTGTGCATATATGTGCTTTGCTACTTTTGACACTTTGCAGACTGAATTATCTATGGTTAACCATTTTTTATTCTCTCTCAAGGATGGAAAACGCCAGTGTTAGATTAAATATGCTTTAAAGGAAGTGTGAAGTTTCTATTAGTAACGTTCTTCATTTGAGATTGTTGTGCTGTAGGCAATATGTCACTGATGGCTAGTATTCTTTGTTTGTTAACTTGTTATATTTGGTAGGAAAGTTTCTGTTAACTGATTGCCAACCCCTCTTCAGTTTTAATAGTTGTAACTTGACTGAGCATTCCTCTTCTGAAAGGTTCTCATTTGTGTTCTGTTTTGTTTTTTGAAGCTGATGTGTAAATTGTTGTTGAGTTTCAGTATGGTGATGTACTAAATTTGCTTAGCAGTATAGTTCTTAAAATAGTCTTAGAACAAAAAAAACGTATATTATTCTGTTGTGTTTTATTTAATGATTTTAAAAATAATTTATTCGCATCTGATCAATAATCTTTTAAAAGTTTAAATAAATGGATTTAAATATGTTATTCTTATTTACATTCTAAAGAAATAAATGAAAATTAAAAAGCGGACCATATCTTTGCTGATAATCTTTAGTAGACTTGTCTGTAAAAACAATTTTGATAAAATCCATCCAGGAAGTTCTCCACCCTTGTAATATGAATATAGTTAGTTTTTACATTTTGAAAAATTCCCTCTATACCATGGTAAAATTCTAATACGGAATATTGATTTTGTCTAGGAATACACATCTCTCATTATTATATCTAACTGCAAATCTTCTGTTTTCCCCCTTAGATAATCATTAGCGTTTTTGTGTTTTTTGTTTGACAGGTGCTTAATTCTTCGGATAAATCAAAGCCCAAACTAGCATCAAGAACTGGAGAACTTAATGTAGCCATCAAGGGTGGACAGCCACCGCCCTTGTCAGTTCATGCCAACCAATCTCGTGGAGGACATGTCAAGTCCGATGCTCAAAAGATTTCTCATGGGAAGTTTCTTGTTTTGAAACCTGTACGAGAAAATGGTCTCTCCCTTGCAGCAAAGGATGTTTCAAGTCCGACTAGTAATGCAAACAGCATGGCAGCAAACAGCCAGTTCGCTCTTGCACCTTCAGTTCCACATGCTCCTTTGAGAAGCCCAAATAATACAAATGTTTCTTCTGTGGAGCGCAAAATTGCTAGCTTAGATCTCAAATCCGGAACAACTTTGGAAAAAAGACCGTCCTTATCTCAAGTCCAGAGCCGGAATGATTTCTTTAACCTCATTAAGAAGAAAACTTCACTGAGTTCTTCTGCTGTTCTCTCGGATTCATGCTCTTCTGTGAAATCTCCTTCAATTGGCCAATCTAGTGAACTAACAAGGGAAGAAATCGACATGCCTGCAAGTCCTCGTGTTATTGAAAATGGTACTGTGGAGAATAGAAATGGAGATAGTTCTGAAGAGGTTCGAGCATCTTGTGACAGTGGTGAAAAAACTGAGAGCCACGTTACTGCAGAATCTCTAGATGAAGAGGAGGCTGCTTTTCTTCGTTCTCTTGGCTGGGATGAAAACTGTGGTGAGGACGAAGGCCTTACTGAAGAAGAAATCAATTCTTTCTATCGGGAGGTAAACAGATACTTCTATTGCTTTCATTAGTTCCCCACTACAATGCTTTTCAAATACTGTTCTTTTCTCTGTTAGCTGATGAAGTTGTAAATATAATTCTTAATTGCAGTACATGAACTTGAAGCCATCTCTAAAAATGGGCCGATGCATTCAGCCAAAGATATTTGTGCCATCTGAATCTCATGAGGACAGCAAGGATGGAGGAGCCGGTTCTGAATTGAGCTCATCTGACTCGGAAGCCTGA

mRNA sequence

TGTAGAGACGTTTGTTTGTTTGTTTGTTTGATTTTCAGAGTGTCAAAGAGAAACCAAAGACGAAACTTATTTTTATTTTTATTTTTATTTTTCACATTCGTTCGCCGTCTCCCCTTCAAGACTTCTTCTTCTATACGCTCGCTTCATCTTCTCTCTTTCTCTCTATCTCTCTCTCAGCCGTTCCGTTTCTCTCTGCCGTTTTACGTTCTCCCCGCCACCGTCACGGCGGCTGAAGCTGACCGAACCCAACCCAACCCAACAAACAGACAAAAACCCTATTCGCTATTCCGAACAACCCAAGCCTCATTTTCTCTCATTCCCAATCCCTTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCGCCGCTTTCTTTCTTCACACTCTGAAACTCGCTCTGTCTATCTATTTTGTTGTTGCCCTCTTCAGACGCATTTCTTTTTCTTTTGGGGATATACAGCAACCACTGGGAGGCAGTTATTGAAACAGTTGCGCCTTCTGGGGTTCGTCAATCAGTCTTGAGGGTAGGGTTAGTTCTTCGTCTTCATCGGATATCTCACAGGTTATATTATCTATTTCTTGTGTATTTTTCTTGCGGGTTTGGACCTCTGCGGAAGTTTTTTTTTTCGGAGGGTGCATATTTGGTTTAGGGTTTCTGATATTTTTCTTTTGGGCACATTCAATCGGAGTTCGGATTCTGGTTATTCCAATTTCTTATTTCGTTAGGGTTTCTTTTTGTTCTCTGATCGAACTGTTTTGACGGGGACAATCTTCGGTTTTGGAATTGCTTCATCTCTTTATTCTTGAGGTATACCTTCTTTATATTTCTGCATCTCAACCGATTCCCTCAAAGATGAGGGTTTTCCGAGCGTGTTTTGCTGACCGAATCTACACTTAATCGAACACGGAGGCCGGGAGACGATAGTGAGGGCCTTTCCTCTTTTACCATTCTTTTCAATTGAACCGCTTCATCTTATCCCTGCTATTTCCTCTGTTTTCGTCATCTGATGTTCCACTCCCGTATGAGAATTAGGTTATATTGATTTTGCACATAAGATAAGATAAATCCCGTTCAGAATGCGTTCAGCTTGTAGCCAAATTGCTAGCTACTTCCTTGAATTCCGGCGGTCGTGAAGTAGGATAGTTGTAGAAGATAGACTTCTTTAGTACCATTCAGGACATAAAGTTTGAGAACCATCCTCTGGGTTCACTACCGTGCGCGAGTTTGCAACTCTGAAGCAATTCACTGCGCATGTTTATCTTTGCTGGACCCCTGGATATGCCATAAAGTTGATGACACATATGGTTTGTTGCCGTGACTTGCATAGTCAGGGATGCTCGTGAAAGTTTATCCAGCTTAAAATAGTGGTTAGGCATTTGGAATAATAAAGTACAGGCTAGGGTTTTATAAATTCCTCTGCACAAGGAGTACAGTTTTTGGAAATTTGAGGTGGTAAAGAAGGCAAGAAGTGCTTTTTCTTCTGATATTTTGATCATGTTCAATATTCCTTATGGAAAGAAGTGAACCCACATTAGTTCCAGAATGGTTGAGAAGTACTGGAAGCGTTACTGGTGGCAGCAATTCAAACCACCATTTTCCGTCGTCTTCTTCCCACTCAGATGTGCCCTCTCTATCTCAATCGAGAAATAGAATTTCCAAGACCACTGGCGATTTTGACACTTCGCGTTCTGCTTTTCTGGATCGGACATCTTCATCAAATTCAAGGAGAAGTTCAAGCAATGGTTCTTCCAAACATGCATATAGTAGCTTTAACAGGGGTCATCGTGATAAGGATCGTGAGAAAGAAAAGGATAGGTTAAACTTCGGGGATAATTGGGACCGTGACTCTCATGACCCTCTGGGGAAGATTCTTTCCAACAGGATTGATAAGGATGCTTTGCGGCGGTCCCATTCAATGGTATCCAGGAAGCAAGGTGAGCGCGAGTTGTTTCATAGAAGAGGTGCAACAGAATTAAAAAGTCACAACAATAGCAATGGTATTCTTTCTGGAACTAGTGTCGGCAGTAGCATTCAGAAAGCTGTATTTGAAAAGGATTTCCCATCGCTGGGATCTGAAGAAAAGCAGGGAGCATCAGAAATTGGAAGAGTTTCATCTCCTGGTTTGAGCTCGCCAGTTCAAAGCTTGCCTATTGGCAATTCAGCCTTAATTGTCGGTGGAGAGGGATGGACCTCTGCTCTTGCTGAGGTGCCCAGTATGATTGGAAACACCACAGGGTCATCGTCATTTCAACAAACTGTTCCTGCTACATCAGGGGCAGGGCCTCTGAGCATGACAGCTGGACTTAATATGGCTGAAGCGTTGGTGCAGGCTCCATCTCGAGCTCGTGCTGCTCCCCAGGTATCTGAGTTATCTGTCAAGACCCAGAGGCTTGAGGAGTTGGCTATTAAACAGTCCAGGCAATTAATACCAGTGACGCCTTCTATGCCAAAAGCTATGGTAATTGGAGCTAATGCAATTGTTGAATCTTTGTTGTTAGATCTTCTGCTACTTCCGTTGTTAAATAAACTCGGCTACTACATTTTAGGAACTGTATATTTCTTGTGGACGTTTGTTATTCAAGTGCTTAATTCTTCGGATAAATCAAAGCCCAAACTAGCATCAAGAACTGGAGAACTTAATGTAGCCATCAAGGGTGGACAGCCACCGCCCTTGTCAGTTCATGCCAACCAATCTCGTGGAGGACATGTCAAGTCCGATGCTCAAAAGATTTCTCATGGGAAGTTTCTTGTTTTGAAACCTGTACGAGAAAATGGTCTCTCCCTTGCAGCAAAGGATGTTTCAAGTCCGACTAGTAATGCAAACAGCATGGCAGCAAACAGCCAGTTCGCTCTTGCACCTTCAGTTCCACATGCTCCTTTGAGAAGCCCAAATAATACAAATGTTTCTTCTGTGGAGCGCAAAATTGCTAGCTTAGATCTCAAATCCGGAACAACTTTGGAAAAAAGACCGTCCTTATCTCAAGTCCAGAGCCGGAATGATTTCTTTAACCTCATTAAGAAGAAAACTTCACTGAGTTCTTCTGCTGTTCTCTCGGATTCATGCTCTTCTGTGAAATCTCCTTCAATTGGCCAATCTAGTGAACTAACAAGGGAAGAAATCGACATGCCTGCAAGTCCTCGTGTTATTGAAAATGGTACTGTGGAGAATAGAAATGGAGATAGTTCTGAAGAGGTTCGAGCATCTTGTGACAGTGGTGAAAAAACTGAGAGCCACGTTACTGCAGAATCTCTAGATGAAGAGGAGGCTGCTTTTCTTCGTTCTCTTGGCTGGGATGAAAACTGTGGTGAGGACGAAGGCCTTACTGAAGAAGAAATCAATTCTTTCTATCGGGAGTACATGAACTTGAAGCCATCTCTAAAAATGGGCCGATGCATTCAGCCAAAGATATTTGTGCCATCTGAATCTCATGAGGACAGCAAGGATGGAGGAGCCGGTTCTGAATTGAGCTCATCTGACTCGGAAGCCTGA

Coding sequence (CDS)

ATGGAAAGAAGTGAACCCACATTAGTTCCAGAATGGTTGAGAAGTACTGGAAGCGTTACTGGTGGCAGCAATTCAAACCACCATTTTCCGTCGTCTTCTTCCCACTCAGATGTGCCCTCTCTATCTCAATCGAGAAATAGAATTTCCAAGACCACTGGCGATTTTGACACTTCGCGTTCTGCTTTTCTGGATCGGACATCTTCATCAAATTCAAGGAGAAGTTCAAGCAATGGTTCTTCCAAACATGCATATAGTAGCTTTAACAGGGGTCATCGTGATAAGGATCGTGAGAAAGAAAAGGATAGGTTAAACTTCGGGGATAATTGGGACCGTGACTCTCATGACCCTCTGGGGAAGATTCTTTCCAACAGGATTGATAAGGATGCTTTGCGGCGGTCCCATTCAATGGTATCCAGGAAGCAAGGTGAGCGCGAGTTGTTTCATAGAAGAGGTGCAACAGAATTAAAAAGTCACAACAATAGCAATGGTATTCTTTCTGGAACTAGTGTCGGCAGTAGCATTCAGAAAGCTGTATTTGAAAAGGATTTCCCATCGCTGGGATCTGAAGAAAAGCAGGGAGCATCAGAAATTGGAAGAGTTTCATCTCCTGGTTTGAGCTCGCCAGTTCAAAGCTTGCCTATTGGCAATTCAGCCTTAATTGTCGGTGGAGAGGGATGGACCTCTGCTCTTGCTGAGGTGCCCAGTATGATTGGAAACACCACAGGGTCATCGTCATTTCAACAAACTGTTCCTGCTACATCAGGGGCAGGGCCTCTGAGCATGACAGCTGGACTTAATATGGCTGAAGCGTTGGTGCAGGCTCCATCTCGAGCTCGTGCTGCTCCCCAGGTATCTGAGTTATCTGTCAAGACCCAGAGGCTTGAGGAGTTGGCTATTAAACAGTCCAGGCAATTAATACCAGTGACGCCTTCTATGCCAAAAGCTATGGTAATTGGAGCTAATGCAATTGTTGAATCTTTGTTGTTAGATCTTCTGCTACTTCCGTTGTTAAATAAACTCGGCTACTACATTTTAGGAACTGTATATTTCTTGTGGACGTTTGTTATTCAAGTGCTTAATTCTTCGGATAAATCAAAGCCCAAACTAGCATCAAGAACTGGAGAACTTAATGTAGCCATCAAGGGTGGACAGCCACCGCCCTTGTCAGTTCATGCCAACCAATCTCGTGGAGGACATGTCAAGTCCGATGCTCAAAAGATTTCTCATGGGAAGTTTCTTGTTTTGAAACCTGTACGAGAAAATGGTCTCTCCCTTGCAGCAAAGGATGTTTCAAGTCCGACTAGTAATGCAAACAGCATGGCAGCAAACAGCCAGTTCGCTCTTGCACCTTCAGTTCCACATGCTCCTTTGAGAAGCCCAAATAATACAAATGTTTCTTCTGTGGAGCGCAAAATTGCTAGCTTAGATCTCAAATCCGGAACAACTTTGGAAAAAAGACCGTCCTTATCTCAAGTCCAGAGCCGGAATGATTTCTTTAACCTCATTAAGAAGAAAACTTCACTGAGTTCTTCTGCTGTTCTCTCGGATTCATGCTCTTCTGTGAAATCTCCTTCAATTGGCCAATCTAGTGAACTAACAAGGGAAGAAATCGACATGCCTGCAAGTCCTCGTGTTATTGAAAATGGTACTGTGGAGAATAGAAATGGAGATAGTTCTGAAGAGGTTCGAGCATCTTGTGACAGTGGTGAAAAAACTGAGAGCCACGTTACTGCAGAATCTCTAGATGAAGAGGAGGCTGCTTTTCTTCGTTCTCTTGGCTGGGATGAAAACTGTGGTGAGGACGAAGGCCTTACTGAAGAAGAAATCAATTCTTTCTATCGGGAGTACATGAACTTGAAGCCATCTCTAAAAATGGGCCGATGCATTCAGCCAAAGATATTTGTGCCATCTGAATCTCATGAGGACAGCAAGGATGGAGGAGCCGGTTCTGAATTGAGCTCATCTGACTCGGAAGCCTGA

Protein sequence

MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRSAFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKILSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFEKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNTTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIKQSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA

Homology

[Close]

BLAST of Lsi09G009760 vs. ExPASy TrEMBL
Match: A0A5D3DT29 (Mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001070 PE=4 SV=1)

HSP 1 Score: 1045.8 bits (2703), Expect = 7.5e-302
Identity = 578/659 (87.71%), Postives = 595/659 (90.29%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
            GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQVSELSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQVSELSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP P SVHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSPSIGQS+ELT EE+ +P
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSPSIGQSNELTSEEMGIP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSKDDGAGSELSSSDSEA 616

[Close]

BLAST of Lsi09G009760 vs. ExPASy TrEMBL
Match: A0A1S3CDT9 (mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499274 PE=4 SV=1)

HSP 1 Score: 1045.8 bits (2703), Expect = 7.5e-302
Identity = 578/659 (87.71%), Postives = 595/659 (90.29%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
            GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQVSELSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQVSELSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP P SVHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSPSIGQS+ELT EE+ +P
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSPSIGQSNELTSEEMGIP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSKDDGAGSELSSSDSEA 616

[Close]

BLAST of Lsi09G009760 vs. ExPASy TrEMBL
Match: A0A1S3CC42 (mediator of RNA polymerase II transcription subunit 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499274 PE=4 SV=1)

HSP 1 Score: 1035.8 bits (2677), Expect = 7.8e-299
Identity = 575/659 (87.25%), Postives = 592/659 (89.83%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
            GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQ   LSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQ---LSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP P SVHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSPSIGQS+ELT EE+ +P
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSPSIGQSNELTSEEMGIP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSKDDGAGSELSSSDSEA 613

[Close]

BLAST of Lsi09G009760 vs. ExPASy TrEMBL
Match: A0A0A0KN63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387430 PE=4 SV=1)

HSP 1 Score: 1028.1 bits (2657), Expect = 1.6e-296
Identity = 572/659 (86.80%), Postives = 591/659 (89.68%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSV GG N NHHFPSSSSHSDVPSLSQSRNRISKTTGDFD+SRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVAGGGNPNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDSSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
           TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP PL VHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPLLVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNN NVSS+ERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNINVSSMERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFF LIKKKTS++SSAVLSDSCSSVKSPSIGQS+ELT EE+   
Sbjct: 481 TTLEKRPSLSQVQSRNDFFKLIKKKTSMNSSAVLSDSCSSVKSPSIGQSNELTSEEMG-T 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQVSRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREY+NLKPSLK+GRCIQPKIFVPSES  DSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYVNLKPSLKIGRCIQPKIFVPSESRVDSKDDGAGSELSSSDSEA 615

[Close]

BLAST of Lsi09G009760 vs. ExPASy TrEMBL
Match: A0A6J1FM76 (uncharacterized protein LOC111445235 OS=Cucurbita moschata OX=3662 GN=LOC111445235 PE=4 SV=1)

HSP 1 Score: 990.7 bits (2560), Expect = 2.9e-285
Identity = 554/660 (83.94%), Postives = 576/660 (87.27%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLR+TGSVTGG NSNHHF S S HSDVPS SQ RNR SKTTGDFDTSR 
Sbjct: 1   MERSEPTLVPEWLRNTGSVTGGGNSNHHFQSPSPHSDVPSQSQPRNRTSKTTGDFDTSRP 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           AFLDRT+SSNSRRSSSNGS+KHAYSSFNRGHRDKDREKEKDR NFGDNWDRDSHDPLGK+
Sbjct: 61  AFLDRTASSNSRRSSSNGSAKHAYSSFNRGHRDKDREKEKDRFNFGDNWDRDSHDPLGKL 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSH-NNSNGILSGTSVGSSIQKAVF 180
           L NR+DKDALRRSHSMVSRKQ   ELFHRR AT+LK+  N+SNG+  G SVGSSIQKAVF
Sbjct: 121 LPNRVDKDALRRSHSMVSRKQD--ELFHRRVATDLKAGVNSSNGMPPGISVGSSIQKAVF 180

Query: 181 EKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGN 240
           EKDFPSLGSEEKQGASEIGRVSSPGLSS VQSLPIGNSALIVGGEGWTSALAEVPSMIG+
Sbjct: 181 EKDFPSLGSEEKQGASEIGRVSSPGLSSSVQSLPIGNSALIVGGEGWTSALAEVPSMIGS 240

Query: 241 TTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAI 300
           TTGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARAAPQ SELSVKTQRLEELAI
Sbjct: 241 TTGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARAAPQASELSVKTQRLEELAI 300

Query: 301 KQSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVL 360
           KQSRQLIPVTPSMPKA                                           L
Sbjct: 301 KQSRQLIPVTPSMPKA-----------------------------------------SAL 360

Query: 361 NSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVR 420
           NSSDKSKPKLASRTGELNV +KGGQP P SVHANQSRGGHVKSDAQK SHGKFLVLKP R
Sbjct: 361 NSSDKSKPKLASRTGELNVTVKGGQPLPSSVHANQSRGGHVKSDAQKSSHGKFLVLKPAR 420

Query: 421 ENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKS 480
           ENG+S  AKDVSSPTSN     ANSQFALAPSVPHAPLRSPNN+NV+SVERK+ASLDLKS
Sbjct: 421 ENGVSPTAKDVSSPTSN-----ANSQFALAPSVPHAPLRSPNNSNVASVERKMASLDLKS 480

Query: 481 GTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDM 540
           GTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSPSIGQS+ELTREEID 
Sbjct: 481 GTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSPSIGQSNELTREEIDT 540

Query: 541 PASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCG 600
           PASP V+ENG VEN NGDSSEEVR+SCDSGEKTE+HV AESLDEEEAAFLRSLGWDENCG
Sbjct: 541 PASPHVLENGVVENTNGDSSEEVRSSCDSGEKTETHVAAESLDEEEAAFLRSLGWDENCG 600

Query: 601 EDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           EDEGLTEEEINSFYREYM+LKPSLKMGR IQPKI VPSESHEDSKD GAGSELSSSDSEA
Sbjct: 601 EDEGLTEEEINSFYREYMSLKPSLKMGRSIQPKISVPSESHEDSKD-GAGSELSSSDSEA 611

[Close]

BLAST of Lsi09G009760 vs. NCBI nr
Match: XP_038907227.1 (mediator of RNA polymerase II transcription subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 1049.3 bits (2712), Expect = 1.4e-302
Identity = 583/659 (88.47%), Postives = 595/659 (90.29%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGD+WDRDS DPLGKI
Sbjct: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDSWDRDSPDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSN+IDKDALRRSHSMVSRK GERELFHRR ATELK+HNNSNGILSGTSV SSIQKAVFE
Sbjct: 121 LSNKIDKDALRRSHSMVSRKLGERELFHRRAATELKNHNNSNGILSGTSVSSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
           TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARA PQVSELSVKTQRLEELAIK
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARATPQVSELSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSM KAM                                         VLN
Sbjct: 301 QSRQLIPVTPSMTKAM-----------------------------------------VLN 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
            SDKSKPKLASRTGELNV IKGGQ  PLSVHANQSRGG VKSDAQK +HGKFLVLKPVRE
Sbjct: 361 PSDKSKPKLASRTGELNVTIKGGQQQPLSVHANQSRGGLVKSDAQKSAHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMA NSQFALA +V HAPLRSPNNTNVSSVERKIASLDLKSG
Sbjct: 421 NGISLAAKDVSSPTSNANSMAVNSQFALASAVAHAPLRSPNNTNVSSVERKIASLDLKSG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+ SSAVLSDSCSSVKSPSI  S+ELTREE DMP
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSM-SSAVLSDSCSSVKSPSISHSNELTREETDMP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNGD SEEVRASCD+GEKTESHV AESLDEEEAAFLRSLGWDENCGE
Sbjct: 541 ASPRVIENGAVENRNGDGSEEVRASCDTGEKTESHVAAESLDEEEAAFLRSLGWDENCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLKMGRCI+PKIFVPSESHEDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIKPKIFVPSESHEDSKD-GAGSELSSSDSEA 616

[Close]

BLAST of Lsi09G009760 vs. NCBI nr
Match: XP_008460469.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis melo] >KAA0067384.1 mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis melo var. makuwa] >TYK26525.1 mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1045.8 bits (2703), Expect = 1.6e-301
Identity = 578/659 (87.71%), Postives = 595/659 (90.29%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
            GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQVSELSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQVSELSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP P SVHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSPSIGQS+ELT EE+ +P
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSPSIGQSNELTSEEMGIP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSKDDGAGSELSSSDSEA 616

[Close]

BLAST of Lsi09G009760 vs. NCBI nr
Match: XP_038907228.1 (mediator of RNA polymerase II transcription subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 1038.9 bits (2685), Expect = 1.9e-299
Identity = 580/659 (88.01%), Postives = 592/659 (89.83%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGD+WDRDS DPLGKI
Sbjct: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDSWDRDSPDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSN+IDKDALRRSHSMVSRK GERELFHRR ATELK+HNNSNGILSGTSV SSIQKAVFE
Sbjct: 121 LSNKIDKDALRRSHSMVSRKLGERELFHRRAATELKNHNNSNGILSGTSVSSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
           TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARA PQ   LSVKTQRLEELAIK
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARATPQ---LSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSM KAM                                         VLN
Sbjct: 301 QSRQLIPVTPSMTKAM-----------------------------------------VLN 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
            SDKSKPKLASRTGELNV IKGGQ  PLSVHANQSRGG VKSDAQK +HGKFLVLKPVRE
Sbjct: 361 PSDKSKPKLASRTGELNVTIKGGQQQPLSVHANQSRGGLVKSDAQKSAHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMA NSQFALA +V HAPLRSPNNTNVSSVERKIASLDLKSG
Sbjct: 421 NGISLAAKDVSSPTSNANSMAVNSQFALASAVAHAPLRSPNNTNVSSVERKIASLDLKSG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+ SSAVLSDSCSSVKSPSI  S+ELTREE DMP
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSM-SSAVLSDSCSSVKSPSISHSNELTREETDMP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNGD SEEVRASCD+GEKTESHV AESLDEEEAAFLRSLGWDENCGE
Sbjct: 541 ASPRVIENGAVENRNGDGSEEVRASCDTGEKTESHVAAESLDEEEAAFLRSLGWDENCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLKMGRCI+PKIFVPSESHEDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIKPKIFVPSESHEDSKD-GAGSELSSSDSEA 613

[Close]

BLAST of Lsi09G009760 vs. NCBI nr
Match: XP_008460470.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 1035.8 bits (2677), Expect = 1.6e-298
Identity = 575/659 (87.25%), Postives = 592/659 (89.83%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
            GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQ   LSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQ---LSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP P SVHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSPSIGQS+ELT EE+ +P
Sbjct: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSPSIGQSNELTSEEMGIP 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSKDDGAGSELSSSDSEA 613

[Close]

BLAST of Lsi09G009760 vs. NCBI nr
Match: XP_004140377.1 (mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 1028.1 bits (2657), Expect = 3.4e-296
Identity = 572/659 (86.80%), Postives = 591/659 (89.68%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           MERSEPTLVPEWLRSTGSV GG N NHHFPSSSSHSDVPSLSQSRNRISKTTGDFD+SRS
Sbjct: 1   MERSEPTLVPEWLRSTGSVAGGGNPNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDSSRS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
           +FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61  SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120

Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSNGILSGTSVGSSIQKAVFE 180
           LSNRIDKDALRRSHSMVSRKQG  ELFHRR  TELKSHN+SNGILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180

Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
           KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240

Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
           TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300

Query: 301 QSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTFVIQVLN 360
           QSRQLIPVTPSMPKAM                                         VL+
Sbjct: 301 QSRQLIPVTPSMPKAM-----------------------------------------VLS 360

Query: 361 SSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDAQKISHGKFLVLKPVRE 420
           SSDKSKPKLASRTGELN  IKGGQP PL VHANQSR GHVK DAQK SHGKFLVLKPVRE
Sbjct: 361 SSDKSKPKLASRTGELNATIKGGQPQPLLVHANQSRVGHVKPDAQKSSHGKFLVLKPVRE 420

Query: 421 NGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTNVSSVERKIASLDLKSG 480
           NG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNN NVSS+ERKIASLDLK+G
Sbjct: 421 NGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNINVSSMERKIASLDLKTG 480

Query: 481 TTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQSSELTREEIDMP 540
           TTLEKRPSLSQVQSRNDFF LIKKKTS++SSAVLSDSCSSVKSPSIGQS+ELT EE+   
Sbjct: 481 TTLEKRPSLSQVQSRNDFFKLIKKKTSMNSSAVLSDSCSSVKSPSIGQSNELTSEEMG-T 540

Query: 541 ASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFLRSLGWDENCGE 600
           ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEEEAAFLRSLGWDE+CGE
Sbjct: 541 ASPRVIENGAVENRNGNSSEEVQVSRDSGEKTESHVAAESLDEEEAAFLRSLGWDESCGE 600

Query: 601 DEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSKDGGAGSELSSSDSEA 660
           DEGLTEEEINSFYREY+NLKPSLK+GRCIQPKIFVPSES  DSKD GAGSELSSSDSEA
Sbjct: 601 DEGLTEEEINSFYREYVNLKPSLKIGRCIQPKIFVPSESRVDSKDDGAGSELSSSDSEA 615

[Close]

BLAST of Lsi09G009760 vs. TAIR 10
Match: AT1G36990.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). )

HSP 1 Score: 392.1 bits (1006), Expect = 8.7e-109
Identity = 296/632 (46.84%), Postives = 370/632 (58.54%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLS-QSRNRISKTTGDFDTSR 60
           M++ E +L PEWLRS+G  +GG +SNH   SSSSHSD  SL   SRNR S++  D D+  
Sbjct: 1   MDKGEHSLAPEWLRSSGHASGGGSSNHLLVSSSSHSDSASLQYNSRNRNSRSKSDVDSIH 60

Query: 61  SAFLDRTSSSNSRRSSSNGSSKHAYSS--FNRGHRDKDREKEKDRLNFGDNWDRDSHDPL 120
           S FLDR+SS+NSRR SSNGS+KHAYSS  FNR  RDKDR ++KDR+++ D WD D+  PL
Sbjct: 61  SPFLDRSSSTNSRRGSSNGSAKHAYSSFNFNRSQRDKDRSRDKDRVSYVDPWDLDTSIPL 120

Query: 121 GKILSNRIDKDALRRSHSMVSRKQGE---RELFHRRGATELKSHNNSNGILSGTSVGSSI 180
             IL+ R D D LRRSHSMV+RKQGE   R L          +  N NG+LSG S+G+S 
Sbjct: 121 RTILTGR-DPDPLRRSHSMVTRKQGEHLSRGLTVGLNNGGSSNSYNGNGLLSGPSIGNSF 180

Query: 181 QKAVFEKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVP 240
           Q+  F+KDFPSLG+EEKQ   ++ RVSSPG+SS VQ+LP+GNSALI GGEGWTSALAEVP
Sbjct: 181 QRTGFDKDFPSLGAEEKQNGQDVVRVSSPGISSVVQNLPVGNSALI-GGEGWTSALAEVP 240

Query: 241 SMIGNTTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQRL 300
           ++I      S       A S AG L+  +GLNMAEALVQAP+R    PQ    SVKTQRL
Sbjct: 241 NVIEKACTGSLTSPKANAVS-AGTLTGPSGLNMAEALVQAPARTHTPPQG---SVKTQRL 300

Query: 301 EELAIKQSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWTF 360
           E+LAIKQSRQLIPV PS PK +                                      
Sbjct: 301 EDLAIKQSRQLIPVVPSAPKGL-------------------------------------- 360

Query: 361 VIQVLNSSDKSKPKLASRTGELNVAIKGG---QPPPLSVHANQSRGGHVKSDAQKISHGK 420
               LNSSDKSK K   RTGE  +A       QP  L      +  G +K +       K
Sbjct: 361 ---SLNSSDKSKTKQVVRTGETCLAPSRNALQQPAVLLGSFQSNPSGQIKPEK------K 420

Query: 421 FLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQ-FALAPSVPHAPLRSPNNTNVSSVER 480
            LVLKP RENG+S A K+  SP++N N+ AA+SQ  +   S   AP+RS N    S  E 
Sbjct: 421 LLVLKPARENGVS-AVKESGSPSANTNTRAASSQLMSNTQSTQSAPVRSTN----SPKEL 480

Query: 481 KIAS-LDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQS 540
           K AS   + SG T+EK+PS +Q QSR+ F++ +K+K + S+S + +D  SS  S S    
Sbjct: 481 KGASAFSMISGQTIEKKPSAAQAQSRSAFYSALKQKQTASTS-ITTDPVSSSTSASSSVE 540

Query: 541 SELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFL 600
            +L   +  + + P         +    S  EV  S      T      ++ DEEEA FL
Sbjct: 541 VKLNSSKDLIASDP--------SSSQATSGVEVTDSVQVASHTSGFEATDTPDEEEAQFL 564

Query: 601 RSLGWDENCGEDEGLTEEEINSFYREYMNLKP 622
           RSLGW EN GE E LTEEEI+SF  +Y  L+P
Sbjct: 601 RSLGWVENNGE-EYLTEEEIDSFLEQYKELRP 564

[Close]

BLAST of Lsi09G009760 vs. TAIR 10
Match: AT4G08510.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36990.1); Has 888 Blast hits to 321 proteins in 121 species: Archae - 0; Bacteria - 120; Metazoa - 86; Fungi - 24; Plants - 79; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink). )

HSP 1 Score: 289.7 bits (740), Expect = 6.1e-78
Identity = 248/634 (39.12%), Postives = 336/634 (53.00%), Query Frame = 0


Query: 1   MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
           ME+ EP+LVPEWLRS+G  +G  +SN       S SD  SL  S+NR +++  D D+  S
Sbjct: 1   MEKREPSLVPEWLRSSGHGSGVGSSN-------SLSD--SLRNSKNRNARSRSDADSVGS 60

Query: 61  AFLDRTSSSNSRRSSSNGSSKHAYSS--FNRGHRDKDREKEKDRLNFGDNWDRDSHDPLG 120
            FLDR+SS+N+RR SSNGS+KHAYSS  FNR +RDKDR +EKDR+++ D WD DS  P G
Sbjct: 61  PFLDRSSSTNTRRGSSNGSTKHAYSSFNFNRSNRDKDRSREKDRMSYMDPWDNDSSMPFG 120

Query: 121 KILSNRIDKDALRRSHSMVSRKQGER-----ELFHRRGATELKSHNNSNGILSGTSVGSS 180
             L  R  ++ LRRSHSM +RKQG        + ++ G     +  N +GIL GTS   S
Sbjct: 121 TFLIGR-GEEPLRRSHSMTTRKQGNHLAQGFTVGYKNGGN--INTFNGHGILPGTSPVKS 180

Query: 181 IQKAVFEKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEV 240
            ++  F KDFP L  EE+ G  ++ R+SSPG S   QSL + N ALI+ GEGWTSALAEV
Sbjct: 181 SKRMGFNKDFPLLRGEERNGGPDVVRISSPGRSPTAQSLSVANPALII-GEGWTSALAEV 240

Query: 241 PSMIGNTTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQVSELSVKTQR 300
           P++I  + G+ S      + + +GP    A  NMAEALVQAP R    PQ        Q 
Sbjct: 241 PNVIEKSGGAESHANVGNSATLSGP----ACRNMAEALVQAPGRTGTPPQ-------AQT 300

Query: 301 LEELAIKQSRQLIPVTPSMPKAMVIGANAIVESLLLDLLLLPLLNKLGYYILGTVYFLWT 360
           LE+ AI+QSRQLIPV PS PK                               G+V+    
Sbjct: 301 LEDRAIRQSRQLIPVVPSAPK-------------------------------GSVH---- 360

Query: 361 FVIQVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSV---HANQSRGGHVKSDAQKISHG 420
                 NSSDKSK K   R+GE  +A         SV   +   + G  +K D  K    
Sbjct: 361 ------NSSDKSKTKPMFRSGETGLASSRNTQQQSSVMLGNMQSNPGSQIKPDTTK---- 420

Query: 421 KFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPH-APLRSPNNTNVSSVE 480
           K ++LKP RENG       V +  S  NS  A SQ   APS    A +RS N       +
Sbjct: 421 KLVILKPARENG-------VVAGGSPPNSRVAASQPTTAPSTQFTASVRSTNGPR----D 480

Query: 481 RKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSPSIGQS 540
            + AS+++ +G   EK+ SL+Q QSR+ F++ +K+KT  + S   S + S + S    Q+
Sbjct: 481 LRGASVNMLAGKAAEKKLSLAQTQSRHAFYSALKQKTCTNISTDPSKTSSCILSSVEEQA 540

Query: 541 SELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEEEAAFL 600
           +         P+SP+  E   +        E V    +  E+     +A   D +EAAFL
Sbjct: 541 NSSKELVASDPSSPQAAERDEI-------MESVEKVSNVAERISRFESAVRPDPKEAAFL 544

Query: 601 RSLGWDENCGEDEGLTEEEINSFYREYMNLKPSL 624
           +SLGWDEN  ++   T EE+  + +++   KPSL
Sbjct: 601 KSLGWDENDSDEYTHTMEEMREWCKKF---KPSL 544

The following BLAST results are available for this feature:

BLAST of Lsi09G009760 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G009760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DT29	7.5e-302	87.71	Mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo...	[more]
A0A1S3CDT9	7.5e-302	87.71	mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo...	[more]
A0A1S3CC42	7.8e-299	87.25	mediator of RNA polymerase II transcription subunit 1 isoform X2 OS=Cucumis melo...	[more]
A0A0A0KN63	1.6e-296	86.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387430 PE=4 SV=1	[more]
A0A6J1FM76	2.9e-285	83.94	uncharacterized protein LOC111445235 OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]

BLAST of Lsi09G009760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907227.1	1.4e-302	88.47	mediator of RNA polymerase II transcription subunit 1 isoform X1 [Benincasa hisp...	[more]
XP_008460469.1	1.6e-301	87.71	PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cuc...	[more]
XP_038907228.1	1.9e-299	88.01	mediator of RNA polymerase II transcription subunit 1 isoform X2 [Benincasa hisp...	[more]
XP_008460470.1	1.6e-298	87.25	PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Cuc...	[more]
XP_004140377.1	3.4e-296	86.80	mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis sativu...	[more]

BLAST of Lsi09G009760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36990.1	8.7e-109	46.84	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXP...	[more]
AT4G08510.1	6.1e-78	39.12	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 549..581
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 554..581
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 635..659
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..115
None	No IPR available	PANTHER	PTHR34112	C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN	coord: 1..658

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G009760.1	Lsi09G009760.1	mRNA