Lsi09G009740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G009740
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontransmembrane protein 50A
Locationchr09: 12972158 .. 12984924 (+)
RNA-Seq ExpressionLsi09G009740
SyntenyLsi09G009740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTAATCCAAAAAAAATAAAAAAAAAAATAAATTTGTCCAACATTCGGCAAAGATATATTTCCCCGAATATCAGAGCTTCAAGGGAAGGTAGATGGGAGTTTTAATATTGGGCAGCAAAAGGGTGGTGAGCCTGTGAGGTTTGCGATCATTCAGTTCACATCACACTAGCCTCTCCAAATCGATCCGCTTCGAACTACTTGCGTAAGGAGAAGGCAAAAAGAAAGAACCCCCGAATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTTTTTTATTCATTTGCGAGTCCACGCCATGTATAATTTGCGCTTAGGGTTTTTGACGGTGCTCCGGTATTGGGGTTGCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGAGAAGTTTGTGCTTTATCTACTTACCTCTCTCTCTTTCTCTCTCTTTTCGTTGCTTTCTGCATTTTCTTTTGTTTAAATCTGTCACTCATCATGTCGCGACCCTCTTTGCCTAATCATTCGTCTCGATTGAAAGCAACATCACAGTGTTCTTCTTCAACAAGGTTATGTGGAATGTGATTTAGCACCTGCTAGGATTATTCTCCCTGAATGTGTTAGGATCTTATGAACTCCTAGCTTACATCTGGGTCTTAATTCTTAATTTACAAGTTAGAATATGGATTGCACTTCGATTCAAACTTCGCGCGTTAGCAATGGAAGTTGTGTGCTAACTCTGGGGCTTGGTGGGAGCACTCATCAGGAACTTGAAATCAGTGCAACCAAATGATTGAATTCTTTGTTACTCGTCCATTACAAGTTTAGATAAGATGAAAATTCAAACAGGTAACCCAAGTTAAACTTTGTGTCAATGGCCGTGTTTGATGGATGTAAGAGCAATTTGGAGATGCAATTTCTTCTCCAAGACTTCTACACATTTTTTTTGGTCTTGCGAGCCCCATTCATACTGTACTGATTATCAATTGGACATCACATTAGTCAATTCTTTTATACCCTTTTTCAACCATCGCTCCAATTAAGTGGGTTGCGAAGAGAAGGAACCAAGGGACAAGAGTGAGGTTGTTTAGGGTGTATGTAACTACGTGTCTAGTGAGGGGAGAGTTGAAAGAAGACAGAGCGTTCACATGCAAATGAAAACACAGAACGTAACTTCTTGATAGAATGGTCCAAGTGATGTAAACATTAGCAGAGGTCTAACAGCCATCAAAAGTGGTGTGTTAGAGGTTTTGATGCTGAAGAGTGAAGGTATACGAGTCACTATTCATCTTTCTTTTGTCTGGAAATAAAAATTTCATTATTCTGGAAATCTCTTTTTTAGTATACATCATTCCTCTCAAACATCATATATTATAGGTTTGCTATCTGGGGATTAAAATGCGTTCGATGAGACAAGAGACCAAAAGGAGTTGTATTAAAACAATCTCTAGGAATTGGGGGGTTGTGGAAGACGAAGGTTCACTCACTAAACTACAAAAGGAGTTCTTTCCATTGGACTATAATAATGAAAATTCTAGAATTATAAAATATTTTTTTTGTGGTTTGATCACTGCCAAGAGGTGGTAATAGTAGGATGCTGTATACTATATTACAAAAGTTGTCTTTCAAATCCGACTTATCTTGAAAGGAAAATCCTTGACTTATCTCTCTCCATATAAGGCAAAGAAGTGGTTAACTGCACAGAATCTTTTCCTTGCCTATAAAAGCCATGCCCACAAGCATTTTCGTCAACCATAGGTCCTCCAGTTTAGGGAGACAAACTGATGACACGAATTCTAGCAAAAGAAAAGACCCGTCGATAAAAGCAAAAGGAACGAGGAAGATATGAGATTCCTTGTTCCTCTTGCAAAGACAATAAACTGAGGAGGACAAAGCCCAAAGTGGGAACTTCTGTAATGTGTATGCAGTATTGAGATTGAAACTTCTATAGAAGAGAGACTAAAGATAAACATTCATTTCCATATGGATCTTGAAATTCCTAAAATAATTTGCAAAAGGGGCTTTAAAATTATCAGGCGGTTTGGTAAGGTAAGATGCATTGAAGACCACTTCGTCACTCCTTGAGTAGTTGTGATACTTGTTTGAGAATAAAATTAGCAATGACTTGAAAGCTGAGATTTAGCTTCTAGGAACTTCCTTAACACACTCTTAAAAATGGAGTTCTTAAAGTGGTAATTGTAGAAATCAAATCTATATTGAAGGCCTATTGATCAATGGATGTGCTACCAAACTTGTCCGAGAATTAACCAATGAATGGTGACATAATTATGCTCATCCTGATTGACCAGTTAAGAAATATCAAAATAGAGCAAGGTTTACATTCAAATTGCAGCTTGGTCTATATGGTTTACCAGCCATGAAAAGTTAGCTGCCATAACAAAGTATTTATTATTATTATTATTGTTATTATTATTATTTTAAAATAAAAATAAAAAGGAACATGGCTTTCATTATCAAAGAGAAAGATACAAAAACTTACAAAGAAAGGAGTCCAACTAGTATAAATTTGGGTTAGGCTATAATTACAAAAGAATTTAGAAGTAGAGGACTAAGTGGGAGCAAAAAAGTAACCAAATTCCAAAACAGGTCACTGTTAATTTCTTGATCACGAAAGATTCTAGAGTTTCTTTCAAACCACAACCTCTAAAGGAGGGCAAAGATCTCATTGGACCAAAGGATTTTTGCTTGAGCATTTAACTAAAGACGTTTCAACTAATTGTAGAGGGCATCTGAGTCTTTCTTGGGCCAACATCCTTGCATTTTGAACAAGGTAAAAAGTCTCCCCCAACAATCAACAACAAAGGGACAAAAGGAAAAAAGGCGCATCAAAGATTACTTTTTTTTTTTTTTCCTTCCAAAAATCAGACTAATTAGGAGAGAGTGCACAATTTCAAAGGACTCTTTGGATTCCACAATGGGTGTTTAGCCTTTCAAAAGAGAAGGTTCACAAGAAAACTTTGACTTTCTTAGGACAAAGTCTTCCAAATATGATTAGTTTTTGCCTTTCCAAAGCTATTTGTTTCACAATGAGCTTGGGAGAGAGATTTAACTAAAAAGGAGCCACCATTCTCCAGCAACCACACAAGCACGCCATCCTTGTTATTCAGTCTAAAGAGTTGGAACTTGTTCAAAAGAGCAATCCAATCATCAAATTAGCATCAGTGAAATTTCTTGTGAACTTTCCCACGCATGAGGAGAACCAAACCAGCAGTGACAAACCAAAGAACCCTTGGCAATCTGAAGTCTAGTATGAAAAGCCTAGGAAATTCCAAACAAAGAGGCGAGTTAACCAACCATTTGTCCTTTTAAAATTGGGCTTTATATTAGGATCGACTCTAACTCTATACCATTCCTATGAAGTGAGGATATTTTTGATGATTTGGGGCCAAAGGCCTTTAAACAAACGAGATCCTTTCATAGAAGGTCACTAATGAGTCTCATTCCCATTGTATTTATAAGCATTCACCAACTTTTAGTGGCAAAGTCACCGATGCCAACCCTCCCATATTAGTTGGAAGAGGAGTAGTCTCCCACCTAACAAGATTGACAACACCAAGCTTCATGTTACCTTTCCAAAAGAAATTTCTAACCAACTTCTCCAACGTATTGAGCACACGAGTAGGACAAGAGAAAATTGAGAAATAGTATAAGGGAATGCTCACAATAACCAATTTAGCCAACACAATGTTAGGTTTCTCTTCACTTGCAACCGTAAACCCAACAAGCAAACAATTTCGAGAAAACTGGGCAAACTACCCAGAGCTTATATATTTACTTCCATAGAAATATCCAAGGTAGTTGAAATGATTACAAGGGAAAGAAGATAAAGCTACAATATGAAAGATAACCATGAGCATAAGAAAAACCACAGCACATTTGAGGAAGTTGAGCAATCCTCTCCAAGAAAGCTTCAATGGTTTCACCATATTCTTCTCACCCTTCTTGGCCTTCCAAAAACCCCACTAAACCCCTTACATAACCTTCTCCTCAGGAACGTGGTCCCCACTCAATCAAACCAAACAAGCACATCCCCACTAACTACTTGTTCTAGTTGCTCTTTTTACCCTTCCTCTCATTAAGTGTAAATTATTGGGGGTCTCACACGTAACTCTGCCCCCTCTAGAGAGAATAAGACTCTTCCATCGATCCAACTTCCTCTCGATTTTGTCAATTATAGTTTGCCAAAAGGTAAGCTTCTTAGGGCCTGTTTGGTTGAAGGTCTGTCATTTGTGGAGGGGGGAATGGGCTTGGGCATTTGTAGCCCATGTTTGATTGAAGAGTTTGTTTATTTACGTGGGAAATCGTTTTTCCCAGACATCATTTATATCCTTGAAACAAGGTTTTGTTTAGGCGTTCAAACGGTGGGATATCTGACGAGTTTGCTGTGACTTTTCAATTTGTTGGGGATTTTTATGGGTTGTATTTAAAAAATATATTATACTATTAATTTATGGGCTTGATATCATTTTTCTTTGATTATTTTAATTTTTGGTTGATGTTGGTCAGTTGAGAACAAATTTTAAAAATCTTCTGTTATTTTTAATTTATGGTTTTGATTTCTTTTTTTGTCGGGAGATTTGGGTCAGTTGAGAATAAATTTGGAAAAAAAAATCTTATGATACTTGATTTTCTTTTGATTTTGGGAGATTTGGGTTGGTTTAGAATGGATTATAGATGGGTTGGATTATAATGGGTATGGGTAATTTGATTTTAAAAGAAAACATGGACTGTATATACTTCAAAAATCCTTCCCCATTTGCCTCACCAAAATCCCTAAATCCTCAAACCCCTTTCCATTTTTGTATGTCACCGCATTGACTAAAATCATGGCATGGTAGGTGTAAGTTTTTTTGGCCAAGAAAAAATGGAAAGTTAGCCAAATGGGGGTTGATGGAATATAACACATGCACAACGGAAGCAAGGATCTATATACACTCTATAATGCATGAACAATAGGAAAAGCATGCTGGAAATTCAAGAGAGAAACATAAAGCTTATCCTTGTAGACTTTTGATCTTCTCTTCTTCTCCAAAAAAGTGGATGCTCCTCAAGCCCGAACCTTCTTGGGACTACCACCGGTGTTACCTTGCTATTCTCCAGCTAAGAACACGGTAGTGGGACCGATTTTAGTGAAGGAATAAGGGAGGAGTAAGTAATTTGGAGAGTTCGAACAAGTTAAAGACTTAGTGAAATTGTCTAGGAAATTCCACTAAATCACCAACCCTTGTATCATCTTCAACAACTTATTTTATAGAAGATTGACATGCAAAGAGGTGTTTTGCATGTAGGACACTCCAACAAGCACTAGCATGAAATAGGTTAGGTGTCATGATATGAAGAAGCCAACACAAACTCATCCAAGTTAGTGGAAAGTTCCAACTTTTAAGTTGGAATTTTCCACTAAATGGATTTTTCTTTTAAAAACTTGTTTTAATTAAAACTTAATTAATCAATCTGATTTAATATCTAATATTAAATAAAAGACACCAATTCATTTTAACAACCAATCTTATTGATTGTGCTTGAATCAATATTCAAGAAAAAAATATTTAAATTCAATTTAAATATTTGTAACTCTCCAATTTTATTTAATTCTCAATTAAATAAACAAACGTCAATTATATCGCATATAATTGACGTTTTTCCCTAAATCGAATTTAAACGTTTTAAATTCATTCTTCACATAGTTCTTTGGTTTTATCCGATTGAGCTAGCAAGGGACCCAATGGACCTACAGATCATGGGCTCCAACGATCTGAGATTAACTGGTCAAACTCTTTAACCTAGTTAACCAATATTCGTTAACTAACAAGTCTGTCCATTATAGCCTGTAGCTATACTCCCCTCACTGTAGATATATTTCTGTCCACCCGATATAAGCGTCATTAGTAAGTCAATCCTTCACAGATTGTTCGTAATCTCAGCTGGGTCAATTACCGTTTTACCCCCGAGTTACTTCTTTTCTCCTTAAGTACCACTGTCCTTCTAATGAACAATTGATTTGAGATCTAATCACCAAATCGAGTCCCTATCGGGTCAGTGAGAGGGTGGGGCCCCTTGTTCAAGACCCGAGATCAACACTTAAGAGAACAATCTCTCTACTATCCCTAAAAGCGGGTAGGAGTGAATTTCATCTTGCAAGTCTATGTCTCCAGCTATCTACCTAGTCTTACCTCTGAAATGGGAGGCTTATTGAGTCGGCGAAGTCATGCCACTTTCACCCATGCAGATTTGAGGATAATCCCGAATAGACAAGAGCCCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGATTTGAAATTAGTTAGTGTTTGACAGTAAACGGCGTTATAAAGAAACGGTCACTATTTCGTGGTCCGGTCTTGTGCAAACTCATTGCACAGAACACCCCCACTCACATGTCTCCACATGAACGTTTCAGGATCATATCGTTTGTGTCAAATACAAAGTGGGCCGTATTCAATAGTGTCCCCAGGATAAGGCACTCAACCTAATCCTTATACCATAGACCGATGACTATCTACTCGAACTTGATCCATTTTTATATCTCTACATAAAGTTCAAGTACTCATACAATAGCCATGAGTTCTTAGTTTATTGGATTTAGGGTTACATTCACATATTCAATAACAGCTTTACCGAATAAGTTCGATAACTACTTTATTAATAATAGGATAACTACTTTATTAATAATAGAAAGTGTTAAAAGTTTAAAAACCACGAGTTTTAGGACATAAAACCCAACAACTTATCATGGAAAAAGGAAGTCGGCAAACTTGAACAAAGAGGCAAACCAACTTGGGTCCTTCCATATCTTCAATGTATGACATGACCGAATTGGTATTAACAGAATAGCTGAGAGAGACATATAGAAAGGCAAATTGATTGAGAAGGGGGGGGGGGGGGGGGGGGGGGGGTAAAATGCATTCCTTTAAGTCAAAAAGAAAAATCTTCATCATTATACTATTAATGACAATAAGTTGCTTTAAGTCTCTATTGTAGGAAGAAAGAAAACGAAAAAAGAGAACAAAATTAAAGATATTGCTCTAACCTTCGCATTCGGCCAAAATAACGAGCACGCTCGGTTACTCCAATGAAGCCTCTTGAGTCCAATATGTTGAAAGCATGAGATGCCTTTAAAACCTGATCATATCTATTATGTTGTATGCCATTTGCTAGTCAAAAAATAGTTATACAAATAATACTACTTTAAAAGAATAAAAAAAAAAAAATTGAGCATCAGTATACAATTAACGGAACAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTGGAGTTAAAAGGTAAAGGCCAAGTCCAGAGTGTTGTTTGTTGGTTTTGGGAGTTCGATAGTAATCAGCTTGGAAATAAAAAATAATAGTAAGCAAGAAGTGGAGGTTGAGTAAATCTAATTGCTTAAAATTGTTATAATAAAAATAGATTAACTAACAAAAATAAATTATTTAAAACTGATTATTGAAGTTAATTTTGATTAATTCTATACTTTATAATTGCATAAGAATGTTAAATACATTTCTTTTTAATTTTTAGGCAATTTATTTCAAACATCCTTAATTCTGATTCTCATGCATAACCAAACATAGTTATCTTTGATTCTCTAGCAATCTATTCCTAGGTATTATTAATATCCAAATATCTATAAAATCTTAAACCAAATGTGCCCATAGGGTTGCCACCAAGGGGCATCACTAGGTACTCAAGAGGTCAGACGCTAGCAACACAACCCCACTCTTGTGCCATTGATGAAACCTCACTACTACATATATTTATACCAACCAATAGACATTTCGAGAGATTAATTTTTAAGCTTGACAACACCACAAAACCAACAATCCTGTTTTCCATATTCTCAAGCATAGGAAAATCATGGTCAGAGAAAAGTAAGGTGTCATCAGCAAATTGCAAATGTGATATATGAACCCCTCCACCTCTGAGAGACAAACCTGCTGAAAAATATTGTTGTTTTCTCTCTTATTGAATATGTGCAATTTAGGTCTTCTTATATAGGAGAAAGACCTTTTACAAATATGGAAAGAATAAAAAAGCAATAAAGGATAAATATTTAGAAAATAATATTTATATACACATATAGAAATTCCAACAAAACCCTTCAAAAAACTATCCATTGCACTCTTATCAATCAACGTACTAAGAACATCAGCCACAAGAACAAATTGAAAAGGAGCAATCAGATCATCTTGCCTTAGCCCCCTAGAAGCTTTGATTTTGGCCTGTGGTCCACCATTAATCAAAATAGAGAAAGATGTATCGGTGATGCTAGCCTTGATCCAACCAATACACCGAGCTACAAACCCTTTATGGTGAAGCACCTCAAAGAGAGAATCCCGATCCATGTCATAGGTCTTCTCAAAATCAAGCTTGAACAACCATCCTTCCTTCTTGCTAACAAACAAAGTCATCAATAAGCTCATTAGCACAATTGGGTCAAGAATTTGCCTACCCAAGATAAAAGCTGATTGGTTGCAACTGATAGTTTGATGAAACACTTTTAAGAGTCTCTTGGCAAGTATTTTTGCAATAAGCTTATACAGAATATTGATCAAACTGATAGGCCTAAAGTCCATTACTTTAGAGACACGAGCTCTCTTAAGAACAAGACAAATGTAGGTTTTGTTCATGCAACATTTCGAAATGCTACTTTCGAAAAAGTCATGGAACACCTTAAGAATACCGCCTTAATTAAACAATGTTCCAAACCTTTTTCAGAAATTCTCCATCCTGACCAGGAGCTCTATTGGAGCTTTTTGATCTCTTTCTCAGAAAATGATTCTTCCAACATTGCCTTGCTAGGAATACCAATGGGTTGCCACTCAATGTTTGGGGAATAACATGGTTGCCATCAGCCTTTGTATGGAAATTTGTAAAGAAAGACACAAACTCATTTACAATCAAATCCTCATCGAAAATACTTTCTCCTACATCCTTTTGGATTTTTTTGATAAGGCTTTCTTTCTTCTAGCTTTAGCATAATTATGGAAGAACTTTGTGTTCTCATCCCCTTTCAGCCTCCATTTGAGCTTTAAATTTTTGTCTCAAAAACTTATCTTCTTTAAGAATGAACTCGTCCAGTTGAGCTTTAAAATTGCTCTTTCTCTGGTTTGATCAACACTAATGTATCGGATCTCATCAAAACTCTCTAGCTAAACGTGTTTGGGCGAGAGTAGTACTAAGTTGGGTGACCACTTCCGTCCAAAAAATGAGTAGCTCTTTCTCTAAACTCAGGGGGCAAAGAGCCGACTGTTTTTCTCATCACCATCCAAAGAACCAAGGGGGTATTTGCGGCAGGAACTCCAAGAAGTTATGAACTTTTGGGCTCACAGTGTAAGGAGTTAATAAGGCATAAAATTGATGTTGTTTAGTTGTGGGGTCGACGAATTCCTTGGGCAAATCAAGGAGTGGAGTTCACAACTCCACACTTCCCAACTCCTTGGGCCAAACACCTCCTAAAGGCTTTGAGAATTTCCTCTTTTGAGATGCCAATAATGCCAAAATTTTCCTTATTCTAGCTTTTCAACAACGGTTTTATCCTCTTCAACTTATGTAGAACCAAAATCGGGCTAGCCTTGAAGATTTAATTTCTTCCATTCACAGTCAAAGAATTTCATGAAGCTTTTATCACTCAACCACATTTTCAAAATGAAATAGCATTGGTCCCCAAGAAAGTTTGTTCGTCACCATAGCAATGGGAAAGTGACGAGAAGTAATTCTATAAATAATCAAAGCTATGGATGAGGGAACTTCTCCGCCTGTATTGGAGAAGTTCATGTTCCTTTCCCTCATCATGATCCGAAACATGAAGCTCTCAAGGAGGGAAAGGAACATGATGAGGGAGCTTCTCCACCTATATTGGAGAAGTTCTTACATGAGCGTGATGCTTTGTGGAGGAAACTCATTGTGGCTAAGTACTATTTTCCCACCTGTATTTGGCTGACTACTATTCGTGGTTCATCTAAATCTTTGTGATGGTTTATATGTCAAACCATTGCTTTGGTTAAAGCTCGTACTGAGTGTTGCCTTGGTATGGGTACATCTATTTCATTTTGGAAAGATAATTGGCTTAATTGTGGTGTTCTCTCTATGGCTTTCCCTAGATTGTTTCGCCTTGCTTGTCTTCCTGATATTACGATGGTTGATGTGTGGATTGTTGATTCAGAGGCTTGGGACTTTCGTCTTCATCGAAATTTTAATGAGCTTGAAACTATAGAATGGGCTTCTTTATCTCAGTTGTTGTTCTCTGTCAGATTTTGCCTCTCACCTGATCATGGCGATGGACTATTGACCCTTCTTTTCTTCTGTGAAATCTCTCATGGATGATTTGATGAGAAATGTGGATTCTCCTACAAAGGATTTATATCCTGCCGTTTGGATGGATCATTACCCTAAGAAAATAAAAATTTTCTTGTGGGAGCTTAGTCGTGGTACTGTCAACACTGTTGATCGTCTATAACGTCGTGTGCCTTATTTGTCTTTATCTCGATCTTGGTGTGTTATGTGCCAAAACCATTCTAAGTTCCCAAATCATCTATTTATGCATTGTTCTTTTGCTTCAGGTTTCTGGCATATTATTCTGAATGTTTTTGGTTGGTCGTTAGCCTACTCAGACAATATTTTTGATGTCCTGGCATCTCTTTGGTGGGCCATGCGTTTCATGGTACAAAGAAGTTTGGTTGGTTGGCCATTGTTCGTGCCTTTCTCTAGTCTTTATGGGGCGAGCGCAATAAACGTCTCTTCCAAGATTCATTTTCTTGTTTTGATAGTTTCATGAATTTGGTTTTGTCTACTAGTCTTTATTGGTGCAAAACAAGGCACCCCTTTAAGCTTTTTATTCTTTCCTATTTAGTTTTTTAATTGGAAATCTCTTTTGTTAACACCTATAGGTGCTTGGAGTCTCCCGTTATTTCATTTATTCAGTGAAATGTTTCTCTTAAAAAAAAAAAGAGGGAAAAGAAAGATTGCTCTCTATCATTTCTTTTTTTTTTCTTTTTGACATGTCCCTTGCTTTCATACTAGACTGCAATATTGGTTCATGTTAGGACATGATGGATTGATATGCTAGTAATTTGGCAATTTTTACTTGGAATATCATGGAAATAACCCTCTGAAAATATCAAGTTTTAGACCTATAAGCAAACGAAAGTTATAAGAATCCTCTGATAACATTGAGAATTTGATGTTTGTGTCGATGTGGTGCTAGTGTATTGCTGTAATTGACAGTACTGACGTTTCCCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTTAAAACTGGGCCGTCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGGTAAATGACCCTTCCTCGTTTTGATTATCTTAATTCTTTTTTTTCCTATTTGTCTTTTATTTAGATTTGTGCCAACAAACATTAGCTACTTTTTAATAGTTTTATTATCTATTCCACCTACTTTGTTGTGAAATCTTTCCGCAAGGCAACTGGATTTGGATTTGTGAAAGAAGAGTTTTAGGGGATCTTTTGTTGTGTTGATTCTCTTGATTTCTGAGCATGACCGATACACAGTAACATCTGTATTCCATTCTCCCTAAATCTACACACGATGTTTTAAATCATTCCCTAAACGAAGTTTGCTTTCAAAAATTCGTTTATTTCCCTTTTTCCCCTCCATGTGTTTTTTTTTTTTTTAGATTTTTAATTTTTAAAATCATAGTTTGTATGAGCGGGGATGTTTTCTGTTTAGCAATCTGATGCTGAATCAATAGATGGCCTGAGCTTTGTTATTTTTTTTCATTATTTCTGAAATACTGTTTGTTGCAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAATTATGCACTAAGACCTCAGAAGCTGAAGAGTTACCAACTGCATAGAGCTCTAGTGGACTGCAATATCGAGTCATTTGTGTCTATTGACCTGAACCCAAAAGGCTTTTTACTTCTTGTAAATGTCATGTTAATCTTAAGCTGGAACTATGTCTATATGTCTTTATAAATTCAATATAAGTGAGCCACATATTTAATGTTTCAGCCATTTCAGTGTTGTTTTCTTATCATCTATTTCCTTAGAACGGATATGATATGATGCAGGAAGGTTAGTTTAGTTTAGTTTTTGTTCGTTTATTCTTCCAAAATCAAAATGCTGTGAGTGCAAAAGAAAAACTAAAATATAACTATGGTCATAGAGAACCCATTCACAGTAAATTTAGAGAAAGTTATTGTCATTTGAAAACAAAAATTACCAATCC

mRNA sequence

ATTTAATCCAAAAAAAATAAAAAAAAAAATAAATTTGTCCAACATTCGGCAAAGATATATTTCCCCGAATATCAGAGCTTCAAGGGAAGGTAGATGGGAGTTTTAATATTGGGCAGCAAAAGGGTGGTGAGCCTGTGAGGTTTGCGATCATTCAGTTCACATCACACTAGCCTCTCCAAATCGATCCGCTTCGAACTACTTGCGTAAGGAGAAGGCAAAAAGAAAGAACCCCCGAATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGTACTGACGTTTCCCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTTAAAACTGGGCCGTCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAATTATGCACTAAGACCTCAGAAGCTGAAGAGTTACCAACTGCATAGAGCTCTAGTGGACTGCAATATCGAGTCATTTGTGTCTATTGACCTGAACCCAAAAGGCTTTTTACTTCTTGTAAATGTCATGTTAATCTTAAGCTGGAACTATGTCTATATGTCTTTATAAATTCAATATAAGTGAGCCACATATTTAATGTTTCAGCCATTTCAGTGTTGTTTTCTTATCATCTATTTCCTTAGAACGGATATGATATGATGCAGGAAGGTTAGTTTAGTTTAGTTTTTGTTCGTTTATTCTTCCAAAATCAAAATGCTGTGAGTGCAAAAGAAAAACTAAAATATAACTATGGTCATAGAGAACCCATTCACAGTAAATTTAGAGAAAGTTATTGTCATTTGAAAACAAAAATTACCAATCC

Coding sequence (CDS)

ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGTACTGACGTTTCCCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTTAAAACTGGGCCGTCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAA

Protein sequence

MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Homology
[Close]
BLAST of Lsi09G009740 vs. ExPASy Swiss-Prot
Match: Q9CXL1 (Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-09
Identity = 43/145 (29.66%), Postives = 64/145 (44.14%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V
Sbjct: 14  MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCGVIATIAFLMINAV 73

Query: 61  RKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVW 120
               +    Y EG            ++WLF  ++++F SL AS+ +L    V K    V+
Sbjct: 74  SNGQVRGDSYSEGCLG-----QTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKDVVY 133

Query: 121 TGVAGVLQCVFVLVSGLIYWTSHSE 144
            G+A   Q  F+   GL++    +E
Sbjct: 134 PGIAVFFQNAFIFFGGLVFKFGRTE 153

[Close]
BLAST of Lsi09G009740 vs. ExPASy Swiss-Prot
Match: O95807 (Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 40/131 (30.53%), Postives = 60/131 (45.80%), Query Frame = 0 

Query: 15  AGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGE 74
           AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y EG 
Sbjct: 28  AGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGC 87

Query: 75  WSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLV 134
                      ++WLF  ++++F SL AS+ +L    V K    V+ G+A   Q  F+  
Sbjct: 88  LG-----QTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFF 147

Query: 135 SGLIYWTSHSE 144
            GL++    +E
Sbjct: 148 GGLVFKFGRTE 153

[Close]
BLAST of Lsi09G009740 vs. ExPASy Swiss-Prot
Match: Q3SZL9 (Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06
Identity = 41/145 (28.28%), Postives = 63/145 (43.45%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVW 120
               +    YE G            ++WLF  +++ F SL AS+ +L   + V     V+
Sbjct: 76  SNAQVRGDSYESGCLGR-----TGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVY 135

Query: 121 TGVAGVLQCVFVLVSGLIYWTSHSE 144
            G+A   Q   +  S LIY    +E
Sbjct: 136 PGLAVFFQNALIFFSTLIYKFGRTE 154

[Close]
BLAST of Lsi09G009740 vs. ExPASy Swiss-Prot
Match: P56557 (Transmembrane protein 50B OS=Homo sapiens OX=9606 GN=TMEM50B PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06
Identity = 41/145 (28.28%), Postives = 63/145 (43.45%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVW 120
               +    YE G            ++WLF  +++ F SL AS+ +L   + V     V+
Sbjct: 76  SNAQVRGDSYESGCLGR-----TGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVY 135

Query: 121 TGVAGVLQCVFVLVSGLIYWTSHSE 144
            G+A   Q   +  S LIY    +E
Sbjct: 136 PGLAVFFQNALIFFSTLIYKFGRTE 154

[Close]
BLAST of Lsi09G009740 vs. ExPASy Swiss-Prot
Match: A9CAZ8 (Transmembrane protein 50B OS=Papio anubis OX=9555 GN=TMEM50B PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06
Identity = 41/145 (28.28%), Postives = 63/145 (43.45%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVW 120
               +    YE G            ++WLF  +++ F SL AS+ +L   + V     V+
Sbjct: 76  SNAQVRGDSYESGCLGR-----TGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVY 135

Query: 121 TGVAGVLQCVFVLVSGLIYWTSHSE 144
            G+A   Q   +  S LIY    +E
Sbjct: 136 PGLAVFFQNALIFFSTLIYKFGRTE 154

[Close]
BLAST of Lsi09G009740 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.4e-69
Identity = 134/143 (93.71%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. ExPASy TrEMBL
Match: A0A6J1CJN8 (transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 132/143 (92.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. ExPASy TrEMBL
Match: A0A6J1FCW9 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.1e-68
Identity = 132/143 (92.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFAS AALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. ExPASy TrEMBL
Match: A0A6J1JKY2 (transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.1e-67
Identity = 132/143 (92.31%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG S WTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSH+E
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHTE 135

[Close]
BLAST of Lsi09G009740 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 134/143 (93.71%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFIHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 134/143 (93.71%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. NCBI nr
Match: XP_022993057.1 (transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. NCBI nr
Match: XP_004140320.1 (transmembrane protein 50A [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 5.8e-68
Identity = 133/143 (93.01%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDSVVK GPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKAGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. NCBI nr
Match: XP_022141734.1 (transmembrane protein 50A [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 7.5e-68
Identity = 132/143 (92.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTG
Sbjct: 61  EDIDYSPYEEGEW--------RLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 121 VAGVLQCVFVLVSGLIYWTSHSE 135

[Close]
BLAST of Lsi09G009740 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-65
Identity = 118/143 (82.52%), Postives = 126/143 (88.11%), Query Frame = 0 

Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V F+HYLPGIFAS  ALMFNCVRK
Sbjct: 1   MDLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTG 120
           EDIDYSPY+EGEW        RLKLWLF AYVV+FVSLAASVGLLIQDSVVKTGPS WTG
Sbjct: 61  EDIDYSPYDEGEW--------RLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWTG 120

Query: 121 VAGVLQCVFVLVSGLIYWTSHSE 144
           VAGV QCVFVL+SGL+YWTSHSE
Sbjct: 121 VAGVFQCVFVLISGLMYWTSHSE 135

The following BLAST results are available for this feature:
BLAST of Lsi09G009740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CXL16.3e-0929.66Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1[more]
O958071.1e-0830.53Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1[more]
Q3SZL92.9e-0628.28Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1[more]
P565572.9e-0628.28Transmembrane protein 50B OS=Homo sapiens OX=9606 GN=TMEM50B PE=1 SV=2[more]
A9CAZ82.9e-0628.28Transmembrane protein 50B OS=Papio anubis OX=9555 GN=TMEM50B PE=3 SV=1[more]
BLAST of Lsi09G009740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CCJ87.4e-6993.71transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1[more]
A0A6J1JRP91.6e-6893.01transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1[more]
A0A6J1CJN83.7e-6892.31transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV... [more]
A0A6J1FCW98.1e-6892.31transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=... [more]
A0A6J1JKY23.1e-6792.31transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 ... [more]
BLAST of Lsi09G009740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038874577.11.2e-6893.71transmembrane protein 50A [Benincasa hispida][more]
XP_008460472.11.5e-6893.71PREDICTED: transmembrane protein 50A [Cucumis melo][more]
XP_022993057.13.4e-6893.01transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane prote... [more]
XP_004140320.15.8e-6893.01transmembrane protein 50A [Cucumis sativus][more]
XP_022141734.17.5e-6892.31transmembrane protein 50A [Momordica charantia][more]
BLAST of Lsi09G009740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36980.11.3e-6582.52unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007919Uncharacterised protein family UPF0220PFAMPF05255UPF0220coord: 13..141
e-value: 2.0E-22
score: 79.5
IPR007919Uncharacterised protein family UPF0220PANTHERPTHR13180SMALL MEMBRANE PROTEIN-RELATEDcoord: 3..143
NoneNo IPR availablePANTHERPTHR13180:SF3OS02G0566900 PROTEINcoord: 3..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G009740.1Lsi09G009740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component GO:0016021 integral component of membrane