Lsi09G008790 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G008790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	chr09: 10256943 .. 10260409 (+)
RNA-Seq Expression	Lsi09G008790
Synteny	Lsi09G008790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACTTGGAAGAAACTTTTGTTAGGTAAACATCCAATTATTCCATAGTCAATTTTAGATTTCTAAGACTGTATCACAAACACCGACTTCTCAAACTTAGACTCCAAACACAAACTTCTTAAACTTAGACGTCAAAAACCTGCCTTGCAACCATTGTATTCCAAACCTGCGCGCCATCACTTTGATTTACGAAGGAATACCCATCCCTTTGATTTCAATTTCACTCTCATCTTCTCGCCTTCTCCCTGTCCCTGCTTGAAGCTGTTGCCGCGTCGCCGCCTCTCTCCGTTCAGCGCCGCCGACGCCACCCTCGTACCGGTATTCTCTCGATCTCCATCTATGTCGTTCTTCACTAGAAAGAAAGTTAGCTTTACTTAACAGAACAATCTCAGCATATAGTTGGGGGTTTGATGTTAAGATCAAATACCGCTCTGAATTTATTGGTTGAAAATCGATTCTGTGTAATACTCACAGACCCATAACATCGATCGGTTTGGTATTTTTGCACGATCCCAAATTGAGTCGAGAAAACCCTATTATCTGCAATTCGCTTTTGCTATTGTGGCTAGTTGTTCTTTAACCTATCATTCTCAGATTCGGTTTCTTCTTAGTCTTCTTCAGCATGTGTTTGACTGTAATCTTTGTGTTGAACTTTTCTTTCGCCATAGAAGTTGCATTGATTGAGTTCATGTGTTCAGGTAAAGAGAGCCAATATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTCCGTGAGAACCTGGTGTCAAAACTTATGAAAGATGTTGAGGGCACTTGCAGGTTTCTTAACTATTTTCCCTACCACATTCCTCTTGCTGTTATTTTCTTTTTTCTTAATTTTAGAGCAAAATGCATGTGATAAGATGAATTTCTAGATTTGATCGAGAGGGGTTGGACTTCTGAGATACATGTGAAAACTGAAAAAGATTTCTCAGATTTTTACATTACTTGTTTTAGTAAACATCCAACTCTCATTGAAGCAAAGAAACTTCCAAGTTCTAATGGGGTGATGAACAGAAGTTCAGATTACTAATTGGGCAATTGATGTTGGTAGTCAAATATTAGGGAAATTTTTTATTTATCTATACTAGACATGTTTTTAGTTTTTAAATCTTGATTTGAAATATTCAAAGAAGTGAGAAATACAAAAAAAAGGTTAGGATGGTATTGGGTCACACTCCATTGATATTAGAATTAGGGTAACTTTTTCTATGAACGTGAGATCTTTACTGCTCAAACCAGGGAAAGACATTCTCCTCTAACACCATGCACAAAGGCTCAAAATTGCCTTCATGGGATAGAGGGAGCATGACTGAATGTATATGCATGTCATTTCATCTTCATATAAAGAAAAACATGATCAGTTCATGAACAAATAAAAACAGTTTGATGGATGATATTTTTTTTTTGAAACTTTGATACTTTTTTCAACTAGTGAACTGTCATTATTGATAAAATTTTGTATGTTGACACAGTGGCCGACATGGTTTCGTGGTAGCAATCACGGGAATTGAGAATATTGGAAAAGGGTTGATTCGTGACGGGACAGGTTTCGTCACTTTTCCCGTCAAATACCAGTGTGTCGTGTTTAGACCATTTAAGGGAGAAATTTTAGAAGCTGTCGTTACGATGGTAAACAAGGTATGTCTATGTCACTATTTTGCTATCTAGTAATTAAATGATGAATTTATTTTAGAAAATAAATACATTATTGACTGCAACTGCAACTATTGTAGATGGGGTTCTTTGCTGAAGCTGGACCCGTTCAAATTTTTGTTTCAAACCATGTAAGTATATATTTGTAGCACATTTCAATTCTCACTTTTTTCCTATTTGGCTCTTTATGATGTTATGAGCCACCAAGTATCTTGGGGCTTGGATTTTTTTTCGACAGTTTTATATCAACGCAAGTCATATATTCATCCTGACTACAAACATCTTATTTGTAATGAATTTATTTCCTAGCTTTCCATTATGGACTGCTTAGTTCTTGCTTACCAATCTTAGGCTAATGATCAATGCCAACGTACCAAATTTAGATGGGACAAACACCTCCTACTTGAATTTACTCCCACTAAACTGAATTTGCGATGCCAATATCTTGGCTTTTATTCCTTTCATATATTTCCCCCCATAAATGTGCTTAACTTTCACTGAAGTTATCTCACATCTTGTGTTTCAGTTGATACCGGATGATATGGAGTTTCAGTCCGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTATATTTCTATTTTACACGCATTCTCTAAACATAGACTGATAATGCTCTCTTGTTGTGTTAAATTTATTGAATTATTTCTATTTTCTTGTAGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATCGGAACTCGAGTAGATGCTACTGAAATTGTAGTGTCTTCACTTCCTTGTTTACTATTGTTTTGTTTAAAATTTATTTATTCTGTTCTCTGCGTGGTGCATGTTAATTTTTCTTTTCAATGCAAATATAATGTTTTGCCTTCATTCTTACAATTTTTAAATCGAAGGATGCACTTGGTAGCAAAGTGTTGAAAGGTTCCCAAGTTTTTAAGATCCTCACTAATTTAAAACGTTTTCCCTTTTATCTCAGTCTTGGAGTAGGCGAATATGTTGATATTATAATGATTGAATATATATATATATTAGGCTGAATGAATTTTAGTTATGAGATTATTTTTTCACTTTTTATAAAAATGTTTAAAAATTGTGTCCAGTGGTACAGTTGATCTATTTAGCATGTTTCAAGTGGTGAAAATATTCAAAACTTGATAACTCCATGTTAGTTGCTTTTGTGACTTTGATAGAATCTGTGTGCCATTATCAAATTCTGGTATCTGCTGTGACTCATTTAACTATTGCTTTTGCTTGCAGTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGAGTGATTAATGACCCTTCAGCGGCTTAGGTGTGCATCTCGTTCAGGAAATTCTTCCTTGCATTAGAATTGCCTTGGTCGGATAGATGGAGTTCAACCTGTCTTTTAGCATCTTTTGGAGTTCGCAATCCAAGTTTTTTTTGAAGAAGATTACTCTATTGAAGACATTTGTATGAATTGGAAGACATTTATTTTCACTATGTAACCAAGTTTCTTATTGTGGTTGTACTTTTTGATTTATAGATTTCGTGTATTTCTTGCATTTGAAATAGGATATGATGAGAGTGCTAAGGGGATGTAAACCTAGTTGAGATGTTCGGGTGCACTAACTGATCCTCAATACTTTTTTAAATATTTAGTTTCATTGTAATCAAGCTCTTGTTCTTTTCATTATATCGATGAAAAGTTTCGTTTGTGTTAAAAAAAAAAAAAGTTGTCAGTTTGTATATTGTTCTTTATTAATCTTGACATTGG

mRNA sequence

CTTACTTGGAAGAAACTTTTGTTAGGTAAACATCCAATTATTCCATAGTCAATTTTAGATTTCTAAGACTGTATCACAAACACCGACTTCTCAAACTTAGACTCCAAACACAAACTTCTTAAACTTAGACGTCAAAAACCTGCCTTGCAACCATTGTATTCCAAACCTGCGCGCCATCACTTTGATTTACGAAGGAATACCCATCCCTTTGATTTCAATTTCACTCTCATCTTCTCGCCTTCTCCCTGTCCCTGCTTGAAGCTGTTGCCGCGTCGCCGCCTCTCTCCGTTCAGCGCCGCCGACGCCACCCTCGTACCGGTAAAGAGAGCCAATATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTCCGTGAGAACCTGGTGTCAAAACTTATGAAAGATGTTGAGGGCACTTGCAGTGGCCGACATGGTTTCGTGGTAGCAATCACGGGAATTGAGAATATTGGAAAAGGGTTGATTCGTGACGGGACAGGTTTCGTCACTTTTCCCGTCAAATACCAGTGTGTCGTGTTTAGACCATTTAAGGGAGAAATTTTAGAAGCTGTCGTTACGATGGTAAACAAGATGGGGTTCTTTGCTGAAGCTGGACCCGTTCAAATTTTTGTTTCAAACCATTTGATACCGGATGATATGGAGTTTCAGTCCGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTATATTTCTATTTTACACGCATTCTCTAAACATAGACTGATAATGCTCTCTTGTTGTGTTAAATTTATTGAATTATTTCTATTTTCTTGTAGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATCGGAACTCGAGTAGATGCTACTGAAATTTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGAGTGATTAATGACCCTTCAGCGGCTTAGGTGTGCATCTCGTTCAGGAAATTCTTCCTTGCATTAGAATTGCCTTGGTCGGATAGATGGAGTTCAACCTGTCTTTTAGCATCTTTTGGAGTTCGCAATCCAAGTTTTTTTTGAAGAAGATTACTCTATTGAAGACATTTGTATGAATTGGAAGACATTTATTTTCACTATGTAACCAAGTTTCTTATTGTGGTTGTACTTTTTGATTTATAGATTTCGTGTATTTCTTGCATTTGAAATAGGATATGATGAGAGTGCTAAGGGGATGTAAACCTAGTTGAGATGTTCGGGTGCACTAACTGATCCTCAATACTTTTTTAAATATTTAGTTTCATTGTAATCAAGCTCTTGTTCTTTTCATTATATCGATGAAAAGTTTCGTTTGTGTTAAAAAAAAAAAAAGTTGTCAGTTTGTATATTGTTCTTTATTAATCTTGACATTGG

Coding sequence (CDS)

ATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTCCGTGAGAACCTGGTGTCAAAACTTATGAAAGATGTTGAGGGCACTTGCAGTGGCCGACATGGTTTCGTGGTAGCAATCACGGGAATTGAGAATATTGGAAAAGGGTTGATTCGTGACGGGACAGGTTTCGTCACTTTTCCCGTCAAATACCAGTGTGTCGTGTTTAGACCATTTAAGGGAGAAATTTTAGAAGCTGTCGTTACGATGGTAAACAAGATGGGGTTCTTTGCTGAAGCTGGACCCGTTCAAATTTTTGTTTCAAACCATTTGATACCGGATGATATGGAGTTTCAGTCCGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTATATTTCTATTTTACACGCATTCTCTAA

Protein sequence

MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVYFYFTRIL

Homology

[Close]

BLAST of Lsi09G008790 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-72
Identity = 130/134 (97.01%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGD+PNYTTSDGSV
Sbjct: 121 SGDMPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.3e-70
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           +GD+PNYTTSDGSV
Sbjct: 121 AGDMPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-39
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSV 135
            + + P Y T D  +
Sbjct: 121 PNSNPPCYKTMDEDI 135

[Close]

BLAST of Lsi09G008790 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-39
Identity = 74/135 (54.81%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSV 135
            + + P Y T D  V
Sbjct: 121 PNSNPPCYKTVDEDV 135

[Close]

BLAST of Lsi09G008790 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-39
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSV 135
            + + P Y T D  +
Sbjct: 121 PNSNPPCYKTMDEDI 135

[Close]

BLAST of Lsi09G008790 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 121 SGDVPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.6e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 121 SGDVPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.6e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 121 SGDVPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. ExPASy TrEMBL
Match: A0A6J0ZV58 (DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=LOC110412415 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.0e-71
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGD+PNYTTSDGSV
Sbjct: 121 SGDMPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. ExPASy TrEMBL
Match: A0A2I4HHD1 (DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC109017848 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.0e-71
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGD+PNYTTSDGSV
Sbjct: 121 SGDMPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 121 SGDVPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 9.4e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 6   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 65

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 66  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 125

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 126 SGDVPNYTTSDGSV 139

[Close]

BLAST of Lsi09G008790 vs. NCBI nr
Match: XP_022923594.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022990163.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_022990164.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023525602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6601991.1 hypothetical protein SDJN03_07224, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.9 bits (707), Expect = 9.4e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 121 SGDVPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 9.4e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGDVPNYTTSDGSV
Sbjct: 121 SGDVPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. NCBI nr
Match: KAF3454638.1 (hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis])

HSP 1 Score: 276.9 bits (707), Expect = 9.4e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           SGD+PNYTTSDGSV
Sbjct: 121 SGDMPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 264.2 bits (674), Expect = 5.9e-71
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSV 135
           +GD+PNYTTSDGSV
Sbjct: 121 AGDMPNYTTSDGSV 134

[Close]

BLAST of Lsi09G008790 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 70.9 bits (172), Expect = 9.6e-13
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 43  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PVQIFVSNHLIPDDMEFQSGDVP 126
           P +I   +H+     EF  G+ P
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENP 128

[Close]

BLAST of Lsi09G008790 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 43  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 103 PVQ-IFVSNHLIPD 116
           P++ +++S   +PD
Sbjct: 107 PIENVYLSYTKMPD 120

[Close]

BLAST of Lsi09G008790 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
          MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of Lsi09G008790 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
          MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of Lsi09G008790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	1.8e-72	97.01	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	8.3e-70	94.03	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	4.4e-39	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	4.4e-39	54.81	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	4.4e-39	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of Lsi09G008790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS4	2.1e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A6J1JSG6	4.6e-71	99.25	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	4.6e-71	99.25	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J0ZV58	6.0e-71	98.51	DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=L...	[more]
A0A2I4HHD1	6.0e-71	98.51	DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC1090...	[more]

BLAST of Lsi09G008790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150740.1	4.2e-71	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011...	[more]
KAG7032688.1	9.4e-71	99.25	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022923594.1	9.4e-71	99.25	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923...	[more]
XP_038906688.1	9.4e-71	99.25	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]
KAF3454638.1	9.4e-71	99.25	hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis]	[more]

BLAST of Lsi09G008790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	5.9e-71	94.03	DNA-directed RNA polymerase II	[more]
AT3G22900.1	9.6e-13	39.76	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14660.1	4.0e-11	43.24	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	1.3e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	1.3e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 3.5E-13 score: 49.6
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..80 e-value: 1.9E-28 score: 100.6
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
None	No IPR available	GENE3D	2.40.50.140		coord: 81..136 e-value: 5.3E-17 score: 63.6
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..135
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 2..81 e-value: 3.21407E-40 score: 127.683
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..125 e-value: 1.7E-10 score: 41.1
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..135
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 78..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G008790.1	Lsi09G008790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding