Lsi09G008540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G008540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor SRM1
Location	chr09: 9858713 .. 9859388 (+)
RNA-Seq Expression	Lsi09G008540
Synteny	Lsi09G008540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACATTATGACTCGGTGGCTTGTAAATGTCAAGCTTATAACCTTAAAATTCTTCTGAGGCCTAATAAATCTGGACTTTAGAAGTTGAAGGATTTCTATGTTGCATGTGTTTATCTTTTTTGTAACATCTGCCTTAAGTTTTCAACTCCTCTATTTCTTGACAATACAGATTGTTTCTACTTGGTCTCGATAAATACGGGAAAGGAGACTGGCGGAGTATATCCCGAAACTTTGTCGTGACGAGAACACCTACTCAAGTGGCAAGCCATGCACAAAAATACTTCATTCGTTTGAACTCAATGAACAAAGAAAGGAGGCGGTCCAGCATCCACGATATCACCAGTGTTACGAACGGAGATATCTCAGCCGCTCAAGGGCCAATCACCGGTCAAGCAAACGGCTCTGGAGCAGCTCCTTCTGGAAAACCAACAAAACAGCCTCCTCAATCTGCGGCTGGTCCTCCTGGTGTGGGAATGTATGGTGGTCCAACGATGGGGCAGCCAGTGGGTGGTCCTCTCGTCTCAGCTGTTGGCACCCCTGTCAGTCTCCCTGCTCCTGCTCATATGGCATATGGAGTCCGAGCTCCTGTGCCCGGCACGGTGGTTCCTGGTGCACCTGTAAACATAGGTCCGATGACATATCCAATGCCACACACATCTGCTCATAGGTAA

mRNA sequence

ATGAATAACATTATGACTCGATTGTTTCTACTTGGTCTCGATAAATACGGGAAAGGAGACTGGCGGAGTATATCCCGAAACTTTGTCGTGACGAGAACACCTACTCAAGTGGCAAGCCATGCACAAAAATACTTCATTCGTTTGAACTCAATGAACAAAGAAAGGAGGCGGTCCAGCATCCACGATATCACCAGTGTTACGAACGGAGATATCTCAGCCGCTCAAGGGCCAATCACCGGTCAAGCAAACGGCTCTGGAGCAGCTCCTTCTGGAAAACCAACAAAACAGCCTCCTCAATCTGCGGCTGGTCCTCCTGGTGTGGGAATGTATGGTGGTCCAACGATGGGGCAGCCAGTGGGTGGTCCTCTCGTCTCAGCTGTTGGCACCCCTGTCAGTCTCCCTGCTCCTGCTCATATGGCATATGGAGTCCGAGCTCCTGTGCCCGGCACGGTGGTTCCTGGTGCACCTGTAAACATAGGTCCGATGACATATCCAATGCCACACACATCTGCTCATAGGTAA

Coding sequence (CDS)

ATGAATAACATTATGACTCGATTGTTTCTACTTGGTCTCGATAAATACGGGAAAGGAGACTGGCGGAGTATATCCCGAAACTTTGTCGTGACGAGAACACCTACTCAAGTGGCAAGCCATGCACAAAAATACTTCATTCGTTTGAACTCAATGAACAAAGAAAGGAGGCGGTCCAGCATCCACGATATCACCAGTGTTACGAACGGAGATATCTCAGCCGCTCAAGGGCCAATCACCGGTCAAGCAAACGGCTCTGGAGCAGCTCCTTCTGGAAAACCAACAAAACAGCCTCCTCAATCTGCGGCTGGTCCTCCTGGTGTGGGAATGTATGGTGGTCCAACGATGGGGCAGCCAGTGGGTGGTCCTCTCGTCTCAGCTGTTGGCACCCCTGTCAGTCTCCCTGCTCCTGCTCATATGGCATATGGAGTCCGAGCTCCTGTGCCCGGCACGGTGGTTCCTGGTGCACCTGTAAACATAGGTCCGATGACATATCCAATGCCACACACATCTGCTCATAGGTAA

Protein sequence

MNNIMTRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSVTNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR

Homology

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BLAST of Lsi09G008540 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.3e-52
Identity = 122/180 (67.78%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRSSIHDITSV
Sbjct: 126 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSV 185

Query: 67  TNGDISAAQGPITGQ----------ANGSGAAPSGKPTKQPPQSAA-GPPGVGMYGGPTM 126
            N D+S  QGPITGQ           N S  A +G   K   Q+ +  PPG  MYG P +
Sbjct: 186 GNADVSTPQGPITGQNNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAI 245

Query: 127 GQPVGGPLVSAVGTPVSLPAPAHMAYGVR-APVPGTVVPGAPVNIGPMTYPMPHT-SAHR 174
           GQP       AVGTPV+LPAP HMAYGV  APVPG+VVPGA +NIG M Y MP T +AHR
Sbjct: 246 GQP-------AVGTPVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR 298

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BLAST of Lsi09G008540 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.2e-35
Identity = 98/175 (56.00%), Postives = 109/175 (62.29%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDK+GKGDWRSISRNFV++RTPTQVASHAQKYFIRLNSMN++RRRSSIHDITSV
Sbjct: 150 RLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSV 209

Query: 67  TNGDISAAQ--GPITG-QANGSGAA----PSGKPTKQPPQSAAGPPGVGMYGGPTMGQPV 126
           T GD  AAQ   PITG QA G+ AA    P G            PP + MY    MG PV
Sbjct: 210 TAGDQVAAQQGAPITGHQATGNPAAAALGPPGMKHHHHHHPGGAPPPMPMYSAAPMGHPV 269

Query: 127 GGPLV-SAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
            G +V +AVGTPV  P P H  Y V                 P+ YP P    H+
Sbjct: 270 AGHMVPAAVGTPVVFP-PGHAPYVV-----------------PVGYPAPPAKMHQ 306

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BLAST of Lsi09G008540 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.2e-35
Identity = 98/175 (56.00%), Postives = 109/175 (62.29%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDK+GKGDWRSISRNFV++RTPTQVASHAQKYFIRLNSMN++RRRSSIHDITSV
Sbjct: 150 RLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSV 209

Query: 67  TNGDISAAQ--GPITG-QANGSGAA----PSGKPTKQPPQSAAGPPGVGMYGGPTMGQPV 126
           T GD  AAQ   PITG QA G+ AA    P G            PP + MY    MG PV
Sbjct: 210 TAGDQVAAQQGAPITGHQATGNPAAAALGPPGMKHHHHHHPGGAPPPMPMYSAAPMGHPV 269

Query: 127 GGPLV-SAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
            G +V +AVGTPV  P P H  Y V                 P+ YP P    H+
Sbjct: 270 AGHMVPAAVGTPVVFP-PGHAPYVV-----------------PVGYPAPPAKMHQ 306

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BLAST of Lsi09G008540 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           +LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  K++RR+SIHDIT+V
Sbjct: 140 KLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTV 199

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAA 103
              D            N + +  + KP   P  S A
Sbjct: 200 NLSD------------NQTPSPDNKKPPSSPDHSMA 223

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BLAST of Lsi09G008540 vs. ExPASy Swiss-Prot
Match: Q2V9B0 (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-19
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITS 66
           +LFLLGL K GKGDWR ISRNFV TRTPTQVASHAQKYF+R +++N+ RRRSS+ DIT+
Sbjct: 103 KLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITT 161

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BLAST of Lsi09G008540 vs. ExPASy TrEMBL
Match: A0A0A0KTA8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G353650 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.6e-84
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
            NGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA
Sbjct: 189 ANGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMP TSAHR
Sbjct: 249 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. ExPASy TrEMBL
Match: A0A1S3CNM4 (transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103502813 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.5e-84
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
            NGDISA QGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA
Sbjct: 189 ANGDISATQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMP TSAHR
Sbjct: 249 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

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BLAST of Lsi09G008540 vs. ExPASy TrEMBL
Match: A0A6J1HIF2 (transcription factor SRM1 OS=Cucurbita moschata OX=3662 GN=LOC111463273 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.4e-82
Identity = 158/167 (94.61%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
           TNGD+SAAQGPITGQANGS AAPSGKPTKQPPQ AAGPPGVGMYGGPT+GQPVGG +VSA
Sbjct: 189 TNGDVSAAQGPITGQANGSVAAPSGKPTKQPPQPAAGPPGVGMYGGPTIGQPVGGAVVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPV++PAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMPHTSAHR
Sbjct: 249 VGTPVNIPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPHTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. ExPASy TrEMBL
Match: A0A6J1CIJ0 (transcription factor SRM1-like OS=Momordica charantia OX=3673 GN=LOC111011919 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 157/167 (94.01%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
           TNGDISAAQGPITGQANG  AAPSGKPTKQPPQ AAGPPGVGMYGGPTMGQPVGGPLVSA
Sbjct: 189 TNGDISAAQGPITGQANGPAAAPSGKPTKQPPQPAAGPPGVGMYGGPTMGQPVGGPLVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPV++P PAHMAYGVR PVPG VVPGAPVN+GPM YPMPHTSAHR
Sbjct: 249 VGTPVNIPTPAHMAYGVRGPVPGAVVPGAPVNMGPMAYPMPHTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. ExPASy TrEMBL
Match: A0A6J1JR65 (transcription factor SRM1 OS=Cucurbita maxima OX=3661 GN=LOC111487105 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 157/167 (94.01%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
           TNGD+SAAQGPITGQANGS AAPSGKPTKQPPQ AAGPPGVGMYGGPT+GQPVGGP+VSA
Sbjct: 189 TNGDVSAAQGPITGQANGSVAAPSGKPTKQPPQPAAGPPGVGMYGGPTIGQPVGGPVVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPV++PAPAHMAYGVRAPV G VVPGAPVN+GPMTYPMPHTSAHR
Sbjct: 249 VGTPVNIPAPAHMAYGVRAPVAGAVVPGAPVNMGPMTYPMPHTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. NCBI nr
Match: XP_004149865.1 (transcription factor SRM1 [Cucumis sativus] >XP_011655162.1 transcription factor SRM1 [Cucumis sativus] >XP_011655164.1 transcription factor SRM1 [Cucumis sativus] >XP_031741792.1 transcription factor SRM1 [Cucumis sativus] >XP_031741793.1 transcription factor SRM1 [Cucumis sativus] >KGN50946.1 hypothetical protein Csa_023078 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-84
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
            NGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA
Sbjct: 189 ANGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMP TSAHR
Sbjct: 249 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. NCBI nr
Match: XP_008465139.1 (PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465150.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465157.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465164.1 PREDICTED: transcription factor DIVARICATA-like [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
            NGDISA QGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA
Sbjct: 189 ANGDISATQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMP TSAHR
Sbjct: 249 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. NCBI nr
Match: KAG7032676.1 (Transcription factor SRM1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 159/167 (95.21%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 160 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 219

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
           TNGD+SAAQGPITGQANGS AAPSGKPTKQPPQ AAGPPGVGMYGGPT+GQPVGGP+VSA
Sbjct: 220 TNGDVSAAQGPITGQANGSVAAPSGKPTKQPPQPAAGPPGVGMYGGPTIGQPVGGPVVSA 279

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPV++PAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMPHTSAHR
Sbjct: 280 VGTPVNIPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPHTSAHR 326

[Close]

BLAST of Lsi09G008540 vs. NCBI nr
Match: XP_023536896.1 (transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536902.1 transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536911.1 transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536920.1 transcription factor SRM1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 159/167 (95.21%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
           TNGD+SAAQGPITGQANGS AAPSGKPTKQPPQ AAGPPGVGMYGGPT+GQPVGGP+VSA
Sbjct: 189 TNGDVSAAQGPITGQANGSVAAPSGKPTKQPPQPAAGPPGVGMYGGPTIGQPVGGPVVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAHR 174
           VGTPV++PAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMPHTSAHR
Sbjct: 249 VGTPVNIPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPHTSAHR 295

[Close]

BLAST of Lsi09G008540 vs. NCBI nr
Match: KAG6601977.1 (Transcription factor SRM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314.3 bits (804), Expect = 6.5e-82
Identity = 158/166 (95.18%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV
Sbjct: 129 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 188

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAGPPGVGMYGGPTMGQPVGGPLVSA 126
           TNGD+SAAQGPITGQANGS AAPSGKPTKQPPQ AAGPPGVGMYGGPT+GQPVGGP+VSA
Sbjct: 189 TNGDVSAAQGPITGQANGSVAAPSGKPTKQPPQPAAGPPGVGMYGGPTIGQPVGGPVVSA 248

Query: 127 VGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHTSAH 173
           VGTPV++PAPAHMAYGVRAPVPGTVVPGAPVN+GPMTYPMPHTSAH
Sbjct: 249 VGTPVNIPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPHTSAH 294

[Close]

BLAST of Lsi09G008540 vs. TAIR 10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 3.0e-53
Identity = 122/180 (67.78%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RRRSSIHDITSV
Sbjct: 126 RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSV 185

Query: 67  TNGDISAAQGPITGQ----------ANGSGAAPSGKPTKQPPQSAA-GPPGVGMYGGPTM 126
            N D+S  QGPITGQ           N S  A +G   K   Q+ +  PPG  MYG P +
Sbjct: 186 GNADVSTPQGPITGQNNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAI 245

Query: 127 GQPVGGPLVSAVGTPVSLPAPAHMAYGVR-APVPGTVVPGAPVNIGPMTYPMPHT-SAHR 174
           GQP       AVGTPV+LPAP HMAYGV  APVPG+VVPGA +NIG M Y MP T +AHR
Sbjct: 246 GQP-------AVGTPVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR 298

[Close]

BLAST of Lsi09G008540 vs. TAIR 10
Match: AT1G49010.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.4e-34
Identity = 95/173 (54.91%), Postives = 109/173 (63.01%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           RLFLLGLDK+GKGDWRSISRNFV++RTPTQVASHAQKYFIRLNSMN++RRRSSIHDIT+V
Sbjct: 142 RLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITTV 201

Query: 67  TNGDISAAQGPITGQ-ANGSGAAPSGKPTKQPPQSAAGPP---GVGMYGGPTMGQPVGGP 126
            N   +   G    Q      A P  +P  QP Q    PP   G+GMYGG  +GQP+  P
Sbjct: 202 NNQAPAVTGGGQQPQVVKHRPAQPQPQPQPQPQQH--HPPTMAGLGMYGGAPVGQPIIAP 261

Query: 127 ---LVSAVGTPVSLPAPA---HMAYGVRAPVPGTVVPGAPVNIGPMTYPMPHT 170
              + SAVGTPV LP P    H  +     V    VP  PV   P  +P P T
Sbjct: 262 PDHMGSAVGTPVMLPPPMGTHHHHHHHHLGVAPYAVPAYPVPPLPQQHPAPST 312

[Close]

BLAST of Lsi09G008540 vs. TAIR 10
Match: AT5G23650.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 86/204 (42.16%), Postives = 105/204 (51.47%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           R FL GL KYGKGDWRSISR+ VVTRT TQVASHAQKYF  +NS +K+R+R SIHDIT  
Sbjct: 128 RQFLHGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKYFAHINSEDKKRKRPSIHDITIA 187

Query: 67  TNGDISAAQGPITGQ-ANGSGAAPS----------------------------------- 126
            N  IS  Q PIT Q  N +GA  S                                   
Sbjct: 188 ENKSISTKQRPITWQKINNNGATASNTQANQTTLQPSLDIPIYGTHNNIWNAQATQVISQ 247

Query: 127 ---GKPTKQPP-----QSAAGP-PGVGMYGGPTMGQPVGGPLVSAVGTPVSLPAPAHMAY 165
                PT   P     Q A+ P   + MYG  T+ QP+ GP++S  GT ++  AP+HM  
Sbjct: 248 PSQNHPTYDAPIIWNTQVASQPSANIPMYGTSTISQPMVGPMLSPFGTNLNHLAPSHMTS 307

[Close]

BLAST of Lsi09G008540 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-22
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           +LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  K++RR+SIHDIT+V
Sbjct: 149 KLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTV 208

[Close]

BLAST of Lsi09G008540 vs. TAIR 10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 7   RLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERRRSSIHDITSV 66
           +LFL+GL +YGKGDWRSISRN VVTRTPTQVASHAQKYF+R NS+ KER+RSSIHDIT+V
Sbjct: 107 KLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTV 166

Query: 67  TNGDISAAQGPITGQANGSGAAPSGKPTKQPPQSAAG 104
              D + A         G   +P   P +Q   S  G
Sbjct: 167 ---DATLAMPGSNMDWTGQHGSPVQAPQQQQIMSEFG 200

The following BLAST results are available for this feature:

BLAST of Lsi09G008540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNN6	4.3e-52	67.78	Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1	[more]
B8A9B2	6.2e-35	56.00	Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ...	[more]
Q8LH59	6.2e-35	56.00	Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=...	[more]
Q8S9H7	1.3e-19	56.25	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]
Q2V9B0	6.2e-19	74.58	Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]

BLAST of Lsi09G008540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTA8	2.6e-84	98.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G353650 PE=4 SV=1	[more]
A0A1S3CNM4	7.5e-84	97.60	transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103502813 PE=...	[more]
A0A6J1HIF2	5.4e-82	94.61	transcription factor SRM1 OS=Cucurbita moschata OX=3662 GN=LOC111463273 PE=4 SV=...	[more]
A0A6J1CIJ0	1.6e-81	94.01	transcription factor SRM1-like OS=Momordica charantia OX=3673 GN=LOC111011919 PE...	[more]
A0A6J1JR65	2.0e-81	94.01	transcription factor SRM1 OS=Cucurbita maxima OX=3661 GN=LOC111487105 PE=4 SV=1	[more]

BLAST of Lsi09G008540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149865.1	5.3e-84	98.20	transcription factor SRM1 [Cucumis sativus] >XP_011655162.1 transcription factor...	[more]
XP_008465139.1	1.5e-83	97.60	PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >XP_008465150.1 P...	[more]
KAG7032676.1	1.3e-82	95.21	Transcription factor SRM1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023536896.1	1.3e-82	95.21	transcription factor SRM1 [Cucurbita pepo subsp. pepo] >XP_023536902.1 transcrip...	[more]
KAG6601977.1	6.5e-82	95.18	Transcription factor SRM1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi09G008540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08520.1	3.0e-53	67.78	Duplicated homeodomain-like superfamily protein	[more]
AT1G49010.1	5.4e-34	54.91	Duplicated homeodomain-like superfamily protein	[more]
AT5G23650.1	1.3e-24	42.16	Homeodomain-like transcriptional regulator	[more]
AT5G58900.1	8.1e-22	78.33	Homeodomain-like transcriptional regulator	[more]
AT5G04760.1	1.1e-21	58.76	Duplicated homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 7..47 e-value: 1.1E-11 score: 42.9
None	No IPR available	GENE3D	1.10.10.60		coord: 6..51 e-value: 8.5E-12 score: 47.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..97
None	No IPR available	PANTHER	PTHR44191:SF21	TRANSCRIPTION FACTOR SRM1	coord: 7..169
None	No IPR available	PANTHER	PTHR44191	TRANSCRIPTION FACTOR KUA1	coord: 7..169
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 8..44 e-value: 4.2E-6 score: 26.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 7..49 score: 11.747356
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 7..45 e-value: 8.79722E-6 score: 39.0958
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 6..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G008540.1	Lsi09G008540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901001	negative regulation of response to salt stress
biological_process	GO:0010116	positive regulation of abscisic acid biosynthetic process
biological_process	GO:1905615	positive regulation of developmental vegetative growth
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:0009739	response to gibberellin
biological_process	GO:0009751	response to salicylic acid
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding