Lsi09G007260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G007260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	sodium/hydrogen exchanger 8
Location	chr09: 8361279 .. 8362389 (+)
RNA-Seq Expression	Lsi09G007260
Synteny	Lsi09G007260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATCATTTGCCAAATAGCTTTGAAGGCCGTAAATACTCTCCCCTTTGTATACCATGAATTTATCTTCGCGACTGTAAATTGTTAGCATAAAAGAAAAAAGGAACAAGCTTGGTCAGATCATAACATATTAACTTCACTGAACCATTGGATCCCATTTTATACTTTTAGCTTAATTTCAAATAAAGAAATCCCAGGACCCTACTTCCTCAAAGTATTTCAAGAAATCCATGGTGTTAAGTCATTGACAGGTGCATTGAACTACTCAACAGGTTTTAAAGTGATCTTTGATGAGATAATCTTAAAACTAGGTCAATCAAGATTCGGATTAATCTCATTGTGAGGAGCCTCTAAAGTAGCTGCTGTAATTACTTATAAATTAGTTCATAAACCCCTTCTTAATATGCCTCTTCAATATTCAATTAGCTTAGCGCTTCAGTTGCCAAGCAATTTCTCTCTGATTTAATGCTACTCCTGCTGAAATCAGAAACCTCATTGAATTTAATGAAGTCTTCCTCCAGAGAAAGCTGGAGCTAATTGAAATAGCTTTCTCTGAGCTCTTTTTGTTTGTGTTGGTGACTCTTTTCCCCTCCCTATTGTATTTTTCTTTTTTGGTTTCTTGAATACCACGATGTGCCGAGCCAAGATTGATTAATTGATTATATTTTTCTTAAGACGATCAAAACATCGTTCTATTGAAGGAGTCTTTGTGCTATGTGATCCTGTTGATATGATTCTCTTCTTTCTTTTTTTTTTTAAGAATTTAATATTTGTTACCAAATTGTTATAAAAAATATTTATAGAAGCAAGATTTCACATTGGTTCTATCATTTATTTTATTTAATTCTTCTGGTCTCTTCCTCTTCTCTTTCATGGGATTCTTGTTCTGTTCATGATAGGCTCAAGAGGGAGCTGATGTTTCGGGTGTTTTGACGGTGATGACTTTAGGAATGTAAGTTTATTTGCCTAATTATACACAATCTTTACTTCGAGGCTATATTTCCTGATTACAATCTACTACTAGGTTTTATGCTGCAGTCGCAAGAACAGCTTTTAAGGGTGATGGTCAACAAAGCTTACATCATTTTTGGTATATTATGCCTTTATGA

mRNA sequence

ATGGCAATCATTTGCCAAATAGCTTTGAAGGCCGTAAATACTCTCCCCTTTGTATACCATGAATTTATCTTCGCGACTGCTCAAGAGGGAGCTGATGTTTCGGGTGTTTTGACGGTGATGACTTTAGGAATGTTTTATGCTGCAGTCGCAAGAACAGCTTTTAAGGGTGATGGTCAACAAAGCTTACATCATTTTTGGTATATTATGCCTTTATGA

Coding sequence (CDS)

ATGGCAATCATTTGCCAAATAGCTTTGAAGGCCGTAAATACTCTCCCCTTTGTATACCATGAATTTATCTTCGCGACTGCTCAAGAGGGAGCTGATGTTTCGGGTGTTTTGACGGTGATGACTTTAGGAATGTTTTATGCTGCAGTCGCAAGAACAGCTTTTAAGGGTGATGGTCAACAAAGCTTACATCATTTTTGGTATATTATGCCTTTATGA

Protein sequence

MAIICQIALKAVNTLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWYIMPL

Homology

[Close]

BLAST of Lsi09G007260 vs. ExPASy Swiss-Prot
Match: Q9LKW9 (Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana OX=3702 GN=NHX7 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-14
Identity = 38/53 (71.70%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           TL      F + TAQE A  SGVLTVMTLGMFYAA ARTAFKGD Q+SLHHFW
Sbjct: 263 TLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFW 315

[Close]

BLAST of Lsi09G007260 vs. ExPASy Swiss-Prot
Match: Q3YL57 (Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana OX=3702 GN=NHX8 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-12
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 22  FIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           F + TAQE A VSG+LTVM LGMF+AA ARTAFKGD  QSLHHFW
Sbjct: 269 FAYYTAQEWAGVSGILTVMILGMFFAAFARTAFKGDSHQSLHHFW 313

[Close]

BLAST of Lsi09G007260 vs. ExPASy TrEMBL
Match: A0A2N9EI10 (Na_H_Exchanger domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2156 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.0e-15
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWYIM 70
           TL        + TAQEG DVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWY +
Sbjct: 138 TLTLAVSYIAYFTAQEGVDVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWYAL 193

[Close]

BLAST of Lsi09G007260 vs. ExPASy TrEMBL
Match: A5ADZ3 (Na_H_Exchanger domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015941 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.2e-15
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWYI 69
           TL        + TAQEGADVSGVL VMTLGMFYAAVA+TAFKGDGQQSLHHFWYI
Sbjct: 365 TLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAKTAFKGDGQQSLHHFWYI 419

[Close]

BLAST of Lsi09G007260 vs. ExPASy TrEMBL
Match: A0A6I9S429 (sodium/hydrogen exchanger 8 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056363 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 24  FATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           F TAQ+GADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW
Sbjct: 263 FFTAQDGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 305

[Close]

BLAST of Lsi09G007260 vs. ExPASy TrEMBL
Match: A0A6I9S2U4 (sodium/hydrogen exchanger 8 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056363 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 24  FATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           F TAQ+GADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW
Sbjct: 263 FFTAQDGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 305

[Close]

BLAST of Lsi09G007260 vs. ExPASy TrEMBL
Match: A0A5B7A356 (Cyclic nucleotide-binding domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_020006 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 24  FATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           + TAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW
Sbjct: 263 YFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 305

[Close]

BLAST of Lsi09G007260 vs. NCBI nr
Match: EHA8589907.1 (putative Sodium/hydrogen exchanger 7 [Cocos nucifera])

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 24  FATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWY 68
           F TAQ+GADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWY
Sbjct: 203 FFTAQDGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWY 246

[Close]

BLAST of Lsi09G007260 vs. NCBI nr
Match: CAN66617.1 (hypothetical protein VITISV_015941 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFWYI 69
           TL        + TAQEGADVSGVL VMTLGMFYAAVA+TAFKGDGQQSLHHFWYI
Sbjct: 365 TLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAKTAFKGDGQQSLHHFWYI 419

[Close]

BLAST of Lsi09G007260 vs. NCBI nr
Match: XP_008798100.1 (sodium/hydrogen exchanger 8 isoform X1 [Phoenix dactylifera])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           TL        F TAQ+GADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW
Sbjct: 253 TLTLAVSYLAFFTAQDGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 305

[Close]

BLAST of Lsi09G007260 vs. NCBI nr
Match: KAF3430996.1 (hypothetical protein FNV43_RR25726 [Rhamnella rubrinervis])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           TL        + TAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW
Sbjct: 412 TLTLAVSYIAYFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 464

[Close]

BLAST of Lsi09G007260 vs. NCBI nr
Match: XP_026662993.1 (sodium/hydrogen exchanger 7 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 14 TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
          TL        F TAQ+GADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW
Sbjct: 25 TLTLAVSYLAFFTAQDGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 77

[Close]

BLAST of Lsi09G007260 vs. TAIR 10
Match: AT2G01980.1 (sodium proton exchanger, putative (NHX7) (SOS1) )

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-15
Identity = 38/53 (71.70%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 14  TLPFVYHEFIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           TL      F + TAQE A  SGVLTVMTLGMFYAA ARTAFKGD Q+SLHHFW
Sbjct: 263 TLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFW 315

[Close]

BLAST of Lsi09G007260 vs. TAIR 10
Match: AT1G14660.1 (Na+/H+ exchanger 8 )

HSP 1 Score: 73.2 bits (178), Expect = 9.7e-14
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 22  FIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           F + TAQE A VSG+LTVM LGMF+AA ARTAFKGD  QSLHHFW
Sbjct: 269 FAYYTAQEWAGVSGILTVMILGMFFAAFARTAFKGDSHQSLHHFW 313

[Close]

BLAST of Lsi09G007260 vs. TAIR 10
Match: AT1G14660.2 (Na+/H+ exchanger 8 )

HSP 1 Score: 73.2 bits (178), Expect = 9.7e-14
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 22  FIFATAQEGADVSGVLTVMTLGMFYAAVARTAFKGDGQQSLHHFW 67
           F + TAQE A VSG+LTVM LGMF+AA ARTAFKGD  QSLHHFW
Sbjct: 269 FAYYTAQEWAGVSGILTVMILGMFFAAFARTAFKGDSHQSLHHFW 313

The following BLAST results are available for this feature:

BLAST of Lsi09G007260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKW9	5.5e-14	71.70	Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana OX=3702 GN=NHX7 PE=1 SV=1	[more]
Q3YL57	1.4e-12	75.56	Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana OX=3702 GN=NHX8 PE=2 SV=1	[more]

BLAST of Lsi09G007260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9EI10	4.0e-15	76.79	Na_H_Exchanger domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU...	[more]
A5ADZ3	5.2e-15	78.18	Na_H_Exchanger domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_01...	[more]
A0A6I9S429	2.0e-14	95.35	sodium/hydrogen exchanger 8 isoform X2 OS=Elaeis guineensis var. tenera OX=51953...	[more]
A0A6I9S2U4	2.0e-14	95.35	sodium/hydrogen exchanger 8 isoform X1 OS=Elaeis guineensis var. tenera OX=51953...	[more]
A0A5B7A356	2.0e-14	95.35	Cyclic nucleotide-binding domain-containing protein OS=Davidia involucrata OX=16...	[more]

BLAST of Lsi09G007260 vs. NCBI nr


Match Name	E-value	Identity	Description
EHA8589907.1	6.3e-15	95.45	putative Sodium/hydrogen exchanger 7 [Cocos nucifera]	[more]
CAN66617.1	1.1e-14	78.18	hypothetical protein VITISV_015941 [Vitis vinifera]	[more]
XP_008798100.1	2.4e-14	81.13	sodium/hydrogen exchanger 8 isoform X1 [Phoenix dactylifera]	[more]
KAF3430996.1	2.4e-14	81.13	hypothetical protein FNV43_RR25726 [Rhamnella rubrinervis]	[more]
XP_026662993.1	2.4e-14	81.13	sodium/hydrogen exchanger 7 isoform X2 [Phoenix dactylifera]	[more]

BLAST of Lsi09G007260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01980.1	3.9e-15	71.70	sodium proton exchanger, putative (NHX7) (SOS1)	[more]
AT1G14660.1	9.7e-14	75.56	Na+/H+ exchanger 8	[more]
AT1G14660.2	9.7e-14	75.56	Na+/H+ exchanger 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10110:SF86	SODIUM/HYDROGEN EXCHANGER 7	coord: 8..68
IPR018422	Cation/H+ exchanger, CPA1 family	PANTHER	PTHR10110	SODIUM/HYDROGEN EXCHANGER	coord: 8..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G007260.1	Lsi09G007260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0071805	potassium ion transmembrane transport
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0051453	regulation of intracellular pH
biological_process	GO:0098719	sodium ion import across plasma membrane
biological_process	GO:0006812	cation transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015386	potassium:proton antiporter activity
molecular_function	GO:0015385	sodium:proton antiporter activity
molecular_function	GO:0015299	solute:proton antiporter activity