Lsi09G007090 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTTTCCATTCTGATTCTGCAACTTTACACCATATCTTCCATCCCACCACAACGCCTCTTTTCTCTCTTCTCTCTCTCTCTCTCTCTCTCCATTTATTTCCTCTGTCGAATCTTACCCACTCCATAACCAGTAAAGGCTATGGAAACCCACCTCCACCTCCCTCTTCTCTGGCCCTTCTCGCTTCTACACTCTGCTTCTCACTGCCGCTGCCACAGACTTCAACGCACAGATTAGCCCTTAAGGGCACTCCAGATTCTTCAACCCCATATGTATGTCACCTCTAAATTTCAACCCCCCTTTTCTTTTTTCTTCTGTTTTTGCCTGATTTCAATGTTGCCCCACTTCCTTGATTCTGCTCTGCTTACTTTGTGGTGTTTTTGTTTATGATGATGAGATGAAATCCCTGTCTTTCTGGGTAATGATGATGATTAATCCCTTGGGAGCGGTTTTTTTGTTTGTTACATAGAATTGTTTCTGGGTTTTCCCCTTTTGCATTACTGGGACTGCTGAGGTTAGTGATTGTGTGTTTTTCTCTGCTTCCATGGTACTTTTTGTTGTGGCCTTGTGCTTGCTCAGTTTTATGTGAGCTGTTTTTAGTATGCGAGTTTATGGTTGATGTGTTAGTTTAGAGTATAAAAAGGAAGTTACTATAAATCTAGGTTTATGTAGAGATTTGTAAATTTGTAGTTTGGGATAAACAAATACATATACGCATCCCAAGTTTGGCTTCTTGATCTCAAGTTATTGGAACTTAATCCCTGAATCAAAGACTGGTTGAGTTTATTTCTGGCTCCATACCTATTTATTGTTCTTCATTAGTTCAAATTCAAAGGTATTTAGAGTAGAAAGACTGCAGAAGTGTTGAGACTTGTGGCTTTTACATGGATCCATGGCAAAAGGCAGATCGAGTATTTGATTTCTTTCCTACACAAAAAGGAAAAAAATAACGATAAACTTGTCTATATTATATATTAGTATAAACTCTTTTAGATTGAGGGGTGATTTAACATGTCTTTAAAGCTTGAGGTCCATAATTCTAAACTACTTCTGTATCGTTTCCTTCCCATTTCTTTTGAGTAGTTCATATATTGAGCCTCTTAAATCCAATTGTTTCCAAGTTGACATGTGAGAGGAAATGTTGGATGTACCAAATGATTAAATTTAAGAAAAAAATACACGTTTTTTGTATCCCTATACTTAACTCAGTGAGTCCATGTTGACATTAAATTTTAAATTTCATCAAATTTAGCCTTGAACTTGATTACATGATGAAAGTGATACTCTCGATTAGTAAAGATTTCTTTCTTCTTTTTCTTCTTATAAGATTTAGACTATCTATAGGTGTTCTTGTGACTAGATGAGATTGTTTTTGTGTATATTTATCTTGTGGTTGTGTTAGATACTTTGTTTGGGTTTGGATATTTTGTTGTTGACCTTGCGCACTTCTACTTGATTTTCTGGTAAGGTACGACTTACAAGTATCTTTTTATTTTTTGGTGGGGGTGTTCAGCATCTTGATGGTTTGATTTTGAGTGTTTTGTAAGCTAAATCTTGTTTGGTTTATTGATTGGTTCATAGACAAGGTTCTTTAGTTTTGAGGATGTGTTAATTTCACCTCTAAATCAAGTTAGAGGGTTTTGGTTCAAGCACAATTATAAACATAAAAATTGACCCACTAAGCATAGGAGGTAATGTGAAACTATCTTCTAAATATATCCTATCTGATCAACTTAAGCCTTTGGACCTATTGGTAATTTTGTAAATGTTTCATTATCATTTAAGATATAAAGAAATAAGTTGCTTCAAAAATGGAAGATATGAATAGCATTGGCACTTCTTTACATTTTCTTTCCCAATATTATGCAATGCAGGTCCAGAGCCTGATAACTGGAAGCAACATTAACTTATATGATTGTTTTTGTGATTCTGAATACAGAAGGAAAAAGAGTGATTCTTTGTTTTGGAAGCCTTTGGTTCTTTACTTTCAGCACTATTCATCCAAATATGGAAGCTTTAAATTTAAACCTTGAAGCTGCAACAGATTCAGAGCCCAGCAGCAGTCAAGAAGCAAATCCTGATCACTCCAATACTGCAACTACCACTTCTTCCTGTCCACCAAGCTCGAGTAAAGTAGTCGTTGCCGATACAATGCCCATTTCACTTGACTTGACACTTCAGTTTAACTCCAAGTATATTGAGTCGAAGGACGATGGCGAGATTCATGGGGAAACAAGTAGTAACAAATCATCATCTTCAACAATGCCAAGAGTTTTCAGTTGCAATTACTGTCGACGCAAGTTCTTTAGCTCACAGGCACTCGGTGGGCATCAAAATGCACACAAAAGAGAGAGGACAATGGCTAAACGTGTAACTCGGATGGGAATGTTCTTCGACAGATACGGTAGCTTGGCTTCTCTGCCACTTCATGGCTCATCTCTTAGATCCCTTGGCATTGAAGCTCATGGTGCTCTACACCAAACAGTTCTAGCTTCAGATCAGAGGCCTTATCCTGGTAGGACTGTTGGAGCAAAGTTCGAGCAGAGCTCTTTTGGGTTCCCGACATTCATCGAGGACTATGATGACGATGTGGGGATGTTTTGGCCAGGAAGTTTCAGGCAGGTGGCTGCCAAAGTTGATAGCACCTTAGGTCCTTTGGGAACCACAGTTCAAAATTCAAATCCAGAGTTTGGGAAAACAATGCCTCCACCAAGAACAGAATCATCATCACCTGATCTCACTTTGAGGCTTTAGTAAGTAATTTTCTCTTTGATGCCTTCTCCTTAATGTATCAACTTTTGTAAAGTGGGATGATGTCTGCCATTGTCTGCCATCTTTTAGTGGCTCTAAGCTTATGAATTATTGAATAAATCTTCATTTTTTTTCCTCTCATTACCTTTAATATCCAAGTCTAAAATAAGCTTTTTG ATGGATTCAGAGCCCAGCAGCAGTCAAGAAGCAAATCCTGATCACTCCAATACTGCAACTACCACTTCTTCCTGTCCACCAAGCTCGAGTAAAGTAGTCGTTGCCGATACAATGCCCATTTCACTTGACTTGACACTTCAGTTTAACTCCAAGTATATTGAGTCGAAGGACGATGGCGAGATTCATGGGGAAACAAGTAGTAACAAATCATCATCTTCAACAATGCCAAGAGTTTTCAGTTGCAATTACTGTCGACGCAAGTTCTTTAGCTCACAGGCACTCGGTGGGCATCAAAATGCACACAAAAGAGAGAGGACAATGGCTAAACGTGTAACTCGGATGGGAATGTTCTTCGACAGATACGGTAGCTTGGCTTCTCTGCCACTTCATGGCTCATCTCTTAGATCCCTTGGCATTGAAGCTCATGGTGCTCTACACCAAACAGTTCTAGCTTCAGATCAGAGGCCTTATCCTGGTAGGACTGTTGGAGCAAAGTTCGAGCAGAGCTCTTTTGGGTTCCCGACATTCATCGAGGACTATGATGACGATGTGGGGATGTTTTGGCCAGGAAGTTTCAGGCAGGTGGCTGCCAAAGTTGATAGCACCTTAGGTCCTTTGGGAACCACAGTTCAAAATTCAAATCCAGAGTTTGGGAAAACAATGCCTCCACCAAGAACAGAATCATCATCACCTGATCTCACTTTGAGGCTTTAGTAAGTAATTTTCTCTTTGATGCCTTCTCCTTAATGTATCAACTTTTGTAAAGTGGGATGATGTCTGCCATTGTCTGCCATCTTTTAGTGGCTCTAAGCTTATGAATTATTGAATAAATCTTCATTTTTTTTCCTCTCATTACCTTTAATATCCAAGTCTAAAATAAGCTTTTTG ATGGATTCAGAGCCCAGCAGCAGTCAAGAAGCAAATCCTGATCACTCCAATACTGCAACTACCACTTCTTCCTGTCCACCAAGCTCGAGTAAAGTAGTCGTTGCCGATACAATGCCCATTTCACTTGACTTGACACTTCAGTTTAACTCCAAGTATATTGAGTCGAAGGACGATGGCGAGATTCATGGGGAAACAAGTAGTAACAAATCATCATCTTCAACAATGCCAAGAGTTTTCAGTTGCAATTACTGTCGACGCAAGTTCTTTAGCTCACAGGCACTCGGTGGGCATCAAAATGCACACAAAAGAGAGAGGACAATGGCTAAACGTGTAACTCGGATGGGAATGTTCTTCGACAGATACGGTAGCTTGGCTTCTCTGCCACTTCATGGCTCATCTCTTAGATCCCTTGGCATTGAAGCTCATGGTGCTCTACACCAAACAGTTCTAGCTTCAGATCAGAGGCCTTATCCTGGTAGGACTGTTGGAGCAAAGTTCGAGCAGAGCTCTTTTGGGTTCCCGACATTCATCGAGGACTATGATGACGATGTGGGGATGTTTTGGCCAGGAAGTTTCAGGCAGGTGGCTGCCAAAGTTGATAGCACCTTAGGTCCTTTGGGAACCACAGTTCAAAATTCAAATCCAGAGTTTGGGAAAACAATGCCTCCACCAAGAACAGAATCATCATCACCTGATCTCACTTTGAGGCTTTAG MDSEPSSSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEIHGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYGSLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL Homology
BLAST of Lsi09G007090 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2) HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28 Identity = 98/251 (39.04%), Postives = 122/251 (48.61%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 6.1e-25 Identity = 81/192 (42.19%), Postives = 103/192 (53.65%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17 Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 2.1e-17 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12 Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy TrEMBL
Match: A0A0A0KPA2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G548160 PE=4 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 2.1e-116 Identity = 219/237 (92.41%), Postives = 227/237 (95.78%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy TrEMBL
Match: A0A5D3E1W6 (Zinc finger protein 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold857G00040 PE=4 SV=1) HSP 1 Score: 426.8 bits (1096), Expect = 6.0e-116 Identity = 217/237 (91.56%), Postives = 227/237 (95.78%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy TrEMBL
Match: A0A1S3CTQ8 (zinc finger protein 7-like OS=Cucumis melo OX=3656 GN=LOC103504366 PE=4 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 5.1e-115 Identity = 216/237 (91.14%), Postives = 226/237 (95.36%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy TrEMBL
Match: A0A6J1JQ26 (zinc finger protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487865 PE=4 SV=1) HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106 Identity = 203/239 (84.94%), Postives = 219/239 (91.63%), Query Frame = 0
BLAST of Lsi09G007090 vs. ExPASy TrEMBL
Match: A0A6J1E2E8 (zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430156 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 7.3e-106 Identity = 204/241 (84.65%), Postives = 220/241 (91.29%), Query Frame = 0
BLAST of Lsi09G007090 vs. NCBI nr
Match: XP_038875240.1 (zinc finger protein 4-like [Benincasa hispida] >XP_038875241.1 zinc finger protein 4-like [Benincasa hispida]) HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116 Identity = 222/238 (93.28%), Postives = 228/238 (95.80%), Query Frame = 0
BLAST of Lsi09G007090 vs. NCBI nr
Match: XP_004142819.2 (zinc finger protein 7 [Cucumis sativus] >XP_004142820.2 zinc finger protein 7 [Cucumis sativus] >XP_031741931.1 zinc finger protein 7 [Cucumis sativus] >KAE8648580.1 hypothetical protein Csa_008564 [Cucumis sativus]) HSP 1 Score: 428.3 bits (1100), Expect = 4.2e-116 Identity = 219/237 (92.41%), Postives = 227/237 (95.78%), Query Frame = 0
BLAST of Lsi09G007090 vs. NCBI nr
Match: KAA0046429.1 (zinc finger protein 7-like [Cucumis melo var. makuwa] >TYK29778.1 zinc finger protein 7-like [Cucumis melo var. makuwa]) HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115 Identity = 217/237 (91.56%), Postives = 227/237 (95.78%), Query Frame = 0
BLAST of Lsi09G007090 vs. NCBI nr
Match: XP_008466973.1 (PREDICTED: zinc finger protein 7-like [Cucumis melo] >XP_008466976.1 PREDICTED: zinc finger protein 7-like [Cucumis melo]) HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114 Identity = 216/237 (91.14%), Postives = 226/237 (95.36%), Query Frame = 0
BLAST of Lsi09G007090 vs. NCBI nr
Match: XP_022991196.1 (zinc finger protein 7-like [Cucurbita maxima]) HSP 1 Score: 395.6 bits (1015), Expect = 3.0e-106 Identity = 203/239 (84.94%), Postives = 219/239 (91.63%), Query Frame = 0
BLAST of Lsi09G007090 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 ) HSP 1 Score: 128.3 bits (321), Expect = 8.4e-30 Identity = 98/251 (39.04%), Postives = 122/251 (48.61%), Query Frame = 0
BLAST of Lsi09G007090 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 ) HSP 1 Score: 115.9 bits (289), Expect = 4.3e-26 Identity = 81/192 (42.19%), Postives = 103/192 (53.65%), Query Frame = 0
BLAST of Lsi09G007090 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 ) HSP 1 Score: 91.7 bits (226), Expect = 8.8e-19 Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Lsi09G007090 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 ) HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Lsi09G007090 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 88.2 bits (217), Expect = 9.7e-18 Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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