Lsi09G006950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G006950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB3 domain-containing protein At2g31420-like
Locationchr09: 7875889 .. 7876491 (-)
RNA-Seq ExpressionLsi09G006950
SyntenyLsi09G006950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATTGCATACTCTGTTCCCGATGTTGAAAGCTTCTGCAATTGCGAACTCGAAAGATATAAAAACACCCACAAAAGGAAGAACCCTCCGACTACTACTACTACTACTAAGAAACCGGCGAGGAAGAAGAGGGCAAAGCAAAGCGAGTTTCCGTCGATTCCTGAGATGCCGGTGGCGATGAGAGAACGAATCGTGGAGATGGGTGGACATGAAATTAACCTGGTGATTCAAAAGCAACTTCAAGATACAGATCTAAACAAGAATCACGGGCGTTTGTCTCTTCCTGCAAAGAAATTGCTGTTTGATTTTGCAACAGAAGAGGAGAGGAAGTTGCTGAGCGAACAAGAAAACAAGAACAAAAAAGGGATGAATGTAGTGAGAATGGCTGATGTTTTTGAAGAAAGAAGAATTTGTTTGAAGAAGTGGAAGATTGGAAATGGGGATGTATACTGTTTGATGACACAGTGGAATACGTTTGTGGAAGAAAGGAGATTGAAAAGTGGAGACCATATTCAACTGTGGAGCTTCAGAAAAGATGATGAAATTGAGGGTTGTTCTGGTCTCTGTTTTGCAATGGTGAAGCTAATTCATGGGGTGTGA

mRNA sequence

ATGGCCATTGCATACTCTGTTCCCGATGTTGAAAGCTTCTGCAATTGCGAACTCGAAAGATATAAAAACACCCACAAAAGGAAGAACCCTCCGACTACTACTACTACTACTAAGAAACCGGCGAGGAAGAAGAGGGCAAAGCAAAGCGAGTTTCCGTCGATTCCTGAGATGCCGGTGGCGATGAGAGAACGAATCGTGGAGATGGGTGGACATGAAATTAACCTGGTGATTCAAAAGCAACTTCAAGATACAGATCTAAACAAGAATCACGGGCGTTTGTCTCTTCCTGCAAAGAAATTGCTGTTTGATTTTGCAACAGAAGAGGAGAGGAAGTTGCTGAGCGAACAAGAAAACAAGAACAAAAAAGGGATGAATGTAGTGAGAATGGCTGATGTTTTTGAAGAAAGAAGAATTTGTTTGAAGAAGTGGAAGATTGGAAATGGGGATGTATACTGTTTGATGACACAGTGGAATACGTTTGTGGAAGAAAGGAGATTGAAAAGTGGAGACCATATTCAACTGTGGAGCTTCAGAAAAGATGATGAAATTGAGGGTTGTTCTGGTCTCTGTTTTGCAATGGTGAAGCTAATTCATGGGGTGTGA

Coding sequence (CDS)

ATGGCCATTGCATACTCTGTTCCCGATGTTGAAAGCTTCTGCAATTGCGAACTCGAAAGATATAAAAACACCCACAAAAGGAAGAACCCTCCGACTACTACTACTACTACTAAGAAACCGGCGAGGAAGAAGAGGGCAAAGCAAAGCGAGTTTCCGTCGATTCCTGAGATGCCGGTGGCGATGAGAGAACGAATCGTGGAGATGGGTGGACATGAAATTAACCTGGTGATTCAAAAGCAACTTCAAGATACAGATCTAAACAAGAATCACGGGCGTTTGTCTCTTCCTGCAAAGAAATTGCTGTTTGATTTTGCAACAGAAGAGGAGAGGAAGTTGCTGAGCGAACAAGAAAACAAGAACAAAAAAGGGATGAATGTAGTGAGAATGGCTGATGTTTTTGAAGAAAGAAGAATTTGTTTGAAGAAGTGGAAGATTGGAAATGGGGATGTATACTGTTTGATGACACAGTGGAATACGTTTGTGGAAGAAAGGAGATTGAAAAGTGGAGACCATATTCAACTGTGGAGCTTCAGAAAAGATGATGAAATTGAGGGTTGTTCTGGTCTCTGTTTTGCAATGGTGAAGCTAATTCATGGGGTGTGA

Protein sequence

MAIAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMRERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKKGMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAMVKLIHGV
Homology
BLAST of Lsi09G006950 vs. ExPASy Swiss-Prot
Match: Q5RM09 (B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana OX=3702 GN=At1g05920 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-11
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 0

Query: 42  RKKRAKQSEF--PSIPEMPVAMRERIVEM-GGHEINLVIQKQLQDTDLNKNHGRLSLPAK 101
           R+K+    EF  P  P+ P  + + +  M G  +  L+I+K L   D++    RLS+P  
Sbjct: 146 RRKKTTSYEFVPPKHPQEPQWLLQVMSRMNGAGDPKLIIEKNLDSNDVDPRQNRLSIPIN 205

Query: 102 KLL-FDFATEEERKLLSEQENKNKKGMNVVRMADVFEERRICLKKWKIG---------NG 161
            ++  DF T +E +L+ E E  N+  M V   A + ++R    KKW +G         +G
Sbjct: 206 TVIQNDFLTLDESRLIDEDEITNEGNMGVA--AFLVDQR---TKKWNMGFKQWFMTTDSG 265

Query: 162 DVY---CLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAMV 195
             Y    L  +W+  VE   LK GD I LWSFR +D       LCFA+V
Sbjct: 266 SSYWSFVLRGEWSNVVETNGLKEGDKISLWSFRSNDI------LCFALV 303

BLAST of Lsi09G006950 vs. ExPASy Swiss-Prot
Match: Q9FFX2 (B3 domain-containing protein At5g38490 OS=Arabidopsis thaliana OX=3702 GN=At5g38490 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 0

Query: 38  KKPARKKRAKQSEFPSI-PEMP--VAMRERIVEMGGHEINLVIQKQLQDTDLNKNHGRLS 97
           +K  + K+ K S  P +  EMP  +    R +        L+ ++ L  +D+N N  RL 
Sbjct: 198 RKSGKVKKVKVSPLPRLCTEMPEWIFQVMRYMNADAETPRLIFERTLFKSDVNSNLSRLL 257

Query: 98  LPAKKLL-FDFATEEERKLLSEQENKNKK-----GMNVVRMADVFEERRICLKKWKI--- 157
           +P +KL+  DF T  E + + + E+ +++     G+  V +   F++  +  K W +   
Sbjct: 258 MPFQKLIRNDFLTPAECRAMQKDEDNDEEDDENIGVGTVLVNQRFQKWGLRFKIWAMEKD 317

Query: 158 -GNGDV-YCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSG-LCFAM 194
            G+G + Y L   WN  V+   LK GD I LW+FR       C G LCFA+
Sbjct: 318 SGHGTLNYTLNWGWNDVVKSSSLKVGDKISLWTFR-------CRGVLCFAL 361

BLAST of Lsi09G006950 vs. ExPASy Swiss-Prot
Match: F4I8U3 (Putative B3 domain-containing protein At1g05615 OS=Arabidopsis thaliana OX=3702 GN=At1g05615 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-07
Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 102 FDFATEEERKLLSEQENKNK-KGMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTF 161
           F+F   +E++++ E  NK + +G++V+ +     E  + L++W +G   +Y L++     
Sbjct: 77  FEFLNPDEKRIIEEHANKEREEGVDVILVNFDRREYMLNLRRWNMGTSPLYILVSGRYNV 136

Query: 162 VEERRLKSGDHIQLWSFRKDDEI 184
           V+  RLK G+ I++WSF  DD++
Sbjct: 137 VKGCRLKEGNEIRIWSFHFDDQL 159

BLAST of Lsi09G006950 vs. ExPASy Swiss-Prot
Match: Q9FFX1 (B3 domain-containing protein At5g38500 OS=Arabidopsis thaliana OX=3702 GN=At5g38500 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-06
Identity = 55/217 (25.35%), Postives = 94/217 (43.32%), Query Frame = 0

Query: 23  NTHKRKNPPTTTTTTKKPARKKRA---------KQSEFPSIPEMPVAMRERIVEMGGH-- 82
           N + + + P++  T    +RK+RA         K+ +   +P +     E + +  GH  
Sbjct: 199 NPNYQSSSPSSCLTENDTSRKRRAVEQRKSGKVKKVKVSPLPRLSTETPEWVFQAMGHMN 258

Query: 83  ----EINLVIQKQLQDTDLNKNHGRLSLPAKKLL-FDFATEEERKLLSEQENKNKK---- 142
                  L+ ++ L  +D+N N  RL +P +KL+  DF T EE + + E ++K+ +    
Sbjct: 259 ADAETPKLIFERTLFKSDVNSNLSRLLIPFQKLIRNDFLTPEECRAMQEDKDKDDEDISV 318

Query: 143 --------------------GMNVVRMADVFEERRICLKKWKI----GNGDV-YCLMTQW 194
                               G   + +   F+   +  K W +    G+G + Y L   W
Sbjct: 319 GTILVCQAKQEDEDKDDEDIGAGTILVNQRFKMWGLRFKIWGMEKDSGHGTLNYILNWDW 378

BLAST of Lsi09G006950 vs. ExPASy Swiss-Prot
Match: Q9SJ98 (B3 domain-containing protein At2g24670 OS=Arabidopsis thaliana OX=3702 GN=At2g24670 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-06
Identity = 49/183 (26.78%), Postives = 85/183 (46.45%), Query Frame = 0

Query: 20  RYKNTH--KRKNPPTTTTTTKKPARKKRAKQSEF--PSIPEMPVAMRERIVEMGGHEINL 79
           R +N H     +PP     +KK  R   A  S+   P+   +   MR +           
Sbjct: 72  RSRNRHDLPPMSPPMEQRKSKKAKRSTDASSSKTREPTPGWLISLMRSKNGGDVEDNSKK 131

Query: 80  VIQKQLQDTDLNKNHGRLSLPAKKLL-FDFATEEERKLLSEQENK-NKKGMNVVRMADVF 139
           +I K+L  TD++ +  RLS+P  +++  +F   EE++ + E  N+  K+G++ + +    
Sbjct: 132 IIDKELFQTDVDPHQSRLSIPVSQIVELEFLNHEEKRAIEEDANRVRKEGVDAILVDSHL 191

Query: 140 EERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAM 197
            E  + L+   +    +Y L+  WN  V +  L+   +I+LWSF  DD       L FA+
Sbjct: 192 REFPVNLRLRDMRGILLYNLVAGWNQVVTDCLLEENTNIRLWSFHADDT------LYFAL 248

BLAST of Lsi09G006950 vs. ExPASy TrEMBL
Match: A0A5D3CT22 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00310 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.0e-63
Identity = 135/197 (68.53%), Postives = 152/197 (77.16%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVP+VE       ++   THKRKNPP T T  KK  RKK+ KQSE+PSIPEMP  MR
Sbjct: 11  MANSVPNVEP------QQINKTHKRKNPPRTNTAIKKQRRKKKVKQSEYPSIPEMPTTMR 70

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI EMGG+EINLVIQKQL DTDLNKN GRLS+P KKL FDF TEEER LLS+QENKNKK
Sbjct: 71  DRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLLSQQENKNKK 130

Query: 123 GMNVVRMADVFEE-RRICLKKWKI--GNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRK 182
           G+NV+ M ++ E+ R ICLKKWKI  GNGDVYCLMTQWN FVEE  LKSG HIQLW FRK
Sbjct: 131 GINVMIMNNMVEDIRSICLKKWKIGSGNGDVYCLMTQWNAFVEETGLKSGQHIQLWCFRK 190

Query: 183 DDEIEGCSGLCFAMVKL 197
           D E E    LCFA+V+L
Sbjct: 191 DYEFEP-PRLCFAVVRL 200

BLAST of Lsi09G006950 vs. ExPASy TrEMBL
Match: A0A1S3CSS4 (putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC103504467 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.9e-63
Identity = 134/197 (68.02%), Postives = 152/197 (77.16%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVP+VE       ++   THKRKNPP T T  KK  RKK+ +QSE+PSIPEMP  MR
Sbjct: 57  MANSVPNVEP------QQINKTHKRKNPPRTNTAIKKQRRKKKVEQSEYPSIPEMPTTMR 116

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI EMGG+EINLVIQKQL DTDLNKN GRLS+P KKL FDF TEEER LLS+QENKNKK
Sbjct: 117 DRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLLSQQENKNKK 176

Query: 123 GMNVVRMADVFEE-RRICLKKWKI--GNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRK 182
           G+NV+ M ++ E+ R ICLKKWKI  GNGDVYCLMTQWN FVEE  LKSG HIQLW FRK
Sbjct: 177 GINVMIMNNMVEDIRSICLKKWKIGSGNGDVYCLMTQWNAFVEETGLKSGQHIQLWCFRK 236

Query: 183 DDEIEGCSGLCFAMVKL 197
           D E E    LCFA+V+L
Sbjct: 237 DYEFEP-PRLCFAVVRL 246

BLAST of Lsi09G006950 vs. ExPASy TrEMBL
Match: A0A5A7TS79 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001480 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 5.1e-60
Identity = 123/194 (63.40%), Postives = 147/194 (75.77%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVPDV+       ++   THKRKNPP  T  +    +K+R K  +   IP MPV MR
Sbjct: 62  LANSVPDVQR------QKLNKTHKRKNPPIPTEASTSKTKKQRKKNVDQSEIPSMPVTMR 121

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI+EMGG+EI LVIQKQL DTDLNKNHGRLS+  K+L FDFATEEE KLLSEQENKNKK
Sbjct: 122 DRILEMGGYEIRLVIQKQLTDTDLNKNHGRLSMNKKQLSFDFATEEEGKLLSEQENKNKK 181

Query: 123 GMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDE 182
           G+NV+ + DV EER +CLKKWKIGNG+VYCLMT+WN  VE+R  +SG+ IQ+WSFRKDDE
Sbjct: 182 GINVMILDDVLEERMLCLKKWKIGNGEVYCLMTKWNLMVEKRGFESGEEIQVWSFRKDDE 241

Query: 183 IEGCSGLCFAMVKL 197
            E    LCFA+VKL
Sbjct: 242 YE-AHRLCFALVKL 248

BLAST of Lsi09G006950 vs. ExPASy TrEMBL
Match: A0A5D3E3Y5 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00650 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.7e-60
Identity = 124/194 (63.92%), Postives = 146/194 (75.26%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVPDV+       ++   THKRKNPP  T  +    +K+R K  +   IP MPV MR
Sbjct: 62  LANSVPDVQR------QKLNKTHKRKNPPIPTEASTSKTKKQRKKNVDQSEIPSMPVTMR 121

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI+EMGG+EI LVIQKQL DTDLNK HGRLS+  K+L FDFATEEE KLLSEQENKNKK
Sbjct: 122 DRILEMGGYEIRLVIQKQLTDTDLNKIHGRLSMNKKQLSFDFATEEEGKLLSEQENKNKK 181

Query: 123 GMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDE 182
           G+NV+ + DV EER +CLKKWKIGNG+VYCLMT+WN  VE+R  KSG+ IQLWSFRKDDE
Sbjct: 182 GINVMILDDVLEERMLCLKKWKIGNGEVYCLMTKWNLMVEKRGFKSGEEIQLWSFRKDDE 241

Query: 183 IEGCSGLCFAMVKL 197
            E    LCFA+VKL
Sbjct: 242 YE-AHRLCFALVKL 248

BLAST of Lsi09G006950 vs. ExPASy TrEMBL
Match: A0A5A7TWX2 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00300 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.3e-59
Identity = 121/194 (62.37%), Postives = 147/194 (75.77%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVPDV+       ++   THKRKNPP  T  +    +K+R K  +   IP MPV MR
Sbjct: 62  LANSVPDVQR------QKLNKTHKRKNPPIPTEASTSKTKKQRKKNVDQSEIPSMPVTMR 121

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI+EMGG+EI LVIQKQL DTDLNKNHGRLS+  K+L FDFATEEE +LLSEQENKNKK
Sbjct: 122 DRILEMGGYEIRLVIQKQLTDTDLNKNHGRLSMNKKQLSFDFATEEESELLSEQENKNKK 181

Query: 123 GMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDE 182
           G+NV+ + DV EER +CLKKWKIG+G+VYCLMT+WN  VE+R  +SG+ IQ+WSFRKDDE
Sbjct: 182 GINVMILDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEKRGFESGEEIQVWSFRKDDE 241

Query: 183 IEGCSGLCFAMVKL 197
            E    LCFA+VKL
Sbjct: 242 YE-AHRLCFALVKL 248

BLAST of Lsi09G006950 vs. NCBI nr
Match: XP_038875653.1 (B3 domain-containing protein At1g05920-like [Benincasa hispida])

HSP 1 Score: 334.0 bits (855), Expect = 9.2e-88
Identity = 167/199 (83.92%), Postives = 179/199 (89.95%), Query Frame = 0

Query: 1   MAIAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVA 60
           MAIA SV DVESFCNCEL++Y+NTHKRKNPP TT  TKKP RKKRA+QS+FPSIPEMP A
Sbjct: 49  MAIANSVSDVESFCNCELKKYENTHKRKNPP-TTAATKKPPRKKRARQSKFPSIPEMPAA 108

Query: 61  MRERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKN 120
           MR+RIVEMGG+EINLVIQKQLQDTDLNKN GRLSLP KKLLFDFATEEER+LLS+QENKN
Sbjct: 109 MRDRIVEMGGYEINLVIQKQLQDTDLNKNLGRLSLPQKKLLFDFATEEERRLLSQQENKN 168

Query: 121 KKGMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKD 180
           KKG+NVV M  V EER ICLKKWKIG+GDVYCLMTQWN FV+ER LKSGDHIQLWSFRKD
Sbjct: 169 KKGLNVVIMDHVLEERNICLKKWKIGSGDVYCLMTQWNAFVKERGLKSGDHIQLWSFRKD 228

Query: 181 DEIEGCSGLCFAMVKLIHG 200
           DE EG   LCFAMVKLIHG
Sbjct: 229 DENEGGFRLCFAMVKLIHG 246

BLAST of Lsi09G006950 vs. NCBI nr
Match: XP_038876237.1 (putative B3 domain-containing protein At3g24850 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-66
Identity = 135/175 (77.14%), Postives = 150/175 (85.71%), Query Frame = 0

Query: 23  NTHKRKNPPT-TTTTTKKPARKKRAKQSEFPSIPEMPVAMRERIVEMGGHEINLVIQKQL 82
           NTHKRK PPT T TT  K  RKK+AKQS++P I EMPVAMR+RIVEMGG+ INLVIQKQL
Sbjct: 73  NTHKRKKPPTPTPTTMTKKQRKKKAKQSKYPWITEMPVAMRDRIVEMGGYGINLVIQKQL 132

Query: 83  QDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKKGMNVVRMADVFEERRICLK 142
           QDTDLNKN GRLSLPA+KLLFDF TE+E+ LLS++ENK KKGMNV+ M DV EERRICLK
Sbjct: 133 QDTDLNKNQGRLSLPAEKLLFDFTTEDEKILLSQRENKKKKGMNVLIMDDVLEERRICLK 192

Query: 143 KWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAMVKL 197
            WKIG+GDVYCLMTQWN+FVEE  LKSG+HIQ+W FRKDDE E  S LCFAMVKL
Sbjct: 193 MWKIGSGDVYCLMTQWNSFVEETGLKSGEHIQIWCFRKDDEFE-ASRLCFAMVKL 246

BLAST of Lsi09G006950 vs. NCBI nr
Match: XP_038907053.1 (B3 domain-containing protein At2g31420-like [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-64
Identity = 132/178 (74.16%), Postives = 149/178 (83.71%), Query Frame = 0

Query: 19  ERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMRERIVEMGGHEINLVIQ 78
           E+  NTHKRKNP T  T TKK  RKK+AKQS++PSIPEMP A+R+RIVEMGG+EI LVIQ
Sbjct: 69  EKISNTHKRKNPLTPKTATKK-QRKKKAKQSKYPSIPEMPEALRDRIVEMGGYEIRLVIQ 128

Query: 79  KQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKKGMNVVRMADVFEERRI 138
           KQL+DTDL+KNHGRLS+P KKLLFDF TEEERKLLSE EN+NKKG+N V + DV EER I
Sbjct: 129 KQLEDTDLSKNHGRLSMPIKKLLFDFTTEEERKLLSEVENQNKKGINTVIIDDV-EERMI 188

Query: 139 CLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAMVKL 197
           CLKKWKIG+GDVYCL TQWN+ VEE  LK G HIQ+WSFRKDDE E    +CFAMVKL
Sbjct: 189 CLKKWKIGSGDVYCLTTQWNSLVEETGLKVGQHIQIWSFRKDDENEAYH-VCFAMVKL 243

BLAST of Lsi09G006950 vs. NCBI nr
Match: KAA0046406.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK14655.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-63
Identity = 135/197 (68.53%), Postives = 152/197 (77.16%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVP+VE       ++   THKRKNPP T T  KK  RKK+ KQSE+PSIPEMP  MR
Sbjct: 11  MANSVPNVEP------QQINKTHKRKNPPRTNTAIKKQRRKKKVKQSEYPSIPEMPTTMR 70

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI EMGG+EINLVIQKQL DTDLNKN GRLS+P KKL FDF TEEER LLS+QENKNKK
Sbjct: 71  DRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLLSQQENKNKK 130

Query: 123 GMNVVRMADVFEE-RRICLKKWKI--GNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRK 182
           G+NV+ M ++ E+ R ICLKKWKI  GNGDVYCLMTQWN FVEE  LKSG HIQLW FRK
Sbjct: 131 GINVMIMNNMVEDIRSICLKKWKIGSGNGDVYCLMTQWNAFVEETGLKSGQHIQLWCFRK 190

Query: 183 DDEIEGCSGLCFAMVKL 197
           D E E    LCFA+V+L
Sbjct: 191 DYEFEP-PRLCFAVVRL 200

BLAST of Lsi09G006950 vs. NCBI nr
Match: XP_008467039.1 (PREDICTED: putative B3 domain-containing protein At3g24850 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-63
Identity = 134/197 (68.02%), Postives = 152/197 (77.16%), Query Frame = 0

Query: 3   IAYSVPDVESFCNCELERYKNTHKRKNPPTTTTTTKKPARKKRAKQSEFPSIPEMPVAMR 62
           +A SVP+VE       ++   THKRKNPP T T  KK  RKK+ +QSE+PSIPEMP  MR
Sbjct: 57  MANSVPNVEP------QQINKTHKRKNPPRTNTAIKKQRRKKKVEQSEYPSIPEMPTTMR 116

Query: 63  ERIVEMGGHEINLVIQKQLQDTDLNKNHGRLSLPAKKLLFDFATEEERKLLSEQENKNKK 122
           +RI EMGG+EINLVIQKQL DTDLNKN GRLS+P KKL FDF TEEER LLS+QENKNKK
Sbjct: 117 DRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLLSQQENKNKK 176

Query: 123 GMNVVRMADVFEE-RRICLKKWKI--GNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRK 182
           G+NV+ M ++ E+ R ICLKKWKI  GNGDVYCLMTQWN FVEE  LKSG HIQLW FRK
Sbjct: 177 GINVMIMNNMVEDIRSICLKKWKIGSGNGDVYCLMTQWNAFVEETGLKSGQHIQLWCFRK 236

Query: 183 DDEIEGCSGLCFAMVKL 197
           D E E    LCFA+V+L
Sbjct: 237 DYEFEP-PRLCFAVVRL 246

BLAST of Lsi09G006950 vs. TAIR 10
Match: AT1G05920.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-12
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 0

Query: 42  RKKRAKQSEF--PSIPEMPVAMRERIVEM-GGHEINLVIQKQLQDTDLNKNHGRLSLPAK 101
           R+K+    EF  P  P+ P  + + +  M G  +  L+I+K L   D++    RLS+P  
Sbjct: 146 RRKKTTSYEFVPPKHPQEPQWLLQVMSRMNGAGDPKLIIEKNLDSNDVDPRQNRLSIPIN 205

Query: 102 KLL-FDFATEEERKLLSEQENKNKKGMNVVRMADVFEERRICLKKWKIG---------NG 161
            ++  DF T +E +L+ E E  N+  M V   A + ++R    KKW +G         +G
Sbjct: 206 TVIQNDFLTLDESRLIDEDEITNEGNMGVA--AFLVDQR---TKKWNMGFKQWFMTTDSG 265

Query: 162 DVY---CLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAMV 195
             Y    L  +W+  VE   LK GD I LWSFR +D       LCFA+V
Sbjct: 266 SSYWSFVLRGEWSNVVETNGLKEGDKISLWSFRSNDI------LCFALV 303

BLAST of Lsi09G006950 vs. TAIR 10
Match: AT5G38490.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 0

Query: 38  KKPARKKRAKQSEFPSI-PEMP--VAMRERIVEMGGHEINLVIQKQLQDTDLNKNHGRLS 97
           +K  + K+ K S  P +  EMP  +    R +        L+ ++ L  +D+N N  RL 
Sbjct: 198 RKSGKVKKVKVSPLPRLCTEMPEWIFQVMRYMNADAETPRLIFERTLFKSDVNSNLSRLL 257

Query: 98  LPAKKLL-FDFATEEERKLLSEQENKNKK-----GMNVVRMADVFEERRICLKKWKI--- 157
           +P +KL+  DF T  E + + + E+ +++     G+  V +   F++  +  K W +   
Sbjct: 258 MPFQKLIRNDFLTPAECRAMQKDEDNDEEDDENIGVGTVLVNQRFQKWGLRFKIWAMEKD 317

Query: 158 -GNGDV-YCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSG-LCFAM 194
            G+G + Y L   WN  V+   LK GD I LW+FR       C G LCFA+
Sbjct: 318 SGHGTLNYTLNWGWNDVVKSSSLKVGDKISLWTFR-------CRGVLCFAL 361

BLAST of Lsi09G006950 vs. TAIR 10
Match: AT1G05615.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 55.5 bits (132), Expect = 5.9e-08
Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 102 FDFATEEERKLLSEQENKNK-KGMNVVRMADVFEERRICLKKWKIGNGDVYCLMTQWNTF 161
           F+F   +E++++ E  NK + +G++V+ +     E  + L++W +G   +Y L++     
Sbjct: 77  FEFLNPDEKRIIEEHANKEREEGVDVILVNFDRREYMLNLRRWNMGTSPLYILVSGRYNV 136

Query: 162 VEERRLKSGDHIQLWSFRKDDEI 184
           V+  RLK G+ I++WSF  DD++
Sbjct: 137 VKGCRLKEGNEIRIWSFHFDDQL 159

BLAST of Lsi09G006950 vs. TAIR 10
Match: AT5G38500.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 55/217 (25.35%), Postives = 94/217 (43.32%), Query Frame = 0

Query: 23  NTHKRKNPPTTTTTTKKPARKKRA---------KQSEFPSIPEMPVAMRERIVEMGGH-- 82
           N + + + P++  T    +RK+RA         K+ +   +P +     E + +  GH  
Sbjct: 199 NPNYQSSSPSSCLTENDTSRKRRAVEQRKSGKVKKVKVSPLPRLSTETPEWVFQAMGHMN 258

Query: 83  ----EINLVIQKQLQDTDLNKNHGRLSLPAKKLL-FDFATEEERKLLSEQENKNKK---- 142
                  L+ ++ L  +D+N N  RL +P +KL+  DF T EE + + E ++K+ +    
Sbjct: 259 ADAETPKLIFERTLFKSDVNSNLSRLLIPFQKLIRNDFLTPEECRAMQEDKDKDDEDISV 318

Query: 143 --------------------GMNVVRMADVFEERRICLKKWKI----GNGDV-YCLMTQW 194
                               G   + +   F+   +  K W +    G+G + Y L   W
Sbjct: 319 GTILVCQAKQEDEDKDDEDIGAGTILVNQRFKMWGLRFKIWGMEKDSGHGTLNYILNWDW 378

BLAST of Lsi09G006950 vs. TAIR 10
Match: AT2G24670.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-07
Identity = 49/183 (26.78%), Postives = 85/183 (46.45%), Query Frame = 0

Query: 20  RYKNTH--KRKNPPTTTTTTKKPARKKRAKQSEF--PSIPEMPVAMRERIVEMGGHEINL 79
           R +N H     +PP     +KK  R   A  S+   P+   +   MR +           
Sbjct: 72  RSRNRHDLPPMSPPMEQRKSKKAKRSTDASSSKTREPTPGWLISLMRSKNGGDVEDNSKK 131

Query: 80  VIQKQLQDTDLNKNHGRLSLPAKKLL-FDFATEEERKLLSEQENK-NKKGMNVVRMADVF 139
           +I K+L  TD++ +  RLS+P  +++  +F   EE++ + E  N+  K+G++ + +    
Sbjct: 132 IIDKELFQTDVDPHQSRLSIPVSQIVELEFLNHEEKRAIEEDANRVRKEGVDAILVDSHL 191

Query: 140 EERRICLKKWKIGNGDVYCLMTQWNTFVEERRLKSGDHIQLWSFRKDDEIEGCSGLCFAM 197
            E  + L+   +    +Y L+  WN  V +  L+   +I+LWSF  DD       L FA+
Sbjct: 192 REFPVNLRLRDMRGILLYNLVAGWNQVVTDCLLEENTNIRLWSFHADDT------LYFAL 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q5RM091.9e-1133.14B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana OX=3702 GN=At1g05... [more]
Q9FFX25.7e-0829.82B3 domain-containing protein At5g38490 OS=Arabidopsis thaliana OX=3702 GN=At5g38... [more]
F4I8U38.3e-0730.12Putative B3 domain-containing protein At1g05615 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9FFX14.1e-0625.35B3 domain-containing protein At5g38500 OS=Arabidopsis thaliana OX=3702 GN=At5g38... [more]
Q9SJ985.4e-0626.78B3 domain-containing protein At2g24670 OS=Arabidopsis thaliana OX=3702 GN=At2g24... [more]
Match NameE-valueIdentityDescription
A0A5D3CT221.0e-6368.53Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3CSS42.9e-6368.02putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7TS795.1e-6063.40Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3E3Y58.7e-6063.92Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TWX24.3e-5962.37Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
XP_038875653.19.2e-8883.92B3 domain-containing protein At1g05920-like [Benincasa hispida][more]
XP_038876237.12.0e-6677.14putative B3 domain-containing protein At3g24850 [Benincasa hispida][more]
XP_038907053.19.2e-6474.16B3 domain-containing protein At2g31420-like [Benincasa hispida][more]
KAA0046406.12.1e-6368.53putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK14655.1 put... [more]
XP_008467039.16.0e-6368.02PREDICTED: putative B3 domain-containing protein At3g24850 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G05920.11.3e-1233.14Domain of unknown function (DUF313) [more]
AT5G38490.14.1e-0929.82Domain of unknown function (DUF313) [more]
AT1G05615.15.9e-0830.12Domain of unknown function (DUF313) [more]
AT5G38500.12.9e-0725.35Domain of unknown function (DUF313) [more]
AT2G24670.13.8e-0726.78Domain of unknown function (DUF313) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 67..187
e-value: 7.9E-17
score: 63.1
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 74..179
IPR005508B3 domain-containing protein At2g31720-likePFAMPF03754DUF313coord: 59..162
e-value: 3.4E-16
score: 59.5
IPR005508B3 domain-containing protein At2g31720-likePANTHERPTHR31541B3 DOMAIN PLANT PROTEIN-RELATEDcoord: 24..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..53
NoneNo IPR availablePANTHERPTHR31541:SF25DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATEDcoord: 24..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G006950.1Lsi09G006950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding