Lsi09G006710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G006710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	HMG-Y-related protein A
Location	chr09: 7578047 .. 7579271 (+)
RNA-Seq Expression	Lsi09G006710
Synteny	Lsi09G006710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCCCCAGCCGTCAGATCTGCTCTGCCCTTCCTCCCGATCCCCTTCTCTCCCTATTTCCCCTTTTTAAATCCTCCTCTTTCCCCTTCCTCAATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCATCCTCCTCTCTCTCTCTAAAATCTAATCATCTCCGACGTCTCCTCCGCCGCCATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGGTACTTCAATTTCTCTCTCTCTCTCTCTCTCTCTGCATTTCTTAATTTTTGAGTTTTTTAATTTAATTTTGAGAAATTTCTTCCACAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAGTGGAACAAAAACAGAGGATGAGAGAGAGAAATAGAGATAGAGAGAGAGAGAAGAAGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTTTCTAATTTTAAACATTTTTAATTTTACTTCTCTTTTTTTTTTTTTAATGTGTATTACGTGGCGGGTGATGTATGGCTGTAATTCTGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTACCGGCTGTTAGGGCTTTTTTCTCTCTCTTTCCGTCTCTTTTTTCTCTCTTAAATTCTCCCGAAAAAAAAAAAGAAATTAGATTTAATTTATGGAGCCACTTTAACTCTTTTATTTTATTTTTCTTCTTTTTATTTAAT

mRNA sequence

CTATCCCCAGCCGTCAGATCTGCTCTGCCCTTCCTCCCGATCCCCTTCTCTCCCTATTTCCCCTTTTTAAATCCTCCTCTTTCCCCTTCCTCAATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCATCCTCCTCTCTCTCTCTAAAATCTAATCATCTCCGACGTCTCCTCCGCCGCCATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGAGTGGAACAAAAACAGAGGATGAGAGAGAGAAATAGAGATAGAGAGAGAGAGAAGAAGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTTTCTAATTTTAAACATTTTTAATTTTACTTCTCTTTTTTTTTTTTTAATGTGTATTACGTGGCGGGTGATGTATGGCTGTAATTCTGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTACCGGCTGTTAGGGCTTTTTTCTCTCTCTTTCCGTCTCTTTTTTCTCTCTTAAATTCTCCCGAAAAAAAAAAAGAAATTAGATTTAATTTATGGAGCCACTTTAACTCTTTTATTTTATTTTTCTTCTTTTTATTTAAT

Coding sequence (CDS)

ATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA

Protein sequence

MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC

Homology

[Close]

BLAST of Lsi09G006710 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-47
Identity = 115/184 (62.50%), Postives = 133/184 (72.28%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   N PQ      SLP YPEMI+  +E+LN+ NG +KSAI+K IE+TYG+LP A 
Sbjct: 1   MATEEV--NKPQ------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPKVKPA 180
           RP  PKDP AP   PK K T GSGRPRGRP K P+    +AP A    R RGRPPKVKP 
Sbjct: 121 RP--PKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPV 184
           +  V
Sbjct: 181 LTEV 172

[Close]

BLAST of Lsi09G006710 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-45
Identity = 116/190 (61.05%), Postives = 133/190 (70.00%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AIESLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

[Close]

BLAST of Lsi09G006710 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.4e-39
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 0


Query: 33  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAP 92
           +LN+ +G +KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP  PKDP AP   PK K T  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 YPK-PAPTSAPVAGPPRGRGRPPKVKPAVAPV 184
             + PA  S       R RGRPPKVKP +  V
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

[Close]

BLAST of Lsi09G006710 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.6e-34
Identity = 101/197 (51.27%), Postives = 122/197 (61.93%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATD+     P PP        YPEMI+ AIE L+DK+G +KSAI+K IE  YG LPPA 
Sbjct: 1   MATDEATKPSPIPP--------YPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSP 120
            +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK   P  P P P +  S 
Sbjct: 61  ASLLTAHLARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSST 120

Query: 121 PRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK----------YPKPAPTSAPVAG 180
            R RGRPPK K   +P+    K+ T+G  +PRGRPPK           P PAP  A    
Sbjct: 121 GRGRGRPPKAK---SPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGS 180

[Close]

BLAST of Lsi09G006710 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.2e-05
Identity = 59/179 (32.96%), Postives = 85/179 (47.49%), Query Frame = 0


Query: 19  SLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLL 78
           S P + EMI  AI +L ++ G S+ AI K +E  +  LP  F  LL  HL  +  +G+L+
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLV 109

Query: 79  FVKNNYMKPDPNAPPKRGRGRP---PKPKVPLPPGTVVSPPRPRGR---------PPKPK 138
            VKN++  P   A P     +    PKPKV   P T     +P+ +           K  
Sbjct: 110 KVKNSFKLPSARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTKTV 169

Query: 139 DPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRP-PKVKPAVAPVG 185
               P ++PK KT   +G+P+    K  K A T+A VA P + +  P  KVK   +P G
Sbjct: 170 AKKIPAAKPKAKT---AGKPKTVAAKPAKVAKTAA-VASPGKKKAVPVKKVKTVKSPAG 224

[Close]

BLAST of Lsi09G006710 vs. ExPASy TrEMBL
Match: A0A5D3E3W3 (HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00410 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.5e-95
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. ExPASy TrEMBL
Match: A0A1S3CSD8 (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.5e-95
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. ExPASy TrEMBL
Match: A0A0A0KPG4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. ExPASy TrEMBL
Match: A0A6J1JSA2 (HMG-Y-related protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111487099 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 172/185 (92.97%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT DQLNNPPQPPPPAPSLPHYPEMIM+AI++LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Lsi09G006710 vs. ExPASy TrEMBL
Match: A0A6J1GLV6 (HMG-Y-related protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111455542 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 172/185 (92.97%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT DQLNNPPQPPPPAPSLPHYPEMIM+AI++LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: XP_038906720.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.0e-96
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  STLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180
           RPPKPKDPFAPISQPKKKTT GSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV
Sbjct: 121 RPPKPKDPFAPISQPKKKTTPGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related protein A [Cucumis melo var. makuwa] >TYK30498.1 HMG-Y-related protein A [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 9.4e-95
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: XP_004150116.1 (HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_008586 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: XP_022953026.1 (HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related protein B-like [Cucurbita maxima] >KAG6601871.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032572.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 172/185 (92.97%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT DQLNNPPQPPPPAPSLPHYPEMIM+AI++LNDKNGVSKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Lsi09G006710 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016774.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 174/186 (93.55%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIMTAIE+LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAP+GC
Sbjct: 181 VAPIGC 186

[Close]

BLAST of Lsi09G006710 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 184.1 bits (466), Expect = 1.0e-46
Identity = 116/190 (61.05%), Postives = 133/190 (70.00%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AIESLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

[Close]

BLAST of Lsi09G006710 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 75/209 (35.89%), Postives = 91/209 (43.54%), Query Frame = 0


Query: 2   ATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFT 61
           A   Q    P PP P+ S P Y +MI TAI +LN+ +G SK AI++ IE  Y  +P A  
Sbjct: 57  APPQQPQTSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHG 116

Query: 62  TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP---------------PKPKVP 121
            LLTHHL  +K +G L+ VK +Y       PP      P               P P   
Sbjct: 117 ALLTHHLKTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPV 176

Query: 122 LPPGTVVSPPRPRGRPPKPKDPFAPISQP---KKKTTSGSGRPRGR-------PPKYP-K 181
           L   T  +  R RGRPPK K P     QP    K T   S  P  R       PP+ P +
Sbjct: 177 LASSTPQTIKRGRGRPPKAK-PDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQ 236

Query: 182 PAPTSAPVAGPPRGRGRPPKVKPAVAPVG 185
           P        G PR  G  P VKPA +  G
Sbjct: 237 PQQPVKRPPGRPRKDGTSPTVKPAASVSG 264

[Close]

BLAST of Lsi09G006710 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 72/203 (35.47%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 11  PQPP----PPAPSLPH--YPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI  AI +LN+ +G SK AI++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  THHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
           THHL  +K +G L  VK +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVSP-PRPRGRPPKPKDPF--APISQ-PKKKTTSGSGRPRGRPPKYPKPAPTSAPVA 184
            G+   P  R RGRPPKPK      P+ Q P       +G+P     +   P P   PV 
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

The following BLAST results are available for this feature:

BLAST of Lsi09G006710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	2.6e-47	62.50	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	1.4e-45	61.05	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q10370	4.4e-39	63.16	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FYS5	9.6e-34	51.27	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
Q9M5W4	4.2e-05	32.96	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]

BLAST of Lsi09G006710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3W3	4.5e-95	98.39	HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSD8	4.5e-95	98.39	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
A0A0A0KPG4	5.9e-95	97.85	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV...	[more]
A0A6J1JSA2	6.8e-91	92.97	HMG-Y-related protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111487099 PE=4 SV...	[more]
A0A6J1GLV6	6.8e-91	92.97	HMG-Y-related protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111455542 PE=4 ...	[more]

BLAST of Lsi09G006710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906720.1	5.0e-96	98.92	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_008466945.1	9.4e-95	98.39	PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related pr...	[more]
XP_004150116.1	1.2e-94	97.85	HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_0...	[more]
XP_022953026.1	1.4e-90	92.97	HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related ...	[more]
XP_022938491.1	1.8e-90	93.55	HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein...	[more]

BLAST of Lsi09G006710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	1.0e-46	61.05	high mobility group A	[more]
AT1G48620.1	3.4e-10	35.89	high mobility group A5	[more]
AT3G18035.1	1.3e-09	35.47	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 114..125 score: 65.97 coord: 142..152 score: 69.32 coord: 94..104 score: 77.27
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 116..128 e-value: 23.0 score: 7.6 coord: 144..156 e-value: 2.2 score: 13.3 coord: 167..179 e-value: 1.1 score: 15.1 coord: 94..106 e-value: 11.0 score: 9.3
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 65.93 coord: 118..129 score: 50.0 coord: 107..118 score: 41.67 coord: 133..152 score: 49.29
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 e-value: 1.5E-20 score: 84.3
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..82 e-value: 2.9E-10 score: 40.4
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 19..88 score: 22.420851
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 16..97 e-value: 1.3E-13 score: 52.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..183
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..183
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 15..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G006710.1	Lsi09G006710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding