Lsi09G006630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G006630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	chr09: 7405984 .. 7406277 (+)
RNA-Seq Expression	Lsi09G006630
Synteny	Lsi09G006630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTACGAACCGGAACCTGCAGTCGCCACGGCGCCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCATTTTACTTCCGCCTAGCCTCTGTTTTCAGCTGCCACCACCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTTCCTCAGCTGAGCTTCTCGACCACCGTCAGTCATCCGCCGGCGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGAGAGTACGAACCGGAACCTGCAGTCGCCACGGCGCCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCATTTTACTTCCGCCTAGCCTCTGTTTTCAGCTGCCACCACCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTTCCTCAGCTGAGCTTCTCGACCACCGTCAGTCATCCGCCGGCGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGAGAGTACGAACCGGAACCTGCAGTCGCCACGGCGCCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCATTTTACTTCCGCCTAGCCTCTGTTTTCAGCTGCCACCACCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTTCCTCAGCTGAGCTTCTCGACCACCGTCAGTCATCCGCCGGCGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MRVRTGTCSRHGAGATTALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAPPATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN

Homology

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BLAST of Lsi09G006630 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.6e-06
Identity = 40/103 (38.83%), Postives = 46/103 (44.66%), Query Frame = 0


Query: 6  GTCSRHGAGATTALLLFFWVLL----ILLPPS-------LCFQLPPPPPPSRKLARFSTA 65
          G   R     T    LFF+V      I+L  S       L     PPPPP RK  R+STA
Sbjct: 12 GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66 SFRHAPPATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
           FR  P +                  YGDDKR++HTGPNPLHN
Sbjct: 72 PFR-GPLSRDD--------------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Lsi09G006630 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.8e-30
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MRVRTGTCSRHGAGATTALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAP 60
          M  +TGT SRH A  TTALLLFFWVLLIL P +LC  LPPPPPPSRKLARFSTASFRHAP
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61 P--ATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
          P   TS AELLD RQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Lsi09G006630 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.8e-30
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MRVRTGTCSRHGAGATTALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAP 60
          M  +TGT SRH A  TTALLLFFWVLLIL P +LC  LPPPPPPSRKLARFSTASFRHAP
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61 P--ATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
          P   TS AELLD RQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Lsi09G006630 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1  MRVRTGTCSRHGAGATTALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAP 60
          M   TGT SRH    TTAL LFFWVLLI  P +LC  LPPPPPPSRKLARFSTA F HAP
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61 P--ATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
          P   TS AEL D  QS+A AAAYG++KRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Lsi09G006630 vs. ExPASy TrEMBL
Match: A0A067FB56 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 41/94 (43.62%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 10  RHGAGATTALLLFFWVLLILLPPSLCFQLPPPPP------PSRKLARFSTASFRHAPPAT 69
           R  AGA  A   FFWV+LI     L   L            +RK   F+T S  HAPP +
Sbjct: 28  RRCAGAKAA-SFFFWVILIFSLLGLLCALHDDETGTYSSFSARKTRSFNTESTFHAPPPS 87

Query: 70  SSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
            S  L+D    + G++ Y DDKR+IHTGPNPLHN
Sbjct: 88  ISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

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BLAST of Lsi09G006630 vs. ExPASy TrEMBL
Match: V4UGP5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 41/94 (43.62%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 10  RHGAGATTALLLFFWVLLILLPPSLCFQLPPPPP------PSRKLARFSTASFRHAPPAT 69
           R  AGA  A   FFWV+LI     L   L            +RK   F+T S  HAPP +
Sbjct: 17  RRCAGAKAA-SFFFWVILIFSLLGLLCALHDDETGTYSSFSARKTRSFNTESTFHAPPPS 76

Query: 70  SSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
            S  L+D    + G++ Y DDKR+IHTGPNPLHN
Sbjct: 77  ISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Lsi09G006630 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.0e-31
Identity = 82/102 (80.39%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1  MRVRTGTCSRHGAGA--TTALLLFFWVLLILLP--PSLCFQLPPPPPPSRKLARFSTASF 60
          MRVRT TCSRHGAGA  TTAL+LF WVLLIL P   +LCFQLPP P   RKL RFSTASF
Sbjct: 1  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 60

Query: 61 RHAPPATSSAELLDHRQSSAG-AAAYGDDKRLIHTGPNPLHN 98
          RHAPPATS AELL  RQSSAG AAAYGD+KRLIHTGPNPLHN
Sbjct: 61 RHAPPATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of Lsi09G006630 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MRVRTGTCSRHGAGATTALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAP 60
          M  +TGT SRH A  TTALLLFFWVLLIL P +LC  LPPPPPPSRKLARFSTASFRHAP
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61 P--ATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
          P   TS AELLD RQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Lsi09G006630 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1  MRVRTGTCSRHGAGATTALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAP 60
          M   TGT SRH    TTAL LFFWVLLI  P +LC  LPPPPPPSRKLARFSTA F HAP
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61 P--ATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
          P   TS AEL D  QS+A AAAYG++KRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Lsi09G006630 vs. NCBI nr
Match: KAG6579251.1 (hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 1   MRVRTGTCSRHGAGA--TTALLLFFWVLLILLP--PSLCFQLPPPPPPSRKLARFSTASF 60
           MRVRT TCSRHGAGA  TTAL+LF WVLLIL P   +LCFQLPP P   RKL RFSTASF
Sbjct: 29  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 88

Query: 61  RHAPPATSSAELLDHRQSSAG-AAAYGDDKRLIHT 91
           RHAP ATS AELL  RQSSAG AAAYGD+KRLIHT
Sbjct: 89  RHAPSATSPAELLHRRQSSAGAAAAYGDEKRLIHT 120

[Close]

BLAST of Lsi09G006630 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-22
Identity = 64/94 (68.09%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 7  TCSRHGAGATT--ALLLFFWVLLILLPPSLCFQLPPPPPPSRKLARFSTASFRHAPPATS 66
          T + H + ATT  A LLFFWVLLI  PP+LC  LPPPPP SRKL  FSTAS  H   ATS
Sbjct: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSH---ATS 61

Query: 67 SAELLDHRQSSAGAAA-YGDDKRLIHTGPNPLHN 98
            ELL HR +SA AAA Y DDKRLIHTGPNPLHN
Sbjct: 62 PPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of Lsi09G006630 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 51.2 bits (121), Expect = 5.4e-07
Identity = 40/103 (38.83%), Postives = 46/103 (44.66%), Query Frame = 0


Query: 6  GTCSRHGAGATTALLLFFWVLL----ILLPPS-------LCFQLPPPPPPSRKLARFSTA 65
          G   R     T    LFF+V      I+L  S       L     PPPPP RK  R+STA
Sbjct: 12 GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66 SFRHAPPATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
           FR  P +                  YGDDKR++HTGPNPLHN
Sbjct: 72 PFR-GPLSRDD--------------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Lsi09G006630 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 51.2 bits (121), Expect = 5.4e-07
Identity = 40/103 (38.83%), Postives = 46/103 (44.66%), Query Frame = 0


Query: 6  GTCSRHGAGATTALLLFFWVLL----ILLPPS-------LCFQLPPPPPPSRKLARFSTA 65
          G   R     T    LFF+V      I+L  S       L     PPPPP RK  R+STA
Sbjct: 12 GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66 SFRHAPPATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
           FR  P +                  YGDDKR++HTGPNPLHN
Sbjct: 72 PFR-GPLSRDD--------------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Lsi09G006630 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 40.8 bits (94), Expect = 7.3e-04
Identity = 25/56 (44.64%), Postives = 28/56 (50.00%), Query Frame = 0


Query: 42  PPPSRKLARFSTASFRHAPPATSSAELLDHRQSSAGAAAYGDDKRLIHTGPNPLHN 98
           P   RK   F   +   AP AT S      R+       Y DDKRL+HTGPNPLHN
Sbjct: 49  PSLPRKAGHFHEMASFQAPKATVSF-TGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of Lsi09G006630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	7.6e-06	38.83	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of Lsi09G006630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY55	7.8e-30	75.76	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	7.8e-30	75.76	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A0A0KSY2	1.1e-28	71.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A067FB56	2.7e-06	43.62	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706m...	[more]
V4UGP5	2.7e-06	43.62	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 ...	[more]

BLAST of Lsi09G006630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016766.1	5.0e-31	80.39	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008437694.1	1.6e-29	75.76	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
XP_011656246.1	2.3e-28	71.72	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
KAG6579251.1	4.1e-25	77.89	hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601877.1	7.2e-22	68.09	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Lsi09G006630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	5.4e-07	38.83	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	5.4e-07	38.83	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	7.3e-04	44.64	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..97
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 3..97
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 3..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G006630.1	Lsi09G006630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development