Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCATTAATTCCCTTTCAATCTCCTCCACCAATTCCGCTTCCTTCCTCTTCCCTTCCACTTCCTCCGGCCACCACCGCCGCCGGCTACCAGTGGCCGGAATCGTAAGGGCGTCGAGAGAAGCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTAGTAGACGAGAGCATGATCGTGCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCGGATTGGTTTGATTGGGAGAAACGGTATTATTCCGATTACGATTCTCATATCTGTGAGGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGCCCTAGCGTCGCCTTGGGAATGCTCCTTGTTATTACTCTCAGCGTTCCGCTTTCCTCCGCCCTTCTTCTCCACCACTTCTTCCAAATCGCCGTCGCGCTTCTCGCCGCTTTCCATCCCTAA
mRNA sequence
ATGAAATCCATTAATTCCCTTTCAATCTCCTCCACCAATTCCGCTTCCTTCCTCTTCCCTTCCACTTCCTCCGGCCACCACCGCCGCCGGCTACCAGTGGCCGGAATCGTAAGGGCGTCGAGAGAAGCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTAGTAGACGAGAGCATGATCGTGCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCGGATTGGTTTGATTGGGAGAAACGGTATTATTCCGATTACGATTCTCATATCTGTGAGGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGCCCTAGCGTCGCCTTGGGAATGCTCCTTGTTATTACTCTCAGCGTTCCGCTTTCCTCCGCCCTTCTTCTCCACCACTTCTTCCAAATCGCCGTCGCGCTTCTCGCCGCTTTCCATCCCTAA
Coding sequence (CDS)
ATGAAATCCATTAATTCCCTTTCAATCTCCTCCACCAATTCCGCTTCCTTCCTCTTCCCTTCCACTTCCTCCGGCCACCACCGCCGCCGGCTACCAGTGGCCGGAATCGTAAGGGCGTCGAGAGAAGCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTAGTAGACGAGAGCATGATCGTGCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCGGATTGGTTTGATTGGGAGAAACGGTATTATTCCGATTACGATTCTCATATCTGTGAGGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGCCCTAGCGTCGCCTTGGGAATGCTCCTTGTTATTACTCTCAGCGTTCCGCTTTCCTCCGCCCTTCTTCTCCACCACTTCTTCCAAATCGCCGTCGCGCTTCTCGCCGCTTTCCATCCCTAA
Protein sequence
MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASREAADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP
Homology
BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match:
A0A5A7TY46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00240 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.2e-50
Identity = 121/161 (75.16%), Postives = 126/161 (78.26%), Query Frame = 0
Query: 1 MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASRE-AADNNNN-------YYA 60
MKSINSLS S + S LF H RR+ A VRASRE AADNNNN YYA
Sbjct: 1 MKSINSLSFS---TPSPLFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYA 60
Query: 61 SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKRYYSDYDSHICEALGYLQSHLMN
Sbjct: 61 GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMN 120
Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
TRPSVALGMLL+I +SVPLSSALLLH FF IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLAGFSP 158
BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match:
A0A0A0KPI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)
HSP 1 Score: 203.8 bits (517), Expect = 5.3e-49
Identity = 115/161 (71.43%), Postives = 125/161 (77.64%), Query Frame = 0
Query: 1 MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASREAA--------DNNNNYYA 60
M+SINSLS S+ + LF + H RR+ A VRASRE A +NNNNYYA
Sbjct: 1 MESINSLSFSTPS----LFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNYYA 60
Query: 61 SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKR+YSDYDSHICEALGYLQSHLMN
Sbjct: 61 GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMN 120
Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
TRPSVALGMLL+I +SVPLSSALLLH F IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSP 157
BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match:
A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 108/149 (72.48%), Postives = 122/149 (81.88%), Query Frame = 0
Query: 8 SISSTNSASFL--FPSTSSGHHRRRLPVAGIVRASREA-----ADNNNNYYASGKVVDES 67
SISS NSA FL P + S RRRLP+ ++ +SR A +NNNNYYASGK+VDES
Sbjct: 3 SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62
Query: 68 MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 127
MIVLRKRIHEIKM EQSH+PP+DW DWEKR YSDYDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63 MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122
Query: 128 MLLVITLSVPLSSALLLHHFFQIAVALLA 150
+LL+ITLSVPLSSA++LH F IA ALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151
BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match:
A0A1S3AV87 (uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 109/136 (80.15%), Postives = 114/136 (83.82%), Query Frame = 0
Query: 27 HRRRLPVAGI-VRASRE-AADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQS 86
H RR P+ + VRASRE AADNNNN YYA GKVVDESMIVLRKRIHEIKMAEQ
Sbjct: 18 HGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYAGGKVVDESMIVLRKRIHEIKMAEQR 77
Query: 87 HDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLL 146
+PPADW DWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL+I +SVPLSSALLL
Sbjct: 78 QEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIVSVPLSSALLL 137
Query: 147 HHFFQIAVALLAAFHP 154
H FF IAVALLA F P
Sbjct: 138 HRFFHIAVALLAGFSP 153
BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match:
A0A6J1FMN3 (uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC111445338 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.5e-48
Identity = 108/147 (73.47%), Postives = 122/147 (82.99%), Query Frame = 0
Query: 8 SISSTNSASFL--FPSTSSGHHRRRLPVAGIVRASREA---ADNNNNYYASGKVVDESMI 67
SISS NSA FL P +SS RRR P+ ++ +SR A + NNNNYYASGK+VDESMI
Sbjct: 3 SISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMI 62
Query: 68 VLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGML 127
VLRKRIHEIKM E+SH+PP+DW DWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG+L
Sbjct: 63 VLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGIL 122
Query: 128 LVITLSVPLSSALLLHHFFQIAVALLA 150
L+ITLSVPLSSA++LH F IA ALLA
Sbjct: 123 LLITLSVPLSSAVILHRFIDIAAALLA 149
BLAST of Lsi09G006510 vs. NCBI nr
Match:
XP_038875502.1 (uncharacterized protein LOC120067929 [Benincasa hispida])
HSP 1 Score: 238.0 bits (606), Expect = 5.2e-59
Identity = 132/157 (84.08%), Postives = 139/157 (88.54%), Query Frame = 0
Query: 1 MKSINSL--SISSTNSASFLFPSTSSGHHRRRLPVAGIVRA-SREAAD-NNNNYYASGKV 60
MKSINSL SISSTNSA FLFPSTS+ H RRLP+A V A SR +AD NNNNYYASGKV
Sbjct: 1 MKSINSLDRSISSTNSAPFLFPSTSA-HRHRRLPLAVTVTASSRSSADKNNNNYYASGKV 60
Query: 61 VDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPS 120
VDESMIVLRKRIHEIKMAEQSH+PPADW DWEKRYYSDYDSHICEALGYLQ+HLMNTRPS
Sbjct: 61 VDESMIVLRKRIHEIKMAEQSHEPPADWLDWEKRYYSDYDSHICEALGYLQTHLMNTRPS 120
Query: 121 VALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
VALGMLL+ITLSVP SSA+LLH FFQIA ALLA F P
Sbjct: 121 VALGMLLLITLSVPFSSAILLHRFFQIAAALLAGFSP 156
BLAST of Lsi09G006510 vs. NCBI nr
Match:
KAA0046315.1 (uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa])
HSP 1 Score: 208.4 bits (529), Expect = 4.4e-50
Identity = 121/161 (75.16%), Postives = 126/161 (78.26%), Query Frame = 0
Query: 1 MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASRE-AADNNNN-------YYA 60
MKSINSLS S + S LF H RR+ A VRASRE AADNNNN YYA
Sbjct: 1 MKSINSLSFS---TPSPLFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYA 60
Query: 61 SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKRYYSDYDSHICEALGYLQSHLMN
Sbjct: 61 GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMN 120
Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
TRPSVALGMLL+I +SVPLSSALLLH FF IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLAGFSP 158
BLAST of Lsi09G006510 vs. NCBI nr
Match:
XP_004150478.1 (uncharacterized protein LOC101215395 [Cucumis sativus])
HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 115/161 (71.43%), Postives = 125/161 (77.64%), Query Frame = 0
Query: 1 MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASREAA--------DNNNNYYA 60
M+SINSLS S+ + LF + H RR+ A VRASRE A +NNNNYYA
Sbjct: 1 MESINSLSFSTPS----LFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNYYA 60
Query: 61 SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKR+YSDYDSHICEALGYLQSHLMN
Sbjct: 61 GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMN 120
Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
TRPSVALGMLL+I +SVPLSSALLLH F IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSP 157
BLAST of Lsi09G006510 vs. NCBI nr
Match:
XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])
HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 108/149 (72.48%), Postives = 122/149 (81.88%), Query Frame = 0
Query: 8 SISSTNSASFL--FPSTSSGHHRRRLPVAGIVRASREA-----ADNNNNYYASGKVVDES 67
SISS NSA FL P + S RRRLP+ ++ +SR A +NNNNYYASGK+VDES
Sbjct: 3 SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62
Query: 68 MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 127
MIVLRKRIHEIKM EQSH+PP+DW DWEKR YSDYDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63 MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122
Query: 128 MLLVITLSVPLSSALLLHHFFQIAVALLA 150
+LL+ITLSVPLSSA++LH F IA ALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151
BLAST of Lsi09G006510 vs. NCBI nr
Match:
XP_008437695.1 (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])
HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 109/136 (80.15%), Postives = 114/136 (83.82%), Query Frame = 0
Query: 27 HRRRLPVAGI-VRASRE-AADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQS 86
H RR P+ + VRASRE AADNNNN YYA GKVVDESMIVLRKRIHEIKMAEQ
Sbjct: 18 HGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYAGGKVVDESMIVLRKRIHEIKMAEQR 77
Query: 87 HDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLL 146
+PPADW DWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL+I +SVPLSSALLL
Sbjct: 78 QEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIVSVPLSSALLL 137
Query: 147 HHFFQIAVALLAAFHP 154
H FF IAVALLA F P
Sbjct: 138 HRFFHIAVALLAGFSP 153
BLAST of Lsi09G006510 vs. TAIR 10
Match:
AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 122.5 bits (306), Expect = 3.0e-28
Identity = 58/114 (50.88%), Postives = 85/114 (74.56%), Query Frame = 0
Query: 37 VRASREAADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYD 96
+R S A+ ++YY G++VDE+MIVLRKRIHE+KM E++++PP+ W DWEKR+Y+ YD
Sbjct: 36 MRVSAAASSGKDHYYGGGRLVDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYD 95
Query: 97 SHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAA 151
S IC+++G LQS LMN+RP+VA+ LL + +SVP+SS ++ + LLAA
Sbjct: 96 SVICDSVGLLQSFLMNSRPTVAIATLLFLLVSVPVSSTVIAFRLIDLLHWLLAA 149
BLAST of Lsi09G006510 vs. TAIR 10
Match:
AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 115.9 bits (289), Expect = 2.8e-26
Identity = 55/104 (52.88%), Postives = 77/104 (74.04%), Query Frame = 0
Query: 49 NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQS 108
+YY G+ VDE+M+VLRKRIHE+KM E++ +PP+ W WEKR+Y +YD+ IC+AL LQ+
Sbjct: 37 DYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQT 96
Query: 109 HLMNTRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFH 153
LMN+RPSVA G L++ +SVP+SSA+ +A+ LL A H
Sbjct: 97 FLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWLLDAVH 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TY46 | 2.2e-50 | 75.16 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0A0KPI5 | 5.3e-49 | 71.43 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1 | [more] |
A0A6J1JZG1 | 3.4e-48 | 72.48 | uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262... | [more] |
A0A1S3AV87 | 3.4e-48 | 80.15 | uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=... | [more] |
A0A6J1FMN3 | 4.5e-48 | 73.47 | uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC1114453... | [more] |
Match Name | E-value | Identity | Description | |
XP_038875502.1 | 5.2e-59 | 84.08 | uncharacterized protein LOC120067929 [Benincasa hispida] | [more] |
KAA0046315.1 | 4.4e-50 | 75.16 | uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa] | [more] |
XP_004150478.1 | 1.1e-48 | 71.43 | uncharacterized protein LOC101215395 [Cucumis sativus] | [more] |
XP_022993164.1 | 7.1e-48 | 72.48 | uncharacterized protein LOC111489262 [Cucurbita maxima] | [more] |
XP_008437695.1 | 7.1e-48 | 80.15 | PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
AT2G01300.1 | 3.0e-28 | 50.88 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT1G15010.1 | 2.8e-26 | 52.88 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |