Lsi09G006510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G006510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 7286823 .. 7287284 (+)
RNA-Seq ExpressionLsi09G006510
SyntenyLsi09G006510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCATTAATTCCCTTTCAATCTCCTCCACCAATTCCGCTTCCTTCCTCTTCCCTTCCACTTCCTCCGGCCACCACCGCCGCCGGCTACCAGTGGCCGGAATCGTAAGGGCGTCGAGAGAAGCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTAGTAGACGAGAGCATGATCGTGCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCGGATTGGTTTGATTGGGAGAAACGGTATTATTCCGATTACGATTCTCATATCTGTGAGGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGCCCTAGCGTCGCCTTGGGAATGCTCCTTGTTATTACTCTCAGCGTTCCGCTTTCCTCCGCCCTTCTTCTCCACCACTTCTTCCAAATCGCCGTCGCGCTTCTCGCCGCTTTCCATCCCTAA

mRNA sequence

ATGAAATCCATTAATTCCCTTTCAATCTCCTCCACCAATTCCGCTTCCTTCCTCTTCCCTTCCACTTCCTCCGGCCACCACCGCCGCCGGCTACCAGTGGCCGGAATCGTAAGGGCGTCGAGAGAAGCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTAGTAGACGAGAGCATGATCGTGCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCGGATTGGTTTGATTGGGAGAAACGGTATTATTCCGATTACGATTCTCATATCTGTGAGGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGCCCTAGCGTCGCCTTGGGAATGCTCCTTGTTATTACTCTCAGCGTTCCGCTTTCCTCCGCCCTTCTTCTCCACCACTTCTTCCAAATCGCCGTCGCGCTTCTCGCCGCTTTCCATCCCTAA

Coding sequence (CDS)

ATGAAATCCATTAATTCCCTTTCAATCTCCTCCACCAATTCCGCTTCCTTCCTCTTCCCTTCCACTTCCTCCGGCCACCACCGCCGCCGGCTACCAGTGGCCGGAATCGTAAGGGCGTCGAGAGAAGCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTAGTAGACGAGAGCATGATCGTGCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCGGATTGGTTTGATTGGGAGAAACGGTATTATTCCGATTACGATTCTCATATCTGTGAGGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGCCCTAGCGTCGCCTTGGGAATGCTCCTTGTTATTACTCTCAGCGTTCCGCTTTCCTCCGCCCTTCTTCTCCACCACTTCTTCCAAATCGCCGTCGCGCTTCTCGCCGCTTTCCATCCCTAA

Protein sequence

MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASREAADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP
Homology
BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match: A0A5A7TY46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00240 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.2e-50
Identity = 121/161 (75.16%), Postives = 126/161 (78.26%), Query Frame = 0

Query: 1   MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASRE-AADNNNN-------YYA 60
           MKSINSLS S   + S LF      H RR+   A  VRASRE AADNNNN       YYA
Sbjct: 1   MKSINSLSFS---TPSPLFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYA 60

Query: 61  SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
            GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKRYYSDYDSHICEALGYLQSHLMN
Sbjct: 61  GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMN 120

Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
           TRPSVALGMLL+I +SVPLSSALLLH FF IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLAGFSP 158

BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match: A0A0A0KPI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.3e-49
Identity = 115/161 (71.43%), Postives = 125/161 (77.64%), Query Frame = 0

Query: 1   MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASREAA--------DNNNNYYA 60
           M+SINSLS S+ +    LF   +  H RR+   A  VRASRE A        +NNNNYYA
Sbjct: 1   MESINSLSFSTPS----LFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNYYA 60

Query: 61  SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
            GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR+YSDYDSHICEALGYLQSHLMN
Sbjct: 61  GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMN 120

Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
           TRPSVALGMLL+I +SVPLSSALLLH F  IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSP 157

BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match: A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 108/149 (72.48%), Postives = 122/149 (81.88%), Query Frame = 0

Query: 8   SISSTNSASFL--FPSTSSGHHRRRLPVAGIVRASREA-----ADNNNNYYASGKVVDES 67
           SISS NSA FL   P + S   RRRLP+  ++ +SR A      +NNNNYYASGK+VDES
Sbjct: 3   SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62

Query: 68  MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 127
           MIVLRKRIHEIKM EQSH+PP+DW DWEKR YSDYDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63  MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122

Query: 128 MLLVITLSVPLSSALLLHHFFQIAVALLA 150
           +LL+ITLSVPLSSA++LH F  IA ALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151

BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match: A0A1S3AV87 (uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 109/136 (80.15%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 27  HRRRLPVAGI-VRASRE-AADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQS 86
           H RR P+  + VRASRE AADNNNN       YYA GKVVDESMIVLRKRIHEIKMAEQ 
Sbjct: 18  HGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYAGGKVVDESMIVLRKRIHEIKMAEQR 77

Query: 87  HDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLL 146
            +PPADW DWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL+I +SVPLSSALLL
Sbjct: 78  QEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIVSVPLSSALLL 137

Query: 147 HHFFQIAVALLAAFHP 154
           H FF IAVALLA F P
Sbjct: 138 HRFFHIAVALLAGFSP 153

BLAST of Lsi09G006510 vs. ExPASy TrEMBL
Match: A0A6J1FMN3 (uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC111445338 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.5e-48
Identity = 108/147 (73.47%), Postives = 122/147 (82.99%), Query Frame = 0

Query: 8   SISSTNSASFL--FPSTSSGHHRRRLPVAGIVRASREA---ADNNNNYYASGKVVDESMI 67
           SISS NSA FL   P +SS   RRR P+  ++ +SR A   + NNNNYYASGK+VDESMI
Sbjct: 3   SISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMI 62

Query: 68  VLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGML 127
           VLRKRIHEIKM E+SH+PP+DW DWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG+L
Sbjct: 63  VLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGIL 122

Query: 128 LVITLSVPLSSALLLHHFFQIAVALLA 150
           L+ITLSVPLSSA++LH F  IA ALLA
Sbjct: 123 LLITLSVPLSSAVILHRFIDIAAALLA 149

BLAST of Lsi09G006510 vs. NCBI nr
Match: XP_038875502.1 (uncharacterized protein LOC120067929 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 5.2e-59
Identity = 132/157 (84.08%), Postives = 139/157 (88.54%), Query Frame = 0

Query: 1   MKSINSL--SISSTNSASFLFPSTSSGHHRRRLPVAGIVRA-SREAAD-NNNNYYASGKV 60
           MKSINSL  SISSTNSA FLFPSTS+ H  RRLP+A  V A SR +AD NNNNYYASGKV
Sbjct: 1   MKSINSLDRSISSTNSAPFLFPSTSA-HRHRRLPLAVTVTASSRSSADKNNNNYYASGKV 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPS 120
           VDESMIVLRKRIHEIKMAEQSH+PPADW DWEKRYYSDYDSHICEALGYLQ+HLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKMAEQSHEPPADWLDWEKRYYSDYDSHICEALGYLQTHLMNTRPS 120

Query: 121 VALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
           VALGMLL+ITLSVP SSA+LLH FFQIA ALLA F P
Sbjct: 121 VALGMLLLITLSVPFSSAILLHRFFQIAAALLAGFSP 156

BLAST of Lsi09G006510 vs. NCBI nr
Match: KAA0046315.1 (uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-50
Identity = 121/161 (75.16%), Postives = 126/161 (78.26%), Query Frame = 0

Query: 1   MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASRE-AADNNNN-------YYA 60
           MKSINSLS S   + S LF      H RR+   A  VRASRE AADNNNN       YYA
Sbjct: 1   MKSINSLSFS---TPSPLFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYA 60

Query: 61  SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
            GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKRYYSDYDSHICEALGYLQSHLMN
Sbjct: 61  GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMN 120

Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
           TRPSVALGMLL+I +SVPLSSALLLH FF IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLAGFSP 158

BLAST of Lsi09G006510 vs. NCBI nr
Match: XP_004150478.1 (uncharacterized protein LOC101215395 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 115/161 (71.43%), Postives = 125/161 (77.64%), Query Frame = 0

Query: 1   MKSINSLSISSTNSASFLFPSTSSGHHRRRLPVAGIVRASREAA--------DNNNNYYA 60
           M+SINSLS S+ +    LF   +  H RR+   A  VRASRE A        +NNNNYYA
Sbjct: 1   MESINSLSFSTPS----LFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNYYA 60

Query: 61  SGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMN 120
            GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR+YSDYDSHICEALGYLQSHLMN
Sbjct: 61  GGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMN 120

Query: 121 TRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFHP 154
           TRPSVALGMLL+I +SVPLSSALLLH F  IAVALLA F P
Sbjct: 121 TRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSP 157

BLAST of Lsi09G006510 vs. NCBI nr
Match: XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 108/149 (72.48%), Postives = 122/149 (81.88%), Query Frame = 0

Query: 8   SISSTNSASFL--FPSTSSGHHRRRLPVAGIVRASREA-----ADNNNNYYASGKVVDES 67
           SISS NSA FL   P + S   RRRLP+  ++ +SR A      +NNNNYYASGK+VDES
Sbjct: 3   SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62

Query: 68  MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 127
           MIVLRKRIHEIKM EQSH+PP+DW DWEKR YSDYDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63  MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122

Query: 128 MLLVITLSVPLSSALLLHHFFQIAVALLA 150
           +LL+ITLSVPLSSA++LH F  IA ALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151

BLAST of Lsi09G006510 vs. NCBI nr
Match: XP_008437695.1 (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 109/136 (80.15%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 27  HRRRLPVAGI-VRASRE-AADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQS 86
           H RR P+  + VRASRE AADNNNN       YYA GKVVDESMIVLRKRIHEIKMAEQ 
Sbjct: 18  HGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYAGGKVVDESMIVLRKRIHEIKMAEQR 77

Query: 87  HDPPADWFDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLL 146
            +PPADW DWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL+I +SVPLSSALLL
Sbjct: 78  QEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIVSVPLSSALLL 137

Query: 147 HHFFQIAVALLAAFHP 154
           H FF IAVALLA F P
Sbjct: 138 HRFFHIAVALLAGFSP 153

BLAST of Lsi09G006510 vs. TAIR 10
Match: AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-28
Identity = 58/114 (50.88%), Postives = 85/114 (74.56%), Query Frame = 0

Query: 37  VRASREAADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYD 96
           +R S  A+   ++YY  G++VDE+MIVLRKRIHE+KM E++++PP+ W DWEKR+Y+ YD
Sbjct: 36  MRVSAAASSGKDHYYGGGRLVDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYD 95

Query: 97  SHICEALGYLQSHLMNTRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAA 151
           S IC+++G LQS LMN+RP+VA+  LL + +SVP+SS ++      +   LLAA
Sbjct: 96  SVICDSVGLLQSFLMNSRPTVAIATLLFLLVSVPVSSTVIAFRLIDLLHWLLAA 149

BLAST of Lsi09G006510 vs. TAIR 10
Match: AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-26
Identity = 55/104 (52.88%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 49  NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSDYDSHICEALGYLQS 108
           +YY  G+ VDE+M+VLRKRIHE+KM E++ +PP+ W  WEKR+Y +YD+ IC+AL  LQ+
Sbjct: 37  DYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQT 96

Query: 109 HLMNTRPSVALGMLLVITLSVPLSSALLLHHFFQIAVALLAAFH 153
            LMN+RPSVA G  L++ +SVP+SSA+       +A+ LL A H
Sbjct: 97  FLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWLLDAVH 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TY462.2e-5075.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KPI55.3e-4971.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1[more]
A0A6J1JZG13.4e-4872.48uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262... [more]
A0A1S3AV873.4e-4880.15uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=... [more]
A0A6J1FMN34.5e-4873.47uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC1114453... [more]
Match NameE-valueIdentityDescription
XP_038875502.15.2e-5984.08uncharacterized protein LOC120067929 [Benincasa hispida][more]
KAA0046315.14.4e-5075.16uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa][more]
XP_004150478.11.1e-4871.43uncharacterized protein LOC101215395 [Cucumis sativus][more]
XP_022993164.17.1e-4872.48uncharacterized protein LOC111489262 [Cucurbita maxima][more]
XP_008437695.17.1e-4880.15PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT2G01300.13.0e-2850.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15010.12.8e-2652.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33782OS01G0121600 PROTEINcoord: 1..152
NoneNo IPR availablePANTHERPTHR33782:SF13MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNITcoord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G006510.1Lsi09G006510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane