Lsi09G006320 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G006320
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 6959217 .. 6959546 (+)
RNA-Seq ExpressionLsi09G006320
SyntenyLsi09G006320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCCAGCCATCAAGGCAGTCCTTGTGGAAGAGGTGGCGACAGGGGAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAATCGGAGGCAGAATCGTGGTCGGAGTGGACGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGGTGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGCGGAGAGGAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

mRNA sequence

ATGGTGAAGCCAGCCATCAAGGCAGTCCTTGTGGAAGAGGTGGCGACAGGGGAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAATCGGAGGCAGAATCGTGGTCGGAGTGGACGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGGTGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGCGGAGAGGAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGGTGAAGCCAGCCATCAAGGCAGTCCTTGTGGAAGAGGTGGCGACAGGGGAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAATCGGAGGCAGAATCGTGGTCGGAGTGGACGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGGTGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGCGGAGAGGAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

Protein sequence

MVKPAIKAVLVEEVATGEAADEVAGGERGETDDAIGGRIVVGVDVAVGEEAIEMKVVGERGNIRERETVVGGGRGGGGEEGAEKGEEIGEEREKEERERVVGEIVELAL
Homology
BLAST of Lsi09G006320 vs. ExPASy TrEMBL
Match: A0A0A0KUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.4e-24
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MVKPAIKAVLVEEVATGEAADEVAGGERGETDDAIGGRI-VVGVDVAVGEEAIEMKVVGE 60
           MVKPA++AV +EEVA GE ADEV G ERGETDDAIGG + VVGV V VGE+AIEM++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIRERETVVGGGRGGGGEEGAEKGEEIGEEREKEERERVVGEIVELAL 110
           RG IR   TVVGGG  G    GAE+ EEIG+ERE+EERER+VGE++EL +
Sbjct: 91  RGEIR---TVVGGGEEG----GAEEREEIGKEREEEERERMVGEVIELCV 133

BLAST of Lsi09G006320 vs. NCBI nr
Match: KAG6579228.1 (hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 0

Query: 1   MVKPAIKAVLVEEVATGEAADEVAGGERGETDDAIGGRIVVGVDVAVGEEAIEMKVVGER 60
           M++  ++AVLVE+VA  +AADEVAGGERGETDDA+GG I VGV VAV EEAIE+KVVGER
Sbjct: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDDAVGGGI-VGVRVAVREEAIEVKVVGER 60

Query: 61  GNIRERETVVGGGRGGGGEEGAEKGEEIGEEREKEERERVVGEIVELAL 110
           GNI E    V G R  GGE+GAEKGEEIGEERE+EERER+ GE+VELAL
Sbjct: 61  GNIGE---AVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 105

BLAST of Lsi09G006320 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_008164 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MVKPAIKAVLVEEVATGEAADEVAGGERGETDDAIGGRI-VVGVDVAVGEEAIEMKVVGE 60
           MVKPA++AV +EEVA GE ADEV G ERGETDDAIGG + VVGV V VGE+AIEM++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIRERETVVGGGRGGGGEEGAEKGEEIGEEREKEERERVVGEIVELAL 110
           RG IR   TVVGGG  G    GAE+ EEIG+ERE+EERER+VGE++EL +
Sbjct: 91  RGEIR---TVVGGGEEG----GAEEREEIGKEREEEERERMVGEVIELCV 133

BLAST of Lsi09G006320 vs. NCBI nr
Match: KAG6601827.1 (hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 1  MVKPAIKAVLVEEVATGEAADEVAGGERGETDDAIGGRIVVGVDVAVGEEAIEMKVVGER 60
          M+KP I+AVLVE+V   E AD V  GE  E DD +GG   +GV VAVGE+AIEMK++ ER
Sbjct: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGG-GIGV-VAVGEKAIEMKMLVER 60

Query: 61 GNIRERETVVGGGRGGGGEEGAEKGEEIGEEREKEERE 99
          GNI      +G   GGG E  AE+GEEIGEERE+EERE
Sbjct: 61 GNIG-----IGRRSGGGEERTAEEGEEIGEEREEEERE 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUZ69.4e-2467.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6579228.11.8e-2472.48hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN51526.11.9e-2367.27hypothetical protein Csa_008164 [Cucumis sativus][more]
KAG6601827.12.2e-1159.18hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G006320.1Lsi09G006320.1mRNA