Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGTCTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGAAAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG
mRNA sequence
ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGTCTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGAAAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG
Coding sequence (CDS)
ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGTCTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGAAAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG
Protein sequence
MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTSRPSRTVE
Homology
BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match:
A0A2N9GM45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1)
HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
M +S+LEL +AAS++LFIFCF NLII ILL SK S S F ++PLS+V++
Sbjct: 1 MFDSMLELITQAASNSLFIFCFCNLIIAILLVASK--SSSDF-----GQQGEIPLSVVIN 60
Query: 61 SNTNTTE---------QNSMLQK-DPTERCMNFTFNDHVEQSDDDH-EDEDGDEDEFRRK 120
++TN N ML+ D D E ++++ +DED D+DE RR+
Sbjct: 61 TSTNHKHVTNGKQVFFYNKMLRNFDEVSYSHEAPVADKEESGNNNNKKDEDEDDDELRRR 120
Query: 121 VEEFIEKVNRGWREESRRTSR 131
VEEFIEKVN+GW+ E R+SR
Sbjct: 121 VEEFIEKVNKGWKAELLRSSR 134
BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match:
A0A2I4E8V2 (uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 6.2e-09
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
M +S+LEL AAS++LFIFCF NLII+ ++ S PN D +D++P+S++++
Sbjct: 1 MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSS------PNLDKEDEIPVSVIIN 60
Query: 61 SNTNTTEQNSMLQK-DPTERCMNFT-----------FNDHVEQSDDDHEDED-----GDE 120
++T+ + Q D E +N D E+ + DH+++D D
Sbjct: 61 TSTHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 120
Query: 121 DEFRRKVEEFIEKVNRGWREE 125
DE RR+VEEFIEKVN+GW+EE
Sbjct: 121 DELRRRVEEFIEKVNKGWKEE 135
BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match:
A0A1J7H148 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17690 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSF 60
M +SILE AASS+ FIFCF NLII+I+L KP ++F
Sbjct: 1 MLDSILEFITHAASSSAFIFCFCNLIIVIILVDLKPRLSIHQESEIPLPMDATQKQGTNF 60
Query: 61 DHPNDDDD---------DDMPLSIVVHS-NTNTTEQNSMLQKDPTERCMNFTFNDHVEQS 120
HP D + D P +I V++ T + ++++++ E + E+
Sbjct: 61 KHPKDTESSPEAEIAEVDTEPKAIAVNNIETKGNDDWNIIEEEEKEE-----VEEEEEEE 120
Query: 121 DDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTS 130
+++ E+E+ D+DE +R+VEEFIEKVNRGW++ES R S
Sbjct: 121 EEEEEEEEEDDDELKRRVEEFIEKVNRGWKQESLRIS 152
BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match:
A0A6A4NKM5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028722 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 55/150 (36.67%), Postives = 78/150 (52.00%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSF 60
M +SILE EAASS+ FIFCF NLII+I+L KP + F
Sbjct: 1 MLDSILEFITEAASSSAFIFCFCNLIIVIILVDLKPRLTIHQESEIPLSMDASQKQGTHF 60
Query: 61 DHPNDDDDDDMPL---SIVVHSNTNTTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDE 120
HP D + + S + N T+ N + E+ + E+ ++D E+E
Sbjct: 61 KHPKDTESSPEEVHTESKAIAVNNIETKGNDDWNIEEEEKEEVEEEEEEKEEEEEDEEEE 120
Query: 121 DGDEDEFRRKVEEFIEKVNRGWREESRRTS 130
+ ++DE +R+VEEFIEKVNRGW++ES TS
Sbjct: 121 EEEDDELKRRVEEFIEKVNRGWKQESLSTS 150
BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match:
A0A5N6RPH7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018156 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
M + + EL +AAS+ LFIFCF NLII I+L SKP S H ++P+S+V++
Sbjct: 1 MLDYMFELITQAASNHLFIFCFCNLIIAIVLVGSKPT--SKIGHA-----AEIPISLVIN 60
Query: 61 SNTN------------------TTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDEDGD 120
+ TN Q S Q+ P + N + D+D +D+D D
Sbjct: 61 TRTNRNPGADSKQLFYDKETLRNVNQVSCSQEAPVDDGREENGNGSNKNEDED-DDDDDD 120
Query: 121 EDEFRRKVEEFIEKVNRGWREESRR 128
+DE RRKVEEFIEKVN+GW+ E R
Sbjct: 121 DDELRRKVEEFIEKVNKGWKAEILR 137
BLAST of Lsi09G005400 vs. NCBI nr
Match:
XP_031742158.1 (probable ATP-dependent RNA helicase ddx52 [Cucumis sativus])
HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 98/145 (67.59%), Postives = 111/145 (76.55%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
MA+SILELA +A SSTLFIFCFFNLIIL++ FTS+P + SSFD N DD+DMPLSIV+H
Sbjct: 1 MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPAT-SSFDQQN--DDNDMPLSIVIH 60
Query: 61 SNTNTTEQNSMLQKDP-------------TERCMNFTFNDHVEQSD----DDHEDEDGDE 120
S TNTTEQNSMLQKDP TERC+NF N VEQSD DD+EDED DE
Sbjct: 61 SKTNTTEQNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDE 120
Query: 121 DEFRRKVEEFIEKVNRGWREESRRT 129
D+FR++VEEFIEKVNRGWREE RT
Sbjct: 121 DDFRQRVEEFIEKVNRGWREERLRT 142
BLAST of Lsi09G005400 vs. NCBI nr
Match:
KAG6605668.1 (hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29
Identity = 93/143 (65.03%), Postives = 105/143 (73.43%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
MA+SILELA EAASSTLFIFC FNLI+LI+LFTS+PVS SS DH N DD+PLSIV+H
Sbjct: 1 MADSILELAAEAASSTLFIFCIFNLILLIILFTSRPVS-SSSDHQN---HDDVPLSIVIH 60
Query: 61 SNTNTTEQNSMLQKDP-------TERCMNFTFNDHVEQSDDDHEDEDGDEDE------FR 120
SNTN +QN MLQK+ TE F+D VE S DDHEDED DEDE F+
Sbjct: 61 SNTN-AQQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDEDEDEDEVEDEEDFK 120
Query: 121 RKVEEFIEKVNRGWREESRRTSR 131
R+VEEFIEKVN GWREE +RTSR
Sbjct: 121 RRVEEFIEKVNSGWREERQRTSR 138
BLAST of Lsi09G005400 vs. NCBI nr
Match:
KAF5480291.1 (hypothetical protein F2P56_001053, partial [Juglans regia])
HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 55/141 (39.01%), Postives = 84/141 (59.57%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
M +S+LEL AAS++LFIFCFFNLII ++L SK PN D + ++P+S++++
Sbjct: 22 MFDSMLELMSRAASNSLFIFCFFNLIIAVILVGSK-------SSPNLDKEVEIPVSVIIN 81
Query: 61 SNTNTTEQNSMLQ----KDPTERCMNFTFN--------DHVEQSDDDHE----DEDG-DE 120
++T + Q K+ + +++ D E+ + DH+ D+DG D
Sbjct: 82 TSTYKKQGRKSEQLFDGKESSRNANELSYSLQEAAPDADKEEKDNSDHDNKDVDKDGEDH 141
Query: 121 DEFRRKVEEFIEKVNRGWREE 125
DE RR+VEEFIEKVN+GW+EE
Sbjct: 142 DELRRRVEEFIEKVNKGWKEE 155
BLAST of Lsi09G005400 vs. NCBI nr
Match:
XP_018815821.1 (uncharacterized protein LOC108987375 [Juglans regia])
HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
M +S+LEL AAS++LFIFCF NLII+ ++ S PN D +D++P+S++++
Sbjct: 1 MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSS------PNLDKEDEIPVSVIIN 60
Query: 61 SNTNTTEQNSMLQK-DPTERCMNFT-----------FNDHVEQSDDDHEDED-----GDE 120
++T+ + Q D E +N D E+ + DH+++D D
Sbjct: 61 TSTHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 120
Query: 121 DEFRRKVEEFIEKVNRGWREE 125
DE RR+VEEFIEKVN+GW+EE
Sbjct: 121 DELRRRVEEFIEKVNKGWKEE 135
BLAST of Lsi09G005400 vs. NCBI nr
Match:
KAF5480290.1 (hypothetical protein F2P56_001052, partial [Juglans regia])
HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 0
Query: 1 MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
M +S+LEL AAS++LFIFCF NLII+ ++ S PN D +D++P+S++++
Sbjct: 22 MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSS------PNLDKEDEIPVSVIIN 81
Query: 61 SNTNTTEQNSMLQK-DPTERCMNFT-----------FNDHVEQSDDDHEDED-----GDE 120
++T+ + Q D E +N D E+ + DH+++D D
Sbjct: 82 TSTHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 141
Query: 121 DEFRRKVEEFIEKVNRGWREESRRTSR 131
DE RR+VEEFIEKVN+GW+EE +SR
Sbjct: 142 DELRRRVEEFIEKVNQGWKEELLGSSR 162
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9GM45 | 5.6e-10 | 43.26 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1 | [more] |
A0A2I4E8V2 | 6.2e-09 | 37.59 | uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 P... | [more] |
A0A1J7H148 | 1.4e-08 | 35.03 | Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17690 PE=4 S... | [more] |
A0A6A4NKM5 | 2.4e-08 | 36.67 | Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028722 PE=4 SV=1 | [more] |
A0A5N6RPH7 | 2.4e-08 | 38.62 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018156 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_031742158.1 | 1.9e-36 | 67.59 | probable ATP-dependent RNA helicase ddx52 [Cucumis sativus] | [more] |
KAG6605668.1 | 1.0e-29 | 65.03 | hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAF5480291.1 | 1.5e-09 | 39.01 | hypothetical protein F2P56_001053, partial [Juglans regia] | [more] |
XP_018815821.1 | 1.3e-08 | 37.59 | uncharacterized protein LOC108987375 [Juglans regia] | [more] |
KAF5480290.1 | 1.3e-08 | 37.41 | hypothetical protein F2P56_001052, partial [Juglans regia] | [more] |
Match Name | E-value | Identity | Description | |