Lsi09G005400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G005400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionrRNA processing protein EBP2
Locationchr09: 5669271 .. 5669681 (-)
RNA-Seq ExpressionLsi09G005400
SyntenyLsi09G005400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGTCTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGAAAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG

mRNA sequence

ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGTCTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGAAAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG

Coding sequence (CDS)

ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGTCTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGAAAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG

Protein sequence

MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTSRPSRTVE
Homology
BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match: A0A2N9GM45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           M +S+LEL  +AAS++LFIFCF NLII ILL  SK  S S F         ++PLS+V++
Sbjct: 1   MFDSMLELITQAASNSLFIFCFCNLIIAILLVASK--SSSDF-----GQQGEIPLSVVIN 60

Query: 61  SNTNTTE---------QNSMLQK-DPTERCMNFTFNDHVEQSDDDH-EDEDGDEDEFRRK 120
           ++TN             N ML+  D           D  E  ++++ +DED D+DE RR+
Sbjct: 61  TSTNHKHVTNGKQVFFYNKMLRNFDEVSYSHEAPVADKEESGNNNNKKDEDEDDDELRRR 120

Query: 121 VEEFIEKVNRGWREESRRTSR 131
           VEEFIEKVN+GW+ E  R+SR
Sbjct: 121 VEEFIEKVNKGWKAELLRSSR 134

BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match: A0A2I4E8V2 (uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.2e-09
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           M +S+LEL   AAS++LFIFCF NLII+ ++      S      PN D +D++P+S++++
Sbjct: 1   MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSS------PNLDKEDEIPVSVIIN 60

Query: 61  SNTNTTEQNSMLQK-DPTERCMNFT-----------FNDHVEQSDDDHEDED-----GDE 120
           ++T+  +     Q  D  E  +N               D  E+ + DH+++D      D 
Sbjct: 61  TSTHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 120

Query: 121 DEFRRKVEEFIEKVNRGWREE 125
           DE RR+VEEFIEKVN+GW+EE
Sbjct: 121 DELRRRVEEFIEKVNKGWKEE 135

BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match: A0A1J7H148 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17690 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSF 60
           M +SILE    AASS+ FIFCF NLII+I+L   KP                     ++F
Sbjct: 1   MLDSILEFITHAASSSAFIFCFCNLIIVIILVDLKPRLSIHQESEIPLPMDATQKQGTNF 60

Query: 61  DHPNDDDD---------DDMPLSIVVHS-NTNTTEQNSMLQKDPTERCMNFTFNDHVEQS 120
            HP D +          D  P +I V++  T   +  ++++++  E        +  E+ 
Sbjct: 61  KHPKDTESSPEAEIAEVDTEPKAIAVNNIETKGNDDWNIIEEEEKEE-----VEEEEEEE 120

Query: 121 DDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTS 130
           +++ E+E+ D+DE +R+VEEFIEKVNRGW++ES R S
Sbjct: 121 EEEEEEEEEDDDELKRRVEEFIEKVNRGWKQESLRIS 152

BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match: A0A6A4NKM5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028722 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 55/150 (36.67%), Postives = 78/150 (52.00%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSF 60
           M +SILE   EAASS+ FIFCF NLII+I+L   KP                     + F
Sbjct: 1   MLDSILEFITEAASSSAFIFCFCNLIIVIILVDLKPRLTIHQESEIPLSMDASQKQGTHF 60

Query: 61  DHPNDDDDDDMPL---SIVVHSNTNTTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDE 120
            HP D +     +   S  +  N   T+ N     +  E+       +  E+ ++D E+E
Sbjct: 61  KHPKDTESSPEEVHTESKAIAVNNIETKGNDDWNIEEEEKEEVEEEEEEKEEEEEDEEEE 120

Query: 121 DGDEDEFRRKVEEFIEKVNRGWREESRRTS 130
           + ++DE +R+VEEFIEKVNRGW++ES  TS
Sbjct: 121 EEEDDELKRRVEEFIEKVNRGWKQESLSTS 150

BLAST of Lsi09G005400 vs. ExPASy TrEMBL
Match: A0A5N6RPH7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018156 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 56/145 (38.62%), Postives = 77/145 (53.10%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           M + + EL  +AAS+ LFIFCF NLII I+L  SKP   S   H       ++P+S+V++
Sbjct: 1   MLDYMFELITQAASNHLFIFCFCNLIIAIVLVGSKPT--SKIGHA-----AEIPISLVIN 60

Query: 61  SNTN------------------TTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDEDGD 120
           + TN                     Q S  Q+ P +       N   +  D+D +D+D D
Sbjct: 61  TRTNRNPGADSKQLFYDKETLRNVNQVSCSQEAPVDDGREENGNGSNKNEDED-DDDDDD 120

Query: 121 EDEFRRKVEEFIEKVNRGWREESRR 128
           +DE RRKVEEFIEKVN+GW+ E  R
Sbjct: 121 DDELRRKVEEFIEKVNKGWKAEILR 137

BLAST of Lsi09G005400 vs. NCBI nr
Match: XP_031742158.1 (probable ATP-dependent RNA helicase ddx52 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 98/145 (67.59%), Postives = 111/145 (76.55%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           MA+SILELA +A SSTLFIFCFFNLIIL++ FTS+P + SSFD  N  DD+DMPLSIV+H
Sbjct: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPAT-SSFDQQN--DDNDMPLSIVIH 60

Query: 61  SNTNTTEQNSMLQKDP-------------TERCMNFTFNDHVEQSD----DDHEDEDGDE 120
           S TNTTEQNSMLQKDP             TERC+NF  N  VEQSD    DD+EDED DE
Sbjct: 61  SKTNTTEQNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDE 120

Query: 121 DEFRRKVEEFIEKVNRGWREESRRT 129
           D+FR++VEEFIEKVNRGWREE  RT
Sbjct: 121 DDFRQRVEEFIEKVNRGWREERLRT 142

BLAST of Lsi09G005400 vs. NCBI nr
Match: KAG6605668.1 (hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29
Identity = 93/143 (65.03%), Postives = 105/143 (73.43%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           MA+SILELA EAASSTLFIFC FNLI+LI+LFTS+PVS SS DH N    DD+PLSIV+H
Sbjct: 1   MADSILELAAEAASSTLFIFCIFNLILLIILFTSRPVS-SSSDHQN---HDDVPLSIVIH 60

Query: 61  SNTNTTEQNSMLQKDP-------TERCMNFTFNDHVEQSDDDHEDEDGDEDE------FR 120
           SNTN  +QN MLQK+        TE      F+D VE S DDHEDED DEDE      F+
Sbjct: 61  SNTN-AQQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDEDEDEDEVEDEEDFK 120

Query: 121 RKVEEFIEKVNRGWREESRRTSR 131
           R+VEEFIEKVN GWREE +RTSR
Sbjct: 121 RRVEEFIEKVNSGWREERQRTSR 138

BLAST of Lsi09G005400 vs. NCBI nr
Match: KAF5480291.1 (hypothetical protein F2P56_001053, partial [Juglans regia])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 55/141 (39.01%), Postives = 84/141 (59.57%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           M +S+LEL   AAS++LFIFCFFNLII ++L  SK         PN D + ++P+S++++
Sbjct: 22  MFDSMLELMSRAASNSLFIFCFFNLIIAVILVGSK-------SSPNLDKEVEIPVSVIIN 81

Query: 61  SNTNTTEQNSMLQ----KDPTERCMNFTFN--------DHVEQSDDDHE----DEDG-DE 120
           ++T   +     Q    K+ +      +++        D  E+ + DH+    D+DG D 
Sbjct: 82  TSTYKKQGRKSEQLFDGKESSRNANELSYSLQEAAPDADKEEKDNSDHDNKDVDKDGEDH 141

Query: 121 DEFRRKVEEFIEKVNRGWREE 125
           DE RR+VEEFIEKVN+GW+EE
Sbjct: 142 DELRRRVEEFIEKVNKGWKEE 155

BLAST of Lsi09G005400 vs. NCBI nr
Match: XP_018815821.1 (uncharacterized protein LOC108987375 [Juglans regia])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           M +S+LEL   AAS++LFIFCF NLII+ ++      S      PN D +D++P+S++++
Sbjct: 1   MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSS------PNLDKEDEIPVSVIIN 60

Query: 61  SNTNTTEQNSMLQK-DPTERCMNFT-----------FNDHVEQSDDDHEDED-----GDE 120
           ++T+  +     Q  D  E  +N               D  E+ + DH+++D      D 
Sbjct: 61  TSTHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 120

Query: 121 DEFRRKVEEFIEKVNRGWREE 125
           DE RR+VEEFIEKVN+GW+EE
Sbjct: 121 DELRRRVEEFIEKVNKGWKEE 135

BLAST of Lsi09G005400 vs. NCBI nr
Match: KAF5480290.1 (hypothetical protein F2P56_001052, partial [Juglans regia])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 0

Query: 1   MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVH 60
           M +S+LEL   AAS++LFIFCF NLII+ ++      S      PN D +D++P+S++++
Sbjct: 22  MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSS------PNLDKEDEIPVSVIIN 81

Query: 61  SNTNTTEQNSMLQK-DPTERCMNFT-----------FNDHVEQSDDDHEDED-----GDE 120
           ++T+  +     Q  D  E  +N               D  E+ + DH+++D      D 
Sbjct: 82  TSTHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 141

Query: 121 DEFRRKVEEFIEKVNRGWREESRRTSR 131
           DE RR+VEEFIEKVN+GW+EE   +SR
Sbjct: 142 DELRRRVEEFIEKVNQGWKEELLGSSR 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9GM455.6e-1043.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1[more]
A0A2I4E8V26.2e-0937.59uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 P... [more]
A0A1J7H1481.4e-0835.03Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17690 PE=4 S... [more]
A0A6A4NKM52.4e-0836.67Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028722 PE=4 SV=1[more]
A0A5N6RPH72.4e-0838.62Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018156 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_031742158.11.9e-3667.59probable ATP-dependent RNA helicase ddx52 [Cucumis sativus][more]
KAG6605668.11.0e-2965.03hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF5480291.11.5e-0939.01hypothetical protein F2P56_001053, partial [Juglans regia][more]
XP_018815821.11.3e-0837.59uncharacterized protein LOC108987375 [Juglans regia][more]
KAF5480290.11.3e-0837.41hypothetical protein F2P56_001052, partial [Juglans regia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..109
NoneNo IPR availablePANTHERPTHR36595TRANSMEMBRANE PROTEINcoord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G005400.1Lsi09G005400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity