Lsi09G005260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G005260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 5545595 .. 5545921 (+)
RNA-Seq ExpressionLsi09G005260
SyntenyLsi09G005260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAATGGCTTCCAATAAGAAGCACTTCTTGATAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATGATCTTGAATCCAAATAATGGTACATTTTCCAGTAACTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTGCTAACTAAGATCAATATGAAAAGTTTATAAGTTCAAGCTTTTTTTTTTTTTTCAGGAAATATGAAGGCCCTAGAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAAAT

mRNA sequence

ATGGATGAAATGGCTTCCAATAAGAAGCACTTCTTGATAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATGATCTTGAATCCAAATAATGGTACATTTTCCAGAAATATGAAGGCCCTAGAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAAAT

Coding sequence (CDS)

ATGGATGAAATGGCTTCCAATAAGAAGCACTTCTTGATAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATGATCTTGAATCCAAATAATGGTACATTTTCCAGAAATATGAAGGCCCTAGAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAAAT

Protein sequence

MDEMASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVGRIVRRDLAHGGNYGPGN
Homology
[Close]
BLAST of Lsi09G005260 vs. ExPASy TrEMBL
Match: A0A0A0KL54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MDEMASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVG-RI 60
          M++MAS KKH LIILA +LYLMLFLSTYGAAR++        + +MK  EIKVIVVG RI
Sbjct: 1  MNKMASYKKH-LIILATLLYLMLFLSTYGAARIL------DLNGSMKVREIKVIVVGRRI 60

Query: 61 VRRDLAHGGNYGPG 74
          VRRDLAHGGNYGPG
Sbjct: 61 VRRDLAHGGNYGPG 67

[Close]
BLAST of Lsi09G005260 vs. NCBI nr
Match: KGN50358.1 (hypothetical protein Csa_000417 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MDEMASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVG-RI 60
          M++MAS KKH LIILA +LYLMLFLSTYGAAR++        + +MK  EIKVIVVG RI
Sbjct: 1  MNKMASYKKH-LIILATLLYLMLFLSTYGAARIL------DLNGSMKVREIKVIVVGRRI 60

Query: 61 VRRDLAHGGNYGPG 74
          VRRDLAHGGNYGPG
Sbjct: 61 VRRDLAHGGNYGPG 67

[Close]
BLAST of Lsi09G005260 vs. NCBI nr
Match: KAG6605659.1 (hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-11
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 4  MASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVGRIVRRD 63
          M SNKKH LI L IVLYLMLFLS+YGAAR+ + PN      +M A E+K I +GRI+RRD
Sbjct: 1  MGSNKKH-LIPLVIVLYLMLFLSSYGAARVFI-PNG-----HMNAFEMKPITLGRIMRRD 60

Query: 64 LAHGGNYGPG 74
          LA+GGNY PG
Sbjct: 61 LAYGGNYSPG 63

[Close]
BLAST of Lsi09G005260 vs. NCBI nr
Match: KAG7035570.1 (hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-11
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 4  MASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVGRIVRRD 63
          M SNKKH LI L IVLYLMLFLS+YGAAR+ + PN      +M A E+K I +GRI+RRD
Sbjct: 1  MGSNKKH-LIPLVIVLYLMLFLSSYGAARVFI-PNG-----HMNAFEMKPITLGRIMRRD 60

Query: 64 LAHGGNYGPG 74
          LA+GGNY PG
Sbjct: 61 LAYGGNYSPG 63

The following BLAST results are available for this feature:
BLAST of Lsi09G005260 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi09G005260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL542.7e-1470.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of Lsi09G005260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50358.15.5e-1470.27hypothetical protein Csa_000417 [Cucumis sativus][more]
KAG6605659.14.4e-1164.29hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035570.14.4e-1164.29hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lsi09G005260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G005260.1Lsi09G005260.1mRNA