Lsi09G004940 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATACCAAACATTCCCCCATTCTTTTTTATTCTTCCTCCATTCACTTCTGCCCTAATTTCTCACTTCTTCTTCTTCCTCCACTCGCTTCAGATACTCCATTGTTGACTCTCTTAAGGTACGCTTCTAATTTTTGGTTTCTTTTACAATTTCGATTCCGAATTCTATGATCTCTTTAACCTTTGATTTCAAATGTTCATCATGAAATCCATTCTGTTTTGCTCTGATCTCGTTAGTAAGTAACAATATTAGAAAATCTAACCCAAATTTTACTAATCGCATTCTAATTCTGTATTGTTTGTTACTATTTAACTTTATTGTGCCTATTTTCTCTCATTTTGAATTCCTCTTAGTTCGATTTCCCCTTTGTTTCTCATTATTCAAATCCCCTTGACTTTACCTTACCAGTAGAAGATAGAGGAAGCTTTATGAACATATAGAATTGGGATTCTGTACTAGAGATTTTGTAAACAGAGGAATACTATTCTCTTTGTGGATCTTTACTGATTATGAAACTGAAACTTCATCAGTTCTTGCTATGTACATCAATTCCTTTCCATTTTTTTATGGTTTATCTGAGATTTAAGTTTATATTCCTTCTTTAAATCCTCATTTCAATGAAATTTATCTAACTGAAAGGATGAATTGCTGCTGGGTTGCAGGGGAAATAGTATAATTTCTTGCTTTTTACATTTCAAATTTGTCTATATCTTCTAATTTTTCATCTCTCTAACCATGTAAAACTGATTCAAATGCTTTTTTTTCTTATTGTTTATGTATTAGAATGTCCAAGAGTTTAGCTACTAGTGACGAAAAAGAGAGACAAACAAAGGCTATTTGGGATGATGTTACTGTTGATTCATTCATAAATGTTTGTGTGACTGAGACATTAAATGGGAATAGACCTCGTGGTTATTTTACTAAAATTGGATGGAGGAATGTAGTTAAGAACTTCTATGAAAAGACTGGAAGAAATTATGGATACAAACAACTTAAGAACAAATGGACAACACTCAAGAAAGATTGGCAAGTTTGGAATGATTTGATTGAAAATGAAAAAGAAATTGGATGGGACCCTTTAAGGCAAACCATTGATGCAACTAGTAAATGGTGGGATCACAAATTAAAGGTAATCTTCCTTGAATTTGTATTTGTATAACAATTCTAAATTTTAGTGCAACTAGTTATAAAGTTGTTCATTGATTTGTTATTTTATAGATTCTTCCTGAAGCAGCCAAGTTTCGAGCAAAAGGACTACAAAATTTGGAACTCTTGAACATTCTTTTTAAAGATGTTGCAGTTAATGGAAGAGCTTGGGCCCCAACCCCATCTCAAGTTGTTTTATGTAAGGCTACAAGTGACGGGATTGAAGATTATAATGATGACACAATAGGAGACACAAAGTTCAACGAGAATGAGTTTAACAATGTTGAAAGTAACACGAATGAAGTTAATACTAGTGCGACTTACACTCAAGGGAGTGAGAAAAGGAGGAAAAAAGTAGATTCAAAAGTTGGATCACCTTCTAGATTGTTTGGTGCATTAGATCGTCTTTGTGATGCCATAGAATATAGAAGAAGAGATTTGCCAGGATGTAGTACTCTTGAAGTAATGGAAACTTTAAGAGGCTTACCTGGAATTATAGAAGGTGATGAGTTGTATATGAAAGCTGCAGATATCCTTATCAAAAGAGAAAATAGAGAAATGTTTGTTGCATTACGAAAGCCAGCGATACAAATTACATGGCTTAAGCAAAAAAGAGTTTGATATTATACTAATTTGACACAATAGGATTGTAAATAAGTCTTTAAAAAAAATTATTCTTAGCCTTAGTGGAAGACTTTGTTTTGTTTTGTTTTGTTCTTCCACTGTCGTTAGATCTCTTTGTCTAGTTAGATATGATACTATCATATTATACAATTGTTATAGTAAAGTGTAAGATTAAATGGTTTTCTTGTTGATTGCTAGTGTATCTTTTTAGATCATCGATACACCAAAATTGATGAGAAGTTTTATGGATTATTTTAAGATG ATACCAAACATTCCCCCATTCTTTTTTATTCTTCCTCCATTCACTTCTGCCCTAATTTCTCACTTCTTCTTCTTCCTCCACTCGCTTCAGATACTCCATTGTTGACTCTCTTAAGAATGTCCAAGAGTTTAGCTACTAGTGACGAAAAAGAGAGACAAACAAAGGCTATTTGGGATGATGTTACTGTTGATTCATTCATAAATGTTTGTGTGACTGAGACATTAAATGGGAATAGACCTCGTGGTTATTTTACTAAAATTGGATGGAGGAATGTAGTTAAGAACTTCTATGAAAAGACTGGAAGAAATTATGGATACAAACAACTTAAGAACAAATGGACAACACTCAAGAAAGATTGGCAAGTTTGGAATGATTTGATTGAAAATGAAAAAGAAATTGGATGGGACCCTTTAAGGCAAACCATTGATGCAACTAGTAAATGGTGGGATCACAAATTAAAGATTCTTCCTGAAGCAGCCAAGTTTCGAGCAAAAGGACTACAAAATTTGGAACTCTTGAACATTCTTTTTAAAGATGTTGCAGTTAATGGAAGAGCTTGGGCCCCAACCCCATCTCAAGTTGTTTTATGTAAGGCTACAAGTGACGGGATTGAAGATTATAATGATGACACAATAGGAGACACAAAGTTCAACGAGAATGAGTTTAACAATGTTGAAAGTAACACGAATGAAGTTAATACTAGTGCGACTTACACTCAAGGGAGTGAGAAAAGGAGGAAAAAAGTAGATTCAAAAGTTGGATCACCTTCTAGATTGTTTGGTGCATTAGATCGTCTTTGTGATGCCATAGAATATAGAAGAAGAGATTTGCCAGGATGTAGTACTCTTGAAGTAATGGAAACTTTAAGAGGCTTACCTGGAATTATAGAAGGTGATGAGTTGTATATGAAAGCTGCAGATATCCTTATCAAAAGAGAAAATAGAGAAATGTTTGTTGCATTACGAAAGCCAGCGATACAAATTACATGGCTTAAGCAAAAAAGAGTTTGATATTATACTAATTTGACACAATAGGATTGTAAATAAGTCTTTAAAAAAAATTATTCTTAGCCTTAGTGGAAGACTTTGTTTTGTTTTGTTTTGTTCTTCCACTGTCGTTAGATCTCTTTGTCTAGTTAGATATGATACTATCATATTATACAATTGTTATAGTAAAGTGTAAGATTAAATGGTTTTCTTGTTGATTGCTAGTGTATCTTTTTAGATCATCGATACACCAAAATTGATGAGAAGTTTTATGGATTATTTTAAGATG ATGTCCAAGAGTTTAGCTACTAGTGACGAAAAAGAGAGACAAACAAAGGCTATTTGGGATGATGTTACTGTTGATTCATTCATAAATGTTTGTGTGACTGAGACATTAAATGGGAATAGACCTCGTGGTTATTTTACTAAAATTGGATGGAGGAATGTAGTTAAGAACTTCTATGAAAAGACTGGAAGAAATTATGGATACAAACAACTTAAGAACAAATGGACAACACTCAAGAAAGATTGGCAAGTTTGGAATGATTTGATTGAAAATGAAAAAGAAATTGGATGGGACCCTTTAAGGCAAACCATTGATGCAACTAGTAAATGGTGGGATCACAAATTAAAGATTCTTCCTGAAGCAGCCAAGTTTCGAGCAAAAGGACTACAAAATTTGGAACTCTTGAACATTCTTTTTAAAGATGTTGCAGTTAATGGAAGAGCTTGGGCCCCAACCCCATCTCAAGTTGTTTTATGTAAGGCTACAAGTGACGGGATTGAAGATTATAATGATGACACAATAGGAGACACAAAGTTCAACGAGAATGAGTTTAACAATGTTGAAAGTAACACGAATGAAGTTAATACTAGTGCGACTTACACTCAAGGGAGTGAGAAAAGGAGGAAAAAAGTAGATTCAAAAGTTGGATCACCTTCTAGATTGTTTGGTGCATTAGATCGTCTTTGTGATGCCATAGAATATAGAAGAAGAGATTTGCCAGGATGTAGTACTCTTGAAGTAATGGAAACTTTAAGAGGCTTACCTGGAATTATAGAAGGTGATGAGTTGTATATGAAAGCTGCAGATATCCTTATCAAAAGAGAAAATAGAGAAATGTTTGTTGCATTACGAAAGCCAGCGATACAAATTACATGGCTTAAGCAAAAAAGAGTTTGA MSKSLATSDEKERQTKAIWDDVTVDSFINVCVTETLNGNRPRGYFTKIGWRNVVKNFYEKTGRNYGYKQLKNKWTTLKKDWQVWNDLIENEKEIGWDPLRQTIDATSKWWDHKLKILPEAAKFRAKGLQNLELLNILFKDVAVNGRAWAPTPSQVVLCKATSDGIEDYNDDTIGDTKFNENEFNNVESNTNEVNTSATYTQGSEKRRKKVDSKVGSPSRLFGALDRLCDAIEYRRRDLPGCSTLEVMETLRGLPGIIEGDELYMKAADILIKRENREMFVALRKPAIQITWLKQKRV Homology
BLAST of Lsi09G004940 vs. ExPASy Swiss-Prot
Match: Q9FFJ8 (L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=LIMYB PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27 Identity = 86/292 (29.45%), Postives = 142/292 (48.63%), Query Frame = 0
BLAST of Lsi09G004940 vs. ExPASy TrEMBL
Match: A0A5A7UN70 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00110 PE=4 SV=1) HSP 1 Score: 552.7 bits (1423), Expect = 9.0e-154 Identity = 271/297 (91.25%), Postives = 283/297 (95.29%), Query Frame = 0
BLAST of Lsi09G004940 vs. ExPASy TrEMBL
Match: A0A1S3AT15 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103482538 PE=4 SV=1) HSP 1 Score: 552.7 bits (1423), Expect = 9.0e-154 Identity = 271/297 (91.25%), Postives = 283/297 (95.29%), Query Frame = 0
BLAST of Lsi09G004940 vs. ExPASy TrEMBL
Match: A0A0A0KKV6 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G167170 PE=4 SV=1) HSP 1 Score: 540.4 bits (1391), Expect = 4.6e-150 Identity = 265/294 (90.14%), Postives = 278/294 (94.56%), Query Frame = 0
BLAST of Lsi09G004940 vs. ExPASy TrEMBL
Match: A0A6J1DZU8 (L10-interacting MYB domain-containing protein-like OS=Momordica charantia OX=3673 GN=LOC111026126 PE=4 SV=1) HSP 1 Score: 513.8 bits (1322), Expect = 4.7e-142 Identity = 253/297 (85.19%), Postives = 276/297 (92.93%), Query Frame = 0
BLAST of Lsi09G004940 vs. ExPASy TrEMBL
Match: A0A6J1EN01 (L10-interacting MYB domain-containing protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435828 PE=4 SV=1) HSP 1 Score: 495.4 bits (1274), Expect = 1.7e-136 Identity = 256/304 (84.21%), Postives = 272/304 (89.47%), Query Frame = 0
BLAST of Lsi09G004940 vs. NCBI nr
Match: XP_038874429.1 (L10-interacting MYB domain-containing protein-like [Benincasa hispida] >XP_038874430.1 L10-interacting MYB domain-containing protein-like [Benincasa hispida] >XP_038874431.1 L10-interacting MYB domain-containing protein-like [Benincasa hispida] >XP_038874432.1 L10-interacting MYB domain-containing protein-like [Benincasa hispida]) HSP 1 Score: 562.0 bits (1447), Expect = 3.1e-156 Identity = 278/297 (93.60%), Postives = 285/297 (95.96%), Query Frame = 0
BLAST of Lsi09G004940 vs. NCBI nr
Match: XP_008436966.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo] >KAA0055085.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 552.7 bits (1423), Expect = 1.9e-153 Identity = 271/297 (91.25%), Postives = 283/297 (95.29%), Query Frame = 0
BLAST of Lsi09G004940 vs. NCBI nr
Match: XP_004143736.1 (L10-interacting MYB domain-containing protein [Cucumis sativus] >XP_031740844.1 L10-interacting MYB domain-containing protein [Cucumis sativus] >XP_031740845.1 L10-interacting MYB domain-containing protein [Cucumis sativus] >KGN50325.1 hypothetical protein Csa_000493 [Cucumis sativus]) HSP 1 Score: 540.4 bits (1391), Expect = 9.6e-150 Identity = 265/294 (90.14%), Postives = 278/294 (94.56%), Query Frame = 0
BLAST of Lsi09G004940 vs. NCBI nr
Match: XP_022159819.1 (L10-interacting MYB domain-containing protein-like [Momordica charantia] >XP_022159820.1 L10-interacting MYB domain-containing protein-like [Momordica charantia]) HSP 1 Score: 513.8 bits (1322), Expect = 9.6e-142 Identity = 253/297 (85.19%), Postives = 276/297 (92.93%), Query Frame = 0
BLAST of Lsi09G004940 vs. NCBI nr
Match: XP_022929169.1 (L10-interacting MYB domain-containing protein-like [Cucurbita moschata] >XP_022929170.1 L10-interacting MYB domain-containing protein-like [Cucurbita moschata]) HSP 1 Score: 495.4 bits (1274), Expect = 3.5e-136 Identity = 256/304 (84.21%), Postives = 272/304 (89.47%), Query Frame = 0
BLAST of Lsi09G004940 vs. TAIR 10
Match: AT5G05800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 124.8 bits (312), Expect = 1.2e-28 Identity = 86/292 (29.45%), Postives = 142/292 (48.63%), Query Frame = 0
BLAST of Lsi09G004940 vs. TAIR 10
Match: AT5G05800.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). ) HSP 1 Score: 124.8 bits (312), Expect = 1.2e-28 Identity = 86/292 (29.45%), Postives = 142/292 (48.63%), Query Frame = 0
BLAST of Lsi09G004940 vs. TAIR 10
Match: AT3G11290.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 106.3 bits (264), Expect = 4.3e-23 Identity = 79/317 (24.92%), Postives = 141/317 (44.48%), Query Frame = 0
BLAST of Lsi09G004940 vs. TAIR 10
Match: AT2G19220.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 443 Blast hits to 267 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 77.4 bits (189), Expect = 2.1e-14 Identity = 42/145 (28.97%), Postives = 76/145 (52.41%), Query Frame = 0
BLAST of Lsi09G004940 vs. TAIR 10
Match: AT3G11310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 575 Blast hits to 342 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 559; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 57.4 bits (137), Expect = 2.3e-08 Identity = 44/202 (21.78%), Postives = 92/202 (45.54%), Query Frame = 0
HSP 2 Score: 42.4 bits (98), Expect = 7.6e-04 Identity = 18/51 (35.29%), Postives = 32/51 (62.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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