Lsi09G004030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G004030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	3-oxoacyl-[acyl-carrier-protein] synthase
Location	chr09: 4242194 .. 4243907 (-)
RNA-Seq Expression	Lsi09G004030
Synteny	Lsi09G004030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGGGCAAGATTTATACGTTTCTCTTTTTCCTCCTAACTACAAGAGACTTATAAATGAAAAATCAAATCTTGGTGGGGGAAGGGCAGGGCAAGGCAAGGCAATGCATGTCTGATCCTTCTGTTTGAGCTGAAATTGCTAAACATTGGAGTTTCCGCTATTTGGGTTTTGGAGTAATCGCCCCCATTTTCTCTTTCTCTTTCTCTCTGTCTCTCTCTTTTTTCTCTCGGACCTTTCTAGGATTCTGCAGAATAAGCATTGAAAATCGCCATTTCGATCTCTTCCCTCTTATGGGTTCTGGGTGTGGATGCTGTTTTCATCCCATTTTTCACTTTTCTTGAGTTGTTGTAACTTTCCCAAGTCTCTCTCTGTTTTCTGTCTTGTGGGTTCTGAGTGTTTAGTGAAATGGCCAATACATCTGGGTTCTTTGCAACATCAGTCCCGAGTCTAAGGGCGAGGAATTTGCCATTAGGAGGCAGTTTTCGATCTGGGTTTAGATCATCTGATGGAATATCTAAAGTAATATTCTGTTCTAGTTCTCTTGGGGCAGAGAAGGTTTCTTCTGGAGCTTCTCCTTCTGAATCTCGAGTGCCCAGGTAAATTACTATACCTCCTTTTCATCTTCAATTTTTATGTGGTTTGATTGGTTTGTTCTAGATTGAAATGGTTTTGGAGAGAGGTATAGTTTCCTGTTCCTTTGAGGGTATTAAGATTGCTTGCATTGTTTAGGAGTTGTTTGTGGAACTTAATTTGAATGAATGAATGACTTGCGTGGGTTGGTGCAAGAAAAGCCATTATTGAATCATTATTTACCTAGCATTTAGCAGAAACTCTTGAGCTGATAATTTATTTGCACCTTCTCGGCTGGTAGAACTGTGACCTAGTTGCTGTGGTCTATTGGATTTGGTTTTTTGATTGTAGAGAGTTTAATAGTTGTTGCACCTTTTACAGTACCTGAATACTTAGGAGACAGAATTTAGAATAGTCATGAATTTTAGAGGATAGCTCGCAGCAGATTTTATCTTGTTTATCTAGATTTGTGAAAGGACGGTCCACATTTGTGTTTCAATTTTCTGGAAGAACATTTTCTTGGCAACTGACTGCAGTGGGGTTGTGAGAATAGTCTAAGTGTATGCAAGCTAGTTTGGACACTCACGGATATGAAAAAGAACAAATTTGAAAGAAGAATTGGATATTTAACTAGTTTGGAACATGGTGGTGCCTTCATTTTTTCTCCATTACGTCCTTTTGCAATTGGCCTTTAACTTGGGGTTAAAATTAGAAGGATAAGCTCAGGCCTTATGATAAAGACGTTTGCTACATCAGATAAAAATGTTATAAATGGCTTCATTAATTTTTTTGTGTATTTAACTGGAATAGTACTTTCAGTTAGGAGATAACCCTCTATATGATCCTTTCTTTTAATAGACAAAATTCTTTTTGATAGAGACCCTCTATACGATCTTATGCTGATTCAGACAGTCACGCTAAAATGGAAAAAAATATATACTTTTACAGGATCGTCACTAGAGGCTGCAAGCTAGTTGGGTGTGGTTCAGCTGTACCAAGTCTTCAGATTTCAAATGATGATCTTGCAAAATTGGTTGATACAAATGATGAATGGATATCTGTTCGCACTGGGATTCGCAATCGAAGGGTGATTGCAGGTGTGTGCTATCTCATGGAGCAAACAGTAGGAGTCTACAACCAATGA

mRNA sequence

AAGAGGGCAAGATTTATACGTTTCTCTTTTTCCTCCTAACTACAAGAGACTTATAAATGAAAAATCAAATCTTGGTGGGGGAAGGGCAGGGCAAGGCAAGGCAATGCATGTCTGATCCTTCTGTTTGAGCTGAAATTGCTAAACATTGGAGTTTCCGCTATTTGGGTTTTGGAGTAATCGCCCCCATTTTCTCTTTCTCTTTCTCTCTGTCTCTCTCTTTTTTCTCTCGGACCTTTCTAGGATTCTGCAGAATAAGCATTGAAAATCGCCATTTCGATCTCTTCCCTCTTATGGGTTCTGGGTGTGGATGCTGTTTTCATCCCATTTTTCACTTTTCTTGAGTTGTTGTAACTTTCCCAAGTCTCTCTCTGTTTTCTGTCTTGTGGGTTCTGAGTGTTTAGTGAAATGGCCAATACATCTGGGTTCTTTGCAACATCAGTCCCGAGTCTAAGGGCGAGGAATTTGCCATTAGGAGGCAGTTTTCGATCTGGGTTTAGATCATCTGATGGAATATCTAAAGTAATATTCTGTTCTAGTTCTCTTGGGGCAGAGAAGGTTTCTTCTGGAGCTTCTCCTTCTGAATCTCGAGTGCCCAGGATCGTCACTAGAGGCTGCAAGCTAGTTGGGTGTGGTTCAGCTGTACCAAGTCTTCAGATTTCAAATGATGATCTTGCAAAATTGGTTGATACAAATGATGAATGGATATCTGTTCGCACTGGGATTCGCAATCGAAGGGTGATTGCAGGTGTGTGCTATCTCATGGAGCAAACAGTAGGAGTCTACAACCAATGA

Coding sequence (CDS)

ATGGCCAATACATCTGGGTTCTTTGCAACATCAGTCCCGAGTCTAAGGGCGAGGAATTTGCCATTAGGAGGCAGTTTTCGATCTGGGTTTAGATCATCTGATGGAATATCTAAAGTAATATTCTGTTCTAGTTCTCTTGGGGCAGAGAAGGTTTCTTCTGGAGCTTCTCCTTCTGAATCTCGAGTGCCCAGGATCGTCACTAGAGGCTGCAAGCTAGTTGGGTGTGGTTCAGCTGTACCAAGTCTTCAGATTTCAAATGATGATCTTGCAAAATTGGTTGATACAAATGATGAATGGATATCTGTTCGCACTGGGATTCGCAATCGAAGGGTGATTGCAGGTGTGTGCTATCTCATGGAGCAAACAGTAGGAGTCTACAACCAATGA

Protein sequence

MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAGVCYLMEQTVGVYNQ

Homology

[Close]

BLAST of Lsi09G004030 vs. ExPASy Swiss-Prot
Match: P49245 (3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic OS=Cuphea wrightii OX=35942 GN=KAS3B PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.6e-30
Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 1   MANTSGFFATSVPSL-RARNLPLGGSFRSGFRSSDGISKVIFCSSSL-GAEKVSSGASPS 60
           MAN  GF   SVP++ RA      G   SGF S+D ISK +FC S + GA+K +SG S +
Sbjct: 1   MANAYGFVGHSVPTMKRAAQFQQMG---SGFCSADSISKRVFCCSVVQGADKPASGDSRT 60

Query: 61  ESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           E R PR+V+RGCKLVG GSA+P+LQ+SNDDL+K+VDTNDEWISVRTGIRNRRV+ G
Sbjct: 61  EYRTPRLVSRGCKLVGSGSAMPALQVSNDDLSKIVDTNDEWISVRTGIRNRRVLTG 113

[Close]

BLAST of Lsi09G004030 vs. ExPASy Swiss-Prot
Match: P49244 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii OX=35942 GN=KAS3A PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-29
Identity = 69/115 (60.00%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSL-GAEKVSSGASPSE 60
           MAN SGF  +SVP+LR    P      S   SSD + K +FC S++ G+++ S G    +
Sbjct: 1   MANASGFLGSSVPALRRATQPQHSISSSRGSSSDFVFKRVFCCSAVQGSDRQSLG----D 60

Query: 61  SRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           SR PR+V+RGCKL+G GSA+PSLQISNDDLAK+VDTNDEWISVRTGIRNRRV+ G
Sbjct: 61  SRSPRLVSRGCKLIGSGSAIPSLQISNDDLAKIVDTNDEWISVRTGIRNRRVLTG 111

[Close]

BLAST of Lsi09G004030 vs. ExPASy Swiss-Prot
Match: Q07510 (3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 71/116 (61.21%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MANTSGFFATSVP-SLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEK-VSSGASPS 60
           MA + GFF+ SVP SL  +  P  G   SGF S  GISK +FCSS   +EK  ++G S S
Sbjct: 1   MATSYGFFSPSVPSSLNNKISPSLGINGSGFCSHLGISKRVFCSSIEASEKHAAAGVSSS 60

Query: 61  ESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           ESRV R+V RGCKLVGCGSAVP LQISNDDL+K V+T+DEWI+ RTGIR R V++G
Sbjct: 61  ESRVSRLVNRGCKLVGCGSAVPKLQISNDDLSKFVETSDEWIATRTGIRQRHVLSG 116

[Close]

BLAST of Lsi09G004030 vs. ExPASy Swiss-Prot
Match: P49243 (3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62640 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-28
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MANTSGFFA-TSVPSLRAR-NLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPS 60
           MAN SGFF   S+P+LR+R ++P+  S  SGF  S+  SK + CSS    +K +S +SPS
Sbjct: 1   MANASGFFTHPSIPNLRSRIHVPVRVS-GSGFCVSNRFSKRVLCSSVSSVDKDAS-SSPS 60

Query: 61  ESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           + + PR+V  GCKL+GCGSAVPSL ISNDDLAK+VDTNDEWI+ RTGIRNRRV++G
Sbjct: 61  QYQRPRLVPSGCKLIGCGSAVPSLLISNDDLAKIVDTNDEWIATRTGIRNRRVVSG 114

[Close]

BLAST of Lsi09G004030 vs. ExPASy Swiss-Prot
Match: Q92GC1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=fabH PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 70  CKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAGVCY 118
           CK++GCG  +PS  +SND+LAK VDTNDEWI  RTGI  R +     Y
Sbjct: 3   CKIIGCGGYLPSKIVSNDELAKFVDTNDEWIRTRTGITQRHIAGDTEY 50

[Close]

BLAST of Lsi09G004030 vs. ExPASy TrEMBL
Match: A0A5A7T9W0 (3-oxoacyl-(Acyl-carrier-protein) synthase 3 A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00190 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-52
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATSVPSLR RN PLGGSFRSGFRSSDGI KVIFCS+S+GAEKVSSGASPSES
Sbjct: 1   MANTSGFFATSVPSLRTRNFPLGGSFRSGFRSSDGIPKVIFCSTSIGAEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           RVPRI+TRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG
Sbjct: 61  RVPRILTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 114

[Close]

BLAST of Lsi09G004030 vs. ExPASy TrEMBL
Match: A0A1S3ATE0 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103482638 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-52
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATSVPSLR RN PLGGSFRSGFRSSDGI KVIFCS+S+GAEKVSSGASPSES
Sbjct: 1   MANTSGFFATSVPSLRTRNFPLGGSFRSGFRSSDGIPKVIFCSTSIGAEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           RVPRI+TRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG
Sbjct: 61  RVPRILTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 114

[Close]

BLAST of Lsi09G004030 vs. ExPASy TrEMBL
Match: A0A0A0KP71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G160250 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATSVPSLR RN PLG  FRSGFRSSD I KVIFCSSS+GAEKVSSGASPSES
Sbjct: 1   MANTSGFFATSVPSLRTRNFPLGACFRSGFRSSDRIPKVIFCSSSIGAEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           RVPRI+TRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG
Sbjct: 61  RVPRILTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 114

[Close]

BLAST of Lsi09G004030 vs. ExPASy TrEMBL
Match: A0A6J1HXJ0 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468941 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATS+PSLR RNLPL  SFRSGFRSSDGIS+VIFCSSS+G EKVSSGASPSES
Sbjct: 1   MANTSGFFATSIPSLRPRNLPLVPSFRSGFRSSDGISRVIFCSSSIGTEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           R+PR+VTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVI+G
Sbjct: 61  RLPRLVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVISG 114

[Close]

BLAST of Lsi09G004030 vs. ExPASy TrEMBL
Match: A0A6J1E3Y7 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430381 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.8e-50
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATS+PSLR RNLPL  SFRSGFRSSDGISKVIFCSSS+G EKVSSGASPSES
Sbjct: 1   MANTSGFFATSLPSLRPRNLPLVPSFRSGFRSSDGISKVIFCSSSIGTEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           R+PR+V+RGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVI+G
Sbjct: 61  RLPRLVSRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVISG 114

[Close]

BLAST of Lsi09G004030 vs. NCBI nr
Match: XP_038876119.1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Benincasa hispida])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATSVPSLR RNLPLGGSFRSGFRSSDGISK IFCSSSLGAEKVSSGASPSES
Sbjct: 1   MANTSGFFATSVPSLRTRNLPLGGSFRSGFRSSDGISKAIFCSSSLGAEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           RVPRIV RGCKLVGCGSAVPSL+ISNDDLAKLVDTNDEWISVRTGIRNRRVIAG
Sbjct: 61  RVPRIVNRGCKLVGCGSAVPSLKISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 114

[Close]

BLAST of Lsi09G004030 vs. NCBI nr
Match: XP_008437123.1 (PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis melo] >KAA0039688.1 3-oxoacyl-(acyl-carrier-protein) synthase 3 A [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.0e-52
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATSVPSLR RN PLGGSFRSGFRSSDGI KVIFCS+S+GAEKVSSGASPSES
Sbjct: 1   MANTSGFFATSVPSLRTRNFPLGGSFRSGFRSSDGIPKVIFCSTSIGAEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           RVPRI+TRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG
Sbjct: 61  RVPRILTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 114

[Close]

BLAST of Lsi09G004030 vs. NCBI nr
Match: XP_004147590.2 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis sativus] >KGN50222.1 hypothetical protein Csa_000503 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50
Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATSVPSLR RN PLG  FRSGFRSSD I KVIFCSSS+GAEKVSSGASPSES
Sbjct: 1   MANTSGFFATSVPSLRTRNFPLGACFRSGFRSSDRIPKVIFCSSSIGAEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           RVPRI+TRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG
Sbjct: 61  RVPRILTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 114

[Close]

BLAST of Lsi09G004030 vs. NCBI nr
Match: XP_022969872.1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 6.3e-50
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATS+PSLR RNLPL  SFRSGFRSSDGIS+VIFCSSS+G EKVSSGASPSES
Sbjct: 1   MANTSGFFATSIPSLRPRNLPLVPSFRSGFRSSDGISRVIFCSSSIGTEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           R+PR+VTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVI+G
Sbjct: 61  RLPRLVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVISG 114

[Close]

BLAST of Lsi09G004030 vs. NCBI nr
Match: XP_022922371.1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucurbita moschata] >KAG7016903.1 3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSES 60
           MANTSGFFATS+PSLR RNLPL  SFRSGFRSSDGISKVIFCSSS+G EKVSSGASPSES
Sbjct: 1   MANTSGFFATSLPSLRPRNLPLVPSFRSGFRSSDGISKVIFCSSSIGTEKVSSGASPSES 60

Query: 61  RVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           R+PR+V+RGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVI+G
Sbjct: 61  RLPRLVSRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVISG 114

[Close]

BLAST of Lsi09G004030 vs. TAIR 10
Match: AT1G62640.1 (3-ketoacyl-acyl carrier protein synthase III )

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-29
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MANTSGFFA-TSVPSLRAR-NLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPS 60
           MAN SGFF   S+P+LR+R ++P+  S  SGF  S+  SK + CSS    +K +S +SPS
Sbjct: 1   MANASGFFTHPSIPNLRSRIHVPVRVS-GSGFCVSNRFSKRVLCSSVSSVDKDAS-SSPS 60

Query: 61  ESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           + + PR+V  GCKL+GCGSAVPSL ISNDDLAK+VDTNDEWI+ RTGIRNRRV++G
Sbjct: 61  QYQRPRLVPSGCKLIGCGSAVPSLLISNDDLAKIVDTNDEWIATRTGIRNRRVVSG 114

[Close]

BLAST of Lsi09G004030 vs. TAIR 10
Match: AT1G62640.2 (3-ketoacyl-acyl carrier protein synthase III )

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-29
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MANTSGFFA-TSVPSLRAR-NLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPS 60
           MAN SGFF   S+P+LR+R ++P+  S  SGF  S+  SK + CSS    +K +S +SPS
Sbjct: 1   MANASGFFTHPSIPNLRSRIHVPVRVS-GSGFCVSNRFSKRVLCSSVSSVDKDAS-SSPS 60

Query: 61  ESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAG 115
           + + PR+V  GCKL+GCGSAVPSL ISNDDLAK+VDTNDEWI+ RTGIRNRRV++G
Sbjct: 61  QYQRPRLVPSGCKLIGCGSAVPSLLISNDDLAKIVDTNDEWIATRTGIRNRRVVSG 114

The following BLAST results are available for this feature:

BLAST of Lsi09G004030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49245	7.6e-30	62.07	3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic OS=Cuphea wrightii ...	[more]
P49244	3.8e-29	60.00	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii ...	[more]
Q07510	1.4e-28	61.21	3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Spinacia olerace...	[more]
P49243	5.4e-28	60.34	3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Arabidopsis thal...	[more]
Q92GC1	1.1e-09	56.25	3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Rickettsia conorii (strain ATCC V...	[more]

BLAST of Lsi09G004030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9W0	1.9e-52	94.74	3-oxoacyl-(Acyl-carrier-protein) synthase 3 A OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3ATE0	1.9e-52	94.74	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucumis melo OX=...	[more]
A0A0A0KP71	1.4e-50	92.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G160250 PE=3 SV=1	[more]
A0A6J1HXJ0	3.1e-50	91.23	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucurbita maxima...	[more]
A0A6J1E3Y7	6.8e-50	91.23	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucurbita moscha...	[more]

BLAST of Lsi09G004030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876119.1	1.4e-52	96.49	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Benincasa hispida]	[more]
XP_008437123.1	4.0e-52	94.74	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis...	[more]
XP_004147590.2	2.8e-50	92.98	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis sativus] >...	[more]
XP_022969872.1	6.3e-50	91.23	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucurbita maxima]	[more]
XP_022922371.1	1.4e-49	91.23	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucurbita moschata...	[more]

BLAST of Lsi09G004030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62640.1	3.9e-29	60.34	3-ketoacyl-acyl carrier protein synthase III	[more]
AT1G62640.2	3.9e-29	60.34	3-ketoacyl-acyl carrier protein synthase III	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016039	Thiolase-like	GENE3D	3.40.47.10		coord: 55..121 e-value: 2.1E-13 score: 51.7
IPR016039	Thiolase-like	SUPERFAMILY	53901	Thiolase-like	coord: 67..115
None	No IPR available	PANTHER	PTHR43091	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE	coord: 1..116
None	No IPR available	PANTHER	PTHR43091:SF5	3-OXOACYL-(ACYL CARRIER) SYNTHASE III	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G004030.1	Lsi09G004030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
molecular_function	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity
molecular_function	GO:0016746	acyltransferase activity