Lsi09G003770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G003770
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S13
Locationchr09: 3968928 .. 3971255 (+)
RNA-Seq ExpressionLsi09G003770
SyntenyLsi09G003770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCCCAATACTGGACCAGGAGCAAGATCCAGATTCCGTGTCACTATAAATTGCTGTGCCAAGCCGCGCTAGGGTTTTGGTTATTCGGCCGTCGCGGTAAAGCAACTCTCATCGGACTCGGGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGGTTTCTAATCTCCGCCGATTTGTTTCTCATTCACTTCGATTTCGTCTGTTGATTTCATTTGTTGAAATTCTTCCCAACCATTGACTCTATTTTCTCATTTTCAGTAAGGGTATCTCAGCCTCTGCATTGCCTTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACGGATGTAAGTATGCTACGGGAAGTTCTGAGCTTTGAGAATAACTTCCAGGATTTTGTTATTTCTTTTATAATAGTCATTTTTTCCCTATTGTAATTTGAACTTAGGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAGAAGTGTTACTGGAAACAAAATCTTGCGTATTCTTAAGGCCCATGGTATTCTTCTTTTCCCTGACGCCAAGCATTTCCATTTAAGTTGCTTAGGTGCATTTTTTCACTGTAGTTTGGCATGTACTATCTAGGATTGGCACCCGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCCGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCCCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAGTAAGTTTTCTTCATTCTCTGATAACTGACAGTCATATGCCATATTTGATATGATAATCTATTCAAACAATGTAGTTCATCGTTATGCTTTGTCTTTGGTGCTATCAAATCATTAATTTAGTTTCATATTTTAGTATAGCTACTTTCCTTCTTCCGAAGCTTGTGGTATTAAGCATGGTTTAGGTTGAGTTCTTTCTTATATAATATTACCTTTATGCATATGGATCAAGAATCATGTTGTCCTTTGACCAGATGAAATTTTATGTTAAAATATGCTATGGTGCATAATCCGTAATTCAAACCCAATAGTAACAAAGATATATAAGAGAAACACGGAAGATATATTTTGTTTGTGATCCAATGTCAACTAGTGTAGAATGGTTACATGTTATTACTGTTTGATAAAAAAAAATTGGGGCATCCCCTTGAAAATGGTGACATTTTGAGGTAAGTTATTAAGTGTTGATTTAACATATTGGGTTAGCGAAATATTATTCTCTCGGCTGTGTTATTGGATTGTGATGCATGTGTCCTAATTCTATTGAGTGCTAGTATCCTCTTGTGCATTTGGATTTAGTGCTTTAGTCTGTGGTGCTAATGTCGTAACCTGATTTGTAGGTTTAGAAATAGAATCCTTTTTCCCTGGACGATTTTGCGTAGTTAAACTAGCTTTACTATCAGTTTACAAAGATAGATACATTTCAGAATTGATTGGTTTTCCATTTAAATGTCAATATGGTATGTTTGTTTTTATTTTTCCTAATCTATTTTGGTATTTGAACTTTGCATAGAAATCTATTTTGGTCTTTGTTTGGGCTAAACTTTCTATAGAGATTTCCCTTTTAGAGTCCATAACTAGTGCTTGGATTCTTCACTTATACAAATTGTTGGATATAGTCTTATGAAACAATTGTGTAGATATACGGAACCTCATGATCGATATGATAAGCAGCTGCTTTATTAAGTTTCTTTTTCTCTGCAGCGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTGTGTTAGAGTGGTTGGTGGCTATATGATTCGATTTGTGATCGGCTTCAGCCATTGTGAAGTCAGGTGGATCAGTGAGAGTTGTGACTTGGTTTTTTATTTATGACATCAGTTTTGACTTCAGTTTTTATTTAGTATGGTATCTGTGACTTATTTGGCCAGATTTAAAAGCAAATTAGAAAAGATTGTGTTGCCTTGATGGCACATGTTTTCTTTTAATAGTATTACACTTGAAGCAAAAGTAATTTTCGTAAGATATGTACTACTGAGTTGTTAGTTCATATTGAAGAGAAGCCACCTACTCTAACGCTAGCTATTCTTCCTAAAAAATATTTGAACTTTTGTTTTTTTAGAGGGTGTTTTTATAGATTAATATAAAACCAGTGTTCTAAACGTTTTGCGTTTATAAAGAAAATTACGAATCATTTGATGGCTGCTGGCTAC

mRNA sequence

ATGAAAGCCCAATACTGGACCAGGAGCAAGATCCAGATTCCGTGTCACTATAAATTGCTGTGCCAAGCCGCGCTAGGGTTTTGGTTATTCGGCCGTCGCGGTAAAGCAACTCTCATCGGACTCGGGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGTAAGGGTATCTCAGCCTCTGCATTGCCTTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAGAAGTGTTACTGGAAACAAAATCTTGCGTATTCTTAAGGCCCATGGATTGGCACCCGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCCGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCCCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTGTGTTAGAGTGGTTGGTGGCTATATGATTCGATTTGTGATCGGCTTCAGCCATTGTGAAGTCAGGTGGATCAGTGAGAGTTGTGACTTGGTTTTTTATTTATGACATCAGTTTTGACTTCAGTTTTTATTTAGTATGGTATCTGTGACTTATTTGGCCAGATTTAAAAGCAAATTAGAAAAGATTGTGTTGCCTTGATGGCACATGTTTTCTTTTAATAGTATTACACTTGAAGCAAAAGTAATTTTCGTAAGATATGTACTACTGAGTTGTTAGTTCATATTGAAGAGAAGCCACCTACTCTAACGCTAGCTATTCTTCCTAAAAAATATTTGAACTTTTGTTTTTTTAGAGGGTGTTTTTATAGATTAATATAAAACCAGTGTTCTAAACGTTTTGCGTTTATAAAGAAAATTACGAATCATTTGATGGCTGCTGGCTAC

Coding sequence (CDS)

ATGAAAGCCCAATACTGGACCAGGAGCAAGATCCAGATTCCGTGTCACTATAAATTGCTGTGCCAAGCCGCGCTAGGGTTTTGGTTATTCGGCCGTCGCGGTAAAGCAACTCTCATCGGACTCGGGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGTAAGGGTATCTCAGCCTCTGCATTGCCTTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAGAAGTGTTACTGGAAACAAAATCTTGCGTATTCTTAAGGCCCATGGATTGGCACCCGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCCGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCCCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAA

Protein sequence

MKAQYWTRSKIQIPCHYKLLCQAALGFWLFGRRGKATLIGLGKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Homology
[Close]
BLAST of Lsi09G003770 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.3e-73
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-70
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.1e-70
Identity = 131/143 (91.61%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.4e-69
Identity = 130/143 (90.91%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.7e-64
Identity = 122/143 (85.31%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI  V+SVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YK+TKKLPP WKYESTTASTLVA
Sbjct: 129 YKRTKKLPPTWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy TrEMBL
Match: A0A0D2LZT7 (Ribosomal_S13_N domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G174200 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 7.2e-78
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0 

Query: 49  QPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDS 108
           QPWVVCT  GCKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDS
Sbjct: 18  QPWVVCTAEGCKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDS 77

Query: 109 HGIAQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 168
           HGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLIL
Sbjct: 78  HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 137

Query: 169 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 203
           VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 138 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 171

[Close]
BLAST of Lsi09G003770 vs. ExPASy TrEMBL
Match: A0A5A7TNG4 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003600 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 154/176 (87.50%), Postives = 158/176 (89.77%), Query Frame = 0 

Query: 24  ALGFWLFGRRGKATLIGL--GKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISS 83
           ALGFW+ GRR +ATLI L   KQG+ RQPWV        GISASALPYKRTPPSWLKISS
Sbjct: 6   ALGFWIAGRRSRATLIELRKRKQGQGRQPWV--------GISASALPYKRTPPSWLKISS 65

Query: 84  TDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNKILRILKAHGLAPEIPEDLYH 143
           TDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 66  TDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYH 125

Query: 144 LIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 198
           LIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Sbjct: 126 LIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA 173

[Close]
BLAST of Lsi09G003770 vs. ExPASy TrEMBL
Match: A0A0A0KMS8 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.1e-73
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy TrEMBL
Match: A0A1S3ATA6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.1e-73
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 7.0e-73
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. NCBI nr
Match: KJB09907.1 (hypothetical protein B456_001G174200, partial [Gossypium raimondii])

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-77
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0 

Query: 49  QPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDS 108
           QPWVVCT  GCKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDS
Sbjct: 18  QPWVVCTAEGCKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDS 77

Query: 109 HGIAQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 168
           HGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLIL
Sbjct: 78  HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 137

Query: 169 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 203
           VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 138 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 171

[Close]
BLAST of Lsi09G003770 vs. NCBI nr
Match: KAA0042849.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.5e-77
Identity = 154/176 (87.50%), Postives = 158/176 (89.77%), Query Frame = 0 

Query: 24  ALGFWLFGRRGKATLIGL--GKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISS 83
           ALGFW+ GRR +ATLI L   KQG+ RQPWV        GISASALPYKRTPPSWLKISS
Sbjct: 6   ALGFWIAGRRSRATLIELRKRKQGQGRQPWV--------GISASALPYKRTPPSWLKISS 65

Query: 84  TDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNKILRILKAHGLAPEIPEDLYH 143
           TDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGNKILRILKAHGLAPEIPEDLYH
Sbjct: 66  TDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYH 125

Query: 144 LIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 198
           LIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Sbjct: 126 LIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA 173

[Close]
BLAST of Lsi09G003770 vs. NCBI nr
Match: KAF7810164.1 (40S ribosomal protein S13 [Senna tora])

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-73
Identity = 145/164 (88.41%), Postives = 150/164 (91.46%), Query Frame = 0 

Query: 39  IGLGKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTP 98
           + +G  GK      +  +V  KGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTP
Sbjct: 127 VDVGSDGKILYEDFIARMVANKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTP 186

Query: 99  SQIGVILRDSHGIAQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK 158
           SQIGVILRDSHGIAQV+SVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK
Sbjct: 187 SQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK 246

Query: 159 DKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 203
           DKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 247 DKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 290

[Close]
BLAST of Lsi09G003770 vs. NCBI nr
Match: XP_004147576.1 (40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KGN50199.1 hypothetical protein Csa_000544 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 8.4e-73
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. NCBI nr
Match: XP_022922396.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6579439.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016913.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606139.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 264.6 bits (675), Expect = 6.4e-71
Identity = 131/143 (91.61%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Lsi09G003770 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-70
Identity = 130/143 (90.91%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 60  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 119
           KGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 120 NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 179
           +KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 180 YKKTKKLPPVWKYESTTASTLVA 203
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:
BLAST of Lsi09G003770 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623022.3e-7396.5040S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P462983.1e-7093.0140S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P592249.1e-7091.6140S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P592233.4e-6990.9140S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
Q69UI15.7e-6485.3140S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Lsi09G003770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0D2LZT77.2e-7895.45Ribosomal_S13_N domain-containing protein (Fragment) OS=Gossypium raimondii OX=2... [more]
A0A5A7TNG41.2e-7787.5040S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A0A0KMS84.1e-7399.30Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G15... [more]
A0A1S3ATA64.1e-7399.3040S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1[more]
A0A6J1HYG97.0e-7399.3040S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ... [more]
BLAST of Lsi09G003770 vs. NCBI nr
Match NameE-valueIdentityDescription
KJB09907.11.5e-7795.45hypothetical protein B456_001G174200, partial [Gossypium raimondii][more]
KAA0042849.12.5e-7787.5040S ribosomal protein S13 [Cucumis melo var. makuwa][more]
KAF7810164.11.3e-7388.4140S ribosomal protein S13 [Senna tora][more]
XP_004147576.18.4e-7399.3040S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribos... [more]
XP_022922396.11.4e-7299.3040S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosoma... [more]
BLAST of Lsi09G003770 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00100.16.4e-7191.61ribosomal protein S13A [more]
AT3G60770.12.4e-7090.91Ribosomal protein S13/S15 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 121..200
e-value: 2.9E-15
score: 66.7
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 125..196
e-value: 9.2E-15
score: 54.6
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 149..179
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 121..194
e-value: 6.52113E-28
score: 98.7294
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 57..111
e-value: 1.1E-27
score: 107.9
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 59..111
e-value: 6.5E-25
score: 87.0
NoneNo IPR availableGENE3D4.10.860.130coord: 86..133
e-value: 4.8E-29
score: 101.8
NoneNo IPR availableGENE3D1.10.287.10coord: 134..202
e-value: 1.7E-40
score: 139.2
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 59..202
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 59..202
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 43..200
score: 30.049356
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 117..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G003770.1Lsi09G003770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome