Lsi09G003570 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G003570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Mavicyanin-like
Location	chr09: 3703828 .. 3707069 (-)
RNA-Seq Expression	Lsi09G003570
Synteny	Lsi09G003570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGTAATTTTAAAATAGTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATATAAAGAGTGGAAAATTAATTCCTGATTTTAAAGTTAGTAATTTTGAACCATACTTAATTATTTTAGCTTAACATTTTATTAGTTTATATATCTATTAAATACAAATCTAATAATTGAGAGACACTCAACCGTTAATTTAGTAAGATAAAGCGTTGTTATACCTAAGCTTACTATATGTCATATTTAGTTTTTTTTTTTATTCAACACGTATTTTTTATGCTGAAAAAGTGGTTATTAATATTCTTTTGGGAAGAAATGAGGATTAGAAATAAGATTTTACATTCAAATTTCTTTTTAATTTATACATAGTATTGTGAGGTTTAGAGGGCAAATTATTAGAGGAAATATTTAAGAAACTTAAAGGGCTATTTTCAAATATAGGAGAATGAACTAAATTATTTATAAATATAGTAAAATTTTACTGTCTATCTCTAATAGACTACGATAGACTACTATCTGTGTCTATCTGTAGTCTATCGCGACACAAATAGTAGTCTATCATGGTCTATCACAAATAGATAATGAAATTTTGTTATATTTGTAAATATTTTTAACAATTTTGTCATTTAAAATAATTTCTCAAAACTTAACTTTTATATATATATATGGGGAATTTTTAAAAATATAAAAATAAGGGAAACTATTTACACAAAATAGCAAAATTTTTTAAATAGTTGTGATCTACGTTGATAGAAGTCTATCAGGGTCTATCTTCTATCAACGTCTATCAGTAATAGAAATTATAGAAATCTATCACGGATAGATATTGATAGAAGTCTATCAATGTCTATCAGTATTTTTTTTGCTATTTTCTGTAAATAATTTGACATTTCTATATGTGAAAATTTCCCTATATATAACACATACTAAACTCCACCTATCTTTTGAGATTTCTAGAGTCTATTCAATTGTCTAACCAAAGTTTATTCTATGACAATTTTTTTCTTTTTATTAAATAAAAAAAAAAAGAATCTTGGAGTTGAAGATGTGCCTCCAATGTTGAAGTATAAACTTGATGTTGGGTTAGAAGTATTTGAGTCTAGTCCAAAACTTGGAACGATAAAATTGGCCTCTTCGAGGACATCCGATAAAATTGGAATGATATAGAGAAGATCAACATGGTCCCTGCCACAAATCGAGAAATGGTCCAATTTTTTTTGTGTCTAGTACAAAACAAAAGCCCAATTTCTAGAAATATCAAGTAATAGAAAATTATAGAGATATTATTTGTAAGAAATGCTTAGAGTAGATTGAAGAATTATCTAGAATATATGAGGAAAAAAGTATACTTGTAAAGACTCTAGAGAGTCATCTGTAACCATTAGATCTTACAGTGTTGGTAAAATTCTAAGCATAGATTTGATAACACGAGTAGCTTCTTTCTCAATTTTCTCTTCCAAAGTTCCTCCAACCTCCAAAATTTCTTTCCAACATCCAAGTATTGGTGTTTATTAATGTTGTTTCACCCGACAGTATTCAACTACGAGCAAGGGACGCACGACGTACTCGTCGTTGACAGCATTGGCTTCGACCAGTGCGAACTATTTGCCAACGTTCCACCGCTGACGACTGGAAATGACCTAATCCAGTTGAAATCACCAGGGAAAAAATGGTATATCTGCACTGTTGGCATCCACTGTATTTTCGTACAGAGGCTCGCCATTACCGTGCTGGACCAGGGAGCCGATGTTCCTTCTCCCTCTCCAGCGCCTCTCCAGCGCCTCTTCCGACACCATCAGCCCCCCTTCCGACCAACTCAACTAATGCACCGCCGTCACCACCGTCGACTGCCACAAAAGCAACTGTTTCCGGCTTCGTGATGGCGTTTACTGTTCTGGCTGGGATATTATACATGATCAAGGCTTGA

mRNA sequence

ATGCAGAAGGCTCGCCATTACCGTGCTGGACCAGGGAGCCGATGTTCCTTCTCCCTCTCCAGCGCCTCTCCAGCGCCTCTTCCGACACCATCAGCCCCCCTTCCGACCAACTCAACTAATGCACCGCCGTCACCACCGTCGACTGCCACAAAAGCAACTGTTTCCGGCTTCGTGATGGCGTTTACTGTTCTGGCTGGGATATTATACATGATCAAGGCTTGA

Coding sequence (CDS)

ATGCAGAAGGCTCGCCATTACCGTGCTGGACCAGGGAGCCGATGTTCCTTCTCCCTCTCCAGCGCCTCTCCAGCGCCTCTTCCGACACCATCAGCCCCCCTTCCGACCAACTCAACTAATGCACCGCCGTCACCACCGTCGACTGCCACAAAAGCAACTGTTTCCGGCTTCGTGATGGCGTTTACTGTTCTGGCTGGGATATTATACATGATCAAGGCTTGA

Protein sequence

MQKARHYRAGPGSRCSFSLSSASPAPLPTPSAPLPTNSTNAPPSPPSTATKATVSGFVMAFTVLAGILYMIKA

Homology

[Close]

BLAST of Lsi09G003570 vs. ExPASy TrEMBL
Match: A0A5A7THL5 (Mavicyanin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003430 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 21  SASPAPLPTPSAPLPTNSTNAPPSPPSTATKATVSGFVMAFTVLAGIL 69
           S SP  LPTP A LPTNSTNAPP  PSTATKA VS F+M FT+LAG+L
Sbjct: 132 SPSPRHLPTPPASLPTNSTNAPPPAPSTATKAAVSVFLMVFTILAGML 179

[Close]

BLAST of Lsi09G003570 vs. NCBI nr
Match: XP_038874889.1 (LOW QUALITY PROTEIN: blue copper protein 1a-like [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 21  SASPAPLPTPSAPLPTNSTNAPPSPPSTATKATVSGFVMAFTVLAGILYMIKA 74
           S SP+PLPTP APLPTNSTNAPP  PS ATKA VSG VMAFTVLAGILYMIKA
Sbjct: 183 SPSPSPLPTPPAPLPTNSTNAPPPAPSAATKAAVSGIVMAFTVLAGILYMIKA 235

[Close]

BLAST of Lsi09G003570 vs. NCBI nr
Match: KAA0042834.1 (mavicyanin-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 21  SASPAPLPTPSAPLPTNSTNAPPSPPSTATKATVSGFVMAFTVLAGIL 69
           S SP  LPTP A LPTNSTNAPP  PSTATKA VS F+M FT+LAG+L
Sbjct: 132 SPSPRHLPTPPASLPTNSTNAPPPAPSTATKAAVSVFLMVFTILAGML 179

[Close]

BLAST of Lsi09G003570 vs. NCBI nr
Match: XP_004147604.3 (stellacyanin [Cucumis sativus] >KGN49700.2 hypothetical protein Csa_000594 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 36/49 (73.47%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 21  SASPAPLPTPSAPLPTNSTNAPPSPPSTATKATVSGFVMAFTV-LAGIL 69
           S SP  LPTP A LPTNSTNAPP  PSTATKA VS F+M FT+ LAGIL
Sbjct: 132 SPSPRLLPTPPASLPTNSTNAPPPAPSTATKAAVSVFLMVFTILLAGIL 180

The following BLAST results are available for this feature:

BLAST of Lsi09G003570 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G003570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THL5	1.0e-05	72.92	Mavicyanin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00343...	[more]

BLAST of Lsi09G003570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874889.1	1.5e-11	84.91	LOW QUALITY PROTEIN: blue copper protein 1a-like [Benincasa hispida]	[more]
KAA0042834.1	2.1e-05	72.92	mavicyanin-like [Cucumis melo var. makuwa]	[more]
XP_004147604.3	3.0e-04	73.47	stellacyanin [Cucumis sativus] >KGN49700.2 hypothetical protein Csa_000594 [Cucu...	[more]

BLAST of Lsi09G003570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G003570.1	Lsi09G003570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0009055	electron transfer activity