Lsi09G002510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G002510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 2619722 .. 2620343 (+)
RNA-Seq ExpressionLsi09G002510
SyntenyLsi09G002510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCATCTCCATATCCTCCTTTTGCTTGTTGTGGATTCAAGGTGACCCAGGTGACCCATTTGCCCCATTTCTCTGTTTTTTTGTTATTGCATTATTTGCTATTTAGTTTGCTCTGCCATTGTAGTAGTGCTTCACTTGTCACTAATTTTGATTGGAAAAAGTTTGTTCATCTTTCATTTTTGTAGTCCCATCAAACCCACTTTTCTTTTCTTTCCATAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGAGTGTAGTGTCATTTCGCCATTAAGATGGCCTACCCCTTTAGTTTTTCTGTGGGGAAATTACATGAAGCCTCTTGAGAAAGCTTCTTTTTTCGTTGCTTGGCCAATGGCCACCATTTGTTTTGGAATTGATGGAAAAAGTTTCACTCGTTGCTTAAAATATAGCTTGTTTGCTTTCTTTGCTTTCTTTTATTTGCAAAAATACGTTAAGTGGAAGGCAATATTTGAGTTTTGTAAGAAAGGGGAAGATATTAATACGTTTTGTTCACTTCTTCTTCCTTTCTTCTCGCTGCTACCGCTGTGTACTTGGAACTATTTCTCCGTATGTATAAGTTGA

mRNA sequence

ATGGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGAGTGTAGTGTCATTTCGCCATTAAGATGGCCTACCCCTTTAGTTTTTCTGTGGGGAAATTACATGAAGCCTCTTGAGAAAGCTTCTTTTTTCGTTGCTTGGCCAATGGCCACCATTTGTTTTGGAATTGATGGAAAAAGTTTCACTCGTTGCTTAAAATATAGCTTGTTTGCTTTCTTTGCTTTCTTTTATTTGCAAAAATACGTTAAGTGGAAGGCAATATTTGAGTTTTGTAAGAAAGGGGAAGATATTAATACGTTTTGTTCACTTCTTCTTCCTTTCTTCTCGCTGCTACCGCTGTGTACTTGGAACTATTTCTCCGTATGTATAAGTTGA

Coding sequence (CDS)

ATGGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGAGTGTAGTGTCATTTCGCCATTAAGATGGCCTACCCCTTTAGTTTTTCTGTGGGGAAATTACATGAAGCCTCTTGAGAAAGCTTCTTTTTTCGTTGCTTGGCCAATGGCCACCATTTGTTTTGGAATTGATGGAAAAAGTTTCACTCGTTGCTTAAAATATAGCTTGTTTGCTTTCTTTGCTTTCTTTTATTTGCAAAAATACGTTAAGTGGAAGGCAATATTTGAGTTTTGTAAGAAAGGGGAAGATATTAATACGTTTTGTTCACTTCTTCTTCCTTTCTTCTCGCTGCTACCGCTGTGTACTTGGAACTATTTCTCCGTATGTATAAGTTGA

Protein sequence

METVPCLILTYCSMETCVVECSVISPLRWPTPLVFLWGNYMKPLEKASFFVAWPMATICFGIDGKSFTRCLKYSLFAFFAFFYLQKYVKWKAIFEFCKKGEDINTFCSLLLPFFSLLPLCTWNYFSVCIS
Homology
[Close]
BLAST of Lsi09G002510 vs. ExPASy TrEMBL
Match: A0A0A0KQW2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G153060 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.7e-37
Identity = 81/95 (85.26%), Postives = 82/95 (86.32%), Query Frame = 0 

Query: 2   ETVPCLILTYCSMETCVVECSVISPLRWPTPLVFLWGNYMKPLEKASFFVAWPMATICFG 61
           ETVPCLILTYCSMETCVV+ SVISPLRWPT LVF W N MKPLEKAS  VAWPMATIC G
Sbjct: 22  ETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRNDMKPLEKASSLVAWPMATICLG 81

Query: 62  IDGKSFTRCLKYSLFAFFAFFYLQKYVKWKAIFEF 97
           IDGKSFT CLKYSLFAFF FFYL KYVK KAI EF
Sbjct: 82  IDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 116

[Close]
BLAST of Lsi09G002510 vs. NCBI nr
Match: KGN50091.1 (hypothetical protein Csa_000663 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 81/95 (85.26%), Postives = 82/95 (86.32%), Query Frame = 0 

Query: 2   ETVPCLILTYCSMETCVVECSVISPLRWPTPLVFLWGNYMKPLEKASFFVAWPMATICFG 61
           ETVPCLILTYCSMETCVV+ SVISPLRWPT LVF W N MKPLEKAS  VAWPMATIC G
Sbjct: 22  ETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRNDMKPLEKASSLVAWPMATICLG 81

Query: 62  IDGKSFTRCLKYSLFAFFAFFYLQKYVKWKAIFEF 97
           IDGKSFT CLKYSLFAFF FFYL KYVK KAI EF
Sbjct: 82  IDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 116

The following BLAST results are available for this feature:
BLAST of Lsi09G002510 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi09G002510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQW26.7e-3785.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G153060 PE=4 SV=1[more]
BLAST of Lsi09G002510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50091.11.4e-3685.26hypothetical protein Csa_000663 [Cucumis sativus][more]
BLAST of Lsi09G002510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G002510.1Lsi09G002510.1mRNA